Wall clock time and date at job start Mon Mar 30 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46693 * 269.99935 * 3 2 1 5 5 H 1.48495 * 109.47317 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00338 * 3 2 1 7 7 C 1.37867 * 120.00018 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85172 * 359.97438 * 7 2 1 9 9 C 1.53232 * 108.69741 * 231.22989 * 8 7 2 10 10 C 1.53005 * 109.37855 * 305.66359 * 9 8 7 11 11 H 1.09005 * 109.26030 * 303.19288 * 10 9 8 12 12 N 1.46503 * 109.39625 * 183.51420 * 10 9 8 13 13 C 1.39331 * 120.00452 * 84.44792 * 12 10 9 14 14 C 1.39057 * 119.87073 * 0.02562 * 13 12 10 15 15 C 1.39070 * 117.63214 * 179.97438 * 14 13 12 16 16 N 1.37144 * 134.63525 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.07644 * 359.96067 * 16 15 14 18 18 C 1.36934 * 109.83753 * 179.97438 * 16 15 14 19 19 C 1.34281 * 109.99347 * 359.97438 * 18 16 15 20 20 C 1.41266 * 117.99952 * 0.02562 * 15 14 13 21 21 N 1.32624 * 119.73534 * 359.97438 * 20 15 14 22 22 N 1.28531 * 121.70866 * 359.73282 * 21 20 15 23 23 C 1.52953 * 109.98742 * 63.31008 * 10 9 8 24 24 C 1.51271 * 120.84882 * 179.97438 * 7 2 1 25 25 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.62532 * 351.04191 * 8 7 2 27 27 H 1.09001 * 109.62715 * 111.41878 * 8 7 2 28 28 H 1.09003 * 109.48094 * 65.44635 * 9 8 7 29 29 H 1.08998 * 109.48540 * 185.48862 * 9 8 7 30 30 H 0.97000 * 119.99732 * 264.45271 * 12 10 9 31 31 H 1.07994 * 121.18732 * 359.95456 * 14 13 12 32 32 H 1.08001 * 125.00082 * 179.97438 * 18 16 15 33 33 H 1.07992 * 126.46983 * 179.97438 * 19 18 16 34 34 H 1.08997 * 109.48509 * 176.50033 * 23 10 9 35 35 H 1.09004 * 109.49182 * 56.46944 * 23 10 9 36 36 H 1.08996 * 109.62720 * 248.38384 * 24 7 2 37 37 H 1.08998 * 109.62860 * 8.76774 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0017 9 6 1.8227 -3.3861 1.1337 10 6 3.3406 -3.5064 0.9842 11 1 3.5739 -3.9122 -0.0003 12 7 3.8614 -4.4065 2.0161 13 6 3.8538 -5.7841 1.8074 14 6 3.3519 -6.3017 0.6184 15 6 3.3673 -7.6832 0.4590 16 7 2.9751 -8.5429 -0.5350 17 1 2.5787 -8.2755 -1.3790 18 6 3.2265 -9.8350 -0.1578 19 6 3.7786 -9.8569 1.0661 20 6 3.8896 -8.4666 1.5121 21 7 4.3452 -7.8752 2.6084 22 7 4.3309 -6.5970 2.7421 23 6 3.9915 -2.1304 1.1341 24 6 3.5170 -1.2164 0.0000 25 1 -0.4850 0.8400 0.0004 26 1 0.2037 -2.3408 0.1619 27 1 1.4164 -3.0181 -0.9538 28 1 1.5900 -2.9257 2.0940 29 1 1.3699 -4.3764 1.0859 30 1 4.2113 -4.0434 2.8447 31 1 2.9636 -5.6541 -0.1536 32 1 3.0124 -10.7080 -0.7566 33 1 4.0819 -10.7342 1.6178 34 1 5.0755 -2.2340 1.0883 35 1 3.7080 -1.6965 2.0931 36 1 3.8771 -1.6006 -0.9543 37 1 3.8982 -0.2072 0.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:22 Heat of formation + Delta-G solvation = 63.689871 kcal Electronic energy + Delta-G solvation = -20356.147784 eV Core-core repulsion = 17325.925612 eV Total energy + Delta-G solvation = -3030.222171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.71989 -40.15070 -38.98072 -36.17631 -33.95492 -32.63318 -31.88798 -31.45890 -30.30684 -28.28616 -25.71136 -24.27268 -23.49930 -22.84533 -21.72607 -21.24608 -19.86249 -18.20899 -18.04799 -17.39942 -16.73659 -16.43088 -16.37386 -16.06860 -15.10258 -14.85376 -14.72809 -14.40236 -14.18301 -14.05524 -14.01406 -13.80957 -13.33013 -12.96105 -12.79645 -12.57321 -12.13541 -12.05582 -11.91147 -11.72005 -11.30889 -10.90057 -10.67446 -10.59718 -10.51631 -10.27678 -9.61558 -8.47444 -8.16332 -6.11578 -0.24884 0.38739 1.40625 1.43734 1.51159 1.70695 1.88437 2.21443 2.41512 2.80638 3.11679 3.33501 3.54987 3.84441 3.95445 4.01214 4.19698 4.32351 4.37846 4.46299 4.70168 4.81250 4.84708 4.91875 4.97988 5.01973 5.05905 5.19489 5.24462 5.26707 5.51199 5.57154 5.62859 5.74517 5.76318 5.82851 6.14473 6.33246 6.55659 6.68796 6.95709 7.46996 7.94347 8.94290 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004159 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.816367 B = 6730.738244 C = 7133.196197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.021 3.979 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.498 4.498 8 C 0.011 3.989 9 C -0.108 4.108 10 C 0.178 3.822 11 H 0.075 0.925 12 N -0.707 5.707 13 C 0.343 3.657 14 C -0.219 4.219 15 C 0.131 3.869 16 N -0.584 5.584 17 H 0.437 0.563 18 C 0.099 3.901 19 C -0.201 4.201 20 C -0.033 4.033 21 N -0.195 5.195 22 N -0.340 5.340 23 C -0.107 4.107 24 C -0.020 4.020 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.006 0.994 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.407 0.593 31 H 0.150 0.850 32 H 0.236 0.764 33 H 0.176 0.824 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.029 0.971 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 -16.756 -3.246 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.517 4.517 8 C -0.027 4.027 9 C -0.147 4.147 10 C 0.073 3.927 11 H 0.093 0.907 12 N -0.338 5.338 13 C 0.106 3.894 14 C -0.258 4.258 15 C 0.011 3.989 16 N -0.192 5.192 17 H 0.278 0.722 18 C -0.028 4.028 19 C -0.227 4.227 20 C -0.180 4.180 21 N -0.041 5.041 22 N -0.196 5.196 23 C -0.145 4.145 24 C -0.058 4.058 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.244 0.756 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.193 0.807 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.450 -16.645 -2.016 18.347 hybrid contribution -0.923 1.751 -1.219 2.324 sum 6.527 -14.894 -3.234 16.580 Atomic orbital electron populations 1.69983 1.07835 1.27439 1.52118 1.25637 0.95305 1.01945 0.94864 0.85819 0.79462 0.79445 0.78643 1.20010 1.22418 1.16902 1.20647 0.91360 0.91629 1.48075 1.19293 0.96906 0.93561 0.92954 1.21905 0.95380 0.97710 0.99688 1.20803 0.92709 0.89165 0.90029 0.90658 1.44724 1.67155 1.00199 1.21752 1.19717 0.91684 0.87404 0.90592 1.20619 1.12141 0.92707 1.00333 1.18818 0.97036 0.91747 0.91319 1.41771 1.55177 1.05032 1.17202 0.72219 1.22857 0.97139 0.86907 0.95893 1.21817 1.10774 0.92560 0.97555 1.22242 1.05179 0.97852 0.92773 1.72523 1.10257 1.01919 1.19390 1.72921 1.22280 0.97734 1.26660 1.21708 0.98661 0.93781 1.00368 1.19792 0.94419 0.96557 0.94988 0.92919 0.95900 0.97551 0.94435 0.94229 0.75650 0.83231 0.74741 0.80696 0.91397 0.92747 0.95291 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.96 12.73 21.44 0.27 -53.69 16 2 C 0.02 1.09 5.46 84.65 0.46 1.56 16 3 Si 0.94 41.58 27.53 68.60 1.89 43.47 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.24 -9.98 6.11 99.48 0.61 -9.37 16 7 C -0.50 -24.86 5.52 -16.17 -0.09 -24.95 16 8 C 0.01 0.53 5.96 30.11 0.18 0.71 16 9 C -0.11 -4.38 5.44 30.67 0.17 -4.21 16 10 C 0.18 6.20 2.05 44.98 0.09 6.29 16 11 H 0.08 2.57 6.49 -2.38 -0.02 2.55 16 12 N -0.71 -23.14 5.26 -324.11 -1.70 -24.84 16 13 C 0.34 11.76 7.71 132.83 1.02 12.78 16 14 C -0.22 -6.69 8.88 22.67 0.20 -6.49 16 15 C 0.13 3.49 7.34 39.26 0.29 3.78 16 16 N -0.58 -9.39 6.05 -187.46 -1.13 -10.53 16 17 H 0.44 4.31 8.96 -92.71 -0.83 3.48 16 18 C 0.10 1.14 11.81 82.99 0.98 2.12 16 19 C -0.20 -3.78 11.08 23.50 0.26 -3.52 16 20 C -0.03 -0.98 7.63 41.90 0.32 -0.66 16 21 N -0.20 -6.94 11.57 -48.85 -0.57 -7.51 16 22 N -0.34 -12.54 11.52 -55.05 -0.63 -13.18 16 23 C -0.11 -3.81 5.41 30.64 0.17 -3.64 16 24 C -0.02 -0.81 5.59 30.09 0.17 -0.64 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.02 1.24 7.07 -2.39 -0.02 1.22 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.53 7.70 -2.39 -0.02 1.51 16 30 H 0.41 12.58 8.73 -92.71 -0.81 11.77 16 31 H 0.15 4.32 6.24 -2.91 -0.02 4.31 16 32 H 0.24 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.69 4.59 -2.39 -0.01 1.68 16 Total: -1.00 -68.39 299.76 1.73 -66.66 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.61 Total: 16.48 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.22 Total: -16.87 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -3.76 Total: -109.74 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.89 Total: 43.47 kcal Total: -68.39 1.73 -66.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.347 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds