Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35665 * 116.99888 * 2 1 4 4 C 1.38133 * 120.22213 * 359.72264 * 3 2 1 5 5 C 1.39058 * 119.98903 * 179.74862 * 4 3 2 6 6 N 1.39656 * 119.78081 * 180.23390 * 5 4 3 7 7 C 1.36637 * 125.67820 * 0.29605 * 6 5 4 8 8 C 1.34821 * 108.19903 * 180.02562 * 7 6 5 9 9 C 1.41007 * 107.47788 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.25746 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46939 * 90.02642 * 10 9 8 12 12 C 1.34819 * 107.47940 * 359.73320 * 9 8 7 13 13 C 1.39565 * 120.43660 * 0.50942 * 5 4 3 14 14 C 1.36273 * 120.44837 * 359.77059 * 13 5 4 15 15 C 1.40831 * 119.99946 * 359.97438 * 14 13 5 16 16 C 1.40988 * 120.21255 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99894 * 154.27584 * 16 15 14 18 18 C 1.39899 * 120.00287 * 334.26856 * 16 15 14 19 19 N 1.30905 * 119.99630 * 343.33691 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 163.33864 * 18 16 15 21 21 H 1.48505 * 109.47101 * 60.00151 * 20 18 16 22 22 H 1.48504 * 109.47303 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47130 * 300.00175 * 20 18 16 24 24 H 1.09002 * 109.47226 * 60.00355 * 1 2 3 25 25 H 1.08996 * 109.47574 * 299.99990 * 1 2 3 26 26 H 1.09004 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00369 * 359.97438 * 4 3 2 28 28 H 1.07999 * 125.90182 * 0.02562 * 7 6 5 29 29 H 1.07999 * 126.26179 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47027 * 210.01810 * 10 9 8 31 31 H 1.08997 * 109.47484 * 330.02439 * 10 9 8 32 32 H 1.00898 * 111.00257 * 56.04245 * 11 10 9 33 33 H 1.00901 * 110.99999 * 179.97438 * 11 10 9 34 34 H 1.07999 * 125.90430 * 180.25550 * 12 9 8 35 35 H 1.07997 * 119.77669 * 179.74800 * 13 5 4 36 36 H 1.08001 * 119.99781 * 179.97438 * 14 13 5 37 37 H 0.97000 * 119.99908 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2970 2.3702 -0.0058 5 6 1.9333 3.6066 -0.0005 6 7 1.1729 4.7780 -0.0014 7 6 -0.1920 4.8422 -0.0015 8 6 -0.5524 6.1413 -0.0031 9 6 0.6303 6.9090 -0.0046 10 6 0.7163 8.4135 -0.0072 11 7 0.7451 8.9047 1.3770 12 6 1.6701 6.0508 0.0021 13 6 3.3268 3.6847 0.0000 14 6 4.0820 2.5503 0.0000 15 6 3.4570 1.2883 0.0000 16 6 4.2339 0.1118 0.0005 17 1 3.8282 -0.8030 0.4065 18 6 5.5303 0.1294 -0.5250 19 7 5.9091 1.1143 -1.2998 20 14 6.7207 -1.2523 -0.1213 21 1 6.1594 -2.5433 -0.5942 22 1 8.0194 -0.9999 -0.7958 23 1 6.9299 -1.3120 1.3477 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2183 2.3179 -0.0107 28 1 -0.8656 3.9980 -0.0005 29 1 -1.5624 6.5240 -0.0032 30 1 1.6253 8.7246 -0.5220 31 1 -0.1518 8.8262 -0.5212 32 1 1.5040 8.4860 1.8936 33 1 0.8031 9.9117 1.4022 34 1 2.7154 6.3224 0.0068 35 1 3.8098 4.6506 0.0000 36 1 5.1598 2.6192 -0.0001 37 1 6.8081 1.1267 -1.6639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169725551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 33.172629 kcal Electronic energy + Delta-G solvation = -20078.024654 eV Core-core repulsion = 17014.186405 eV Total energy + Delta-G solvation = -3063.838249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91275 -38.74553 -36.37198 -34.82966 -33.78770 -31.41469 -29.50280 -28.89760 -28.17674 -26.66465 -25.29524 -23.87829 -21.71088 -20.85407 -19.60327 -18.68171 -17.95896 -17.36503 -15.82265 -15.47992 -15.16555 -14.84690 -14.73584 -14.50555 -14.16388 -13.85554 -13.56728 -13.24044 -13.00616 -12.56112 -12.42313 -11.91053 -11.60736 -11.44828 -11.36680 -11.20680 -11.19914 -10.93245 -10.70450 -10.24892 -10.03815 -9.88756 -9.40889 -8.64399 -8.48495 -7.65360 -7.49268 -7.10382 -6.88649 -4.39094 2.04726 2.73127 2.92161 2.98865 3.02401 3.31616 3.41805 3.72120 3.81533 4.31929 4.45248 4.95591 5.35349 5.36938 5.47813 5.61248 5.64384 5.69039 5.70799 5.78031 5.84296 5.95837 6.09520 6.14562 6.38059 6.61520 6.69414 6.86028 6.90533 7.05086 7.20335 7.24041 7.39929 7.49088 7.55988 7.59991 7.84313 8.00616 8.17289 8.28638 8.45740 8.60099 8.82439 9.98425 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.004659 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.542182 B = 6008.920146 C = 7020.195152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.029 3.971 4 C -0.177 4.177 5 C 0.001 3.999 6 N -0.348 5.348 7 C -0.026 4.026 8 C -0.190 4.190 9 C -0.183 4.183 10 C 0.142 3.858 11 N -0.848 5.848 12 C -0.011 4.011 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.097 3.903 16 C -0.431 4.431 17 H 0.087 0.913 18 C 0.071 3.929 19 N -0.787 5.787 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.262 1.262 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.340 0.660 33 H 0.333 0.667 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 5.542 1.563 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.222 6.222 3 C -0.016 4.016 4 C -0.197 4.197 5 C -0.090 4.090 6 N -0.013 5.013 7 C -0.157 4.157 8 C -0.215 4.215 9 C -0.190 4.190 10 C 0.011 3.989 11 N -0.377 5.377 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.154 4.154 15 C 0.094 3.906 16 C -0.459 4.459 17 H 0.105 0.895 18 C -0.148 4.148 19 N -0.412 5.412 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.186 1.186 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.017 4.784 1.455 7.083 hybrid contribution 1.148 -0.022 -0.243 1.174 sum -3.869 4.762 1.211 6.254 Atomic orbital electron populations 1.22785 0.81379 1.02121 1.00069 1.85992 1.18513 1.27567 1.90110 1.18889 0.92104 0.82369 1.08203 1.20211 0.97814 0.91050 1.10641 1.17022 0.90221 0.83177 1.18613 1.41324 1.05375 1.04600 1.50039 1.21644 0.83536 0.98232 1.12298 1.20542 0.97653 0.91871 1.11416 1.19111 0.92909 0.93768 1.13173 1.19923 0.99415 0.90736 0.88803 1.58763 1.53842 1.10625 1.14476 1.21478 0.98519 0.82765 1.11620 1.20093 0.90673 0.98381 1.04749 1.20697 0.99770 0.89945 1.04947 1.17137 0.87322 0.94196 0.91927 1.19496 0.96885 0.96899 1.32618 0.89488 1.25994 0.98877 0.97274 0.92638 1.69820 1.19724 1.30416 1.21190 0.86234 0.78675 0.81149 0.80024 1.18759 1.20191 1.18612 0.94007 0.94054 0.89662 0.87608 0.83109 0.85409 0.95787 0.91082 0.84738 0.85569 0.83069 0.88401 0.84996 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.83 9.79 -18.70 -0.18 -7.01 16 3 C 0.03 0.70 6.72 -38.40 -0.26 0.45 16 4 C -0.18 -3.91 8.42 -39.32 -0.33 -4.24 16 5 C 0.00 0.03 6.63 -83.49 -0.55 -0.52 16 6 N -0.35 -7.00 2.96 -60.79 -0.18 -7.18 16 7 C -0.03 -0.48 10.72 -16.62 -0.18 -0.66 16 8 C -0.19 -3.25 10.81 -39.74 -0.43 -3.68 16 9 C -0.18 -3.05 5.65 -104.79 -0.59 -3.64 16 10 C 0.14 1.89 7.28 -4.98 -0.04 1.86 16 11 N -0.85 -10.33 9.61 -11.41 -0.11 -10.44 16 12 C -0.01 -0.20 10.64 -16.62 -0.18 -0.38 16 13 C -0.12 -2.70 9.37 -39.79 -0.37 -3.07 16 14 C -0.13 -3.28 8.62 -39.31 -0.34 -3.62 16 15 C 0.10 2.50 5.58 -106.66 -0.59 1.90 16 16 C -0.43 -11.00 8.70 -37.92 -0.33 -11.33 16 17 H 0.09 2.19 7.66 -52.48 -0.40 1.79 16 18 C 0.07 1.69 5.15 -17.33 -0.09 1.60 16 19 N -0.79 -19.20 10.96 55.55 0.61 -18.59 16 20 Si 0.92 17.84 29.59 -169.99 -5.03 12.81 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 25 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.11 2.07 4.90 -52.49 -0.26 1.81 16 28 H 0.15 2.46 6.98 -52.49 -0.37 2.09 16 29 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.34 4.09 8.99 -39.29 -0.35 3.74 16 33 H 0.33 3.14 9.08 -39.29 -0.36 2.78 16 34 H 0.15 2.51 6.97 -52.49 -0.37 2.14 16 35 H 0.10 1.99 6.65 -52.49 -0.35 1.64 16 36 H 0.13 3.28 6.19 -52.49 -0.32 2.95 16 37 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -27.88 311.84 -7.88 -35.76 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.40 Total: 13.76 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.29 Total: -23.81 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.32 Total: -36.21 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.18 Total: -7.01 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.88 -7.88 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169725551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.937 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds