Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35665 * 116.99888 * 2 1 4 4 C 1.38133 * 120.22213 * 359.72264 * 3 2 1 5 5 C 1.39058 * 119.98903 * 179.74862 * 4 3 2 6 6 N 1.39656 * 119.78081 * 180.23390 * 5 4 3 7 7 C 1.36637 * 125.67820 * 0.29605 * 6 5 4 8 8 C 1.34821 * 108.19903 * 180.02562 * 7 6 5 9 9 C 1.41007 * 107.47788 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.25746 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46939 * 90.02642 * 10 9 8 12 12 C 1.34819 * 107.47940 * 359.73320 * 9 8 7 13 13 C 1.39565 * 120.43660 * 0.50942 * 5 4 3 14 14 C 1.36273 * 120.44837 * 359.77059 * 13 5 4 15 15 C 1.40831 * 119.99946 * 359.97438 * 14 13 5 16 16 C 1.40988 * 120.21255 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99894 * 154.27584 * 16 15 14 18 18 C 1.39899 * 120.00287 * 334.26856 * 16 15 14 19 19 N 1.30905 * 119.99630 * 343.33691 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 163.33864 * 18 16 15 21 21 H 1.48505 * 109.47101 * 60.00151 * 20 18 16 22 22 H 1.48504 * 109.47303 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47130 * 300.00175 * 20 18 16 24 24 H 1.09002 * 109.47226 * 60.00355 * 1 2 3 25 25 H 1.08996 * 109.47574 * 299.99990 * 1 2 3 26 26 H 1.09004 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00369 * 359.97438 * 4 3 2 28 28 H 1.07999 * 125.90182 * 0.02562 * 7 6 5 29 29 H 1.07999 * 126.26179 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47027 * 210.01810 * 10 9 8 31 31 H 1.08997 * 109.47484 * 330.02439 * 10 9 8 32 32 H 1.00898 * 111.00257 * 56.04245 * 11 10 9 33 33 H 1.00901 * 110.99999 * 179.97438 * 11 10 9 34 34 H 1.07999 * 125.90430 * 180.25550 * 12 9 8 35 35 H 1.07997 * 119.77669 * 179.74800 * 13 5 4 36 36 H 1.08001 * 119.99781 * 179.97438 * 14 13 5 37 37 H 0.97000 * 119.99908 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2970 2.3702 -0.0058 5 6 1.9333 3.6066 -0.0005 6 7 1.1729 4.7780 -0.0014 7 6 -0.1920 4.8422 -0.0015 8 6 -0.5524 6.1413 -0.0031 9 6 0.6303 6.9090 -0.0046 10 6 0.7163 8.4135 -0.0072 11 7 0.7451 8.9047 1.3770 12 6 1.6701 6.0508 0.0021 13 6 3.3268 3.6847 0.0000 14 6 4.0820 2.5503 0.0000 15 6 3.4570 1.2883 0.0000 16 6 4.2339 0.1118 0.0005 17 1 3.8282 -0.8030 0.4065 18 6 5.5303 0.1294 -0.5250 19 7 5.9091 1.1143 -1.2998 20 14 6.7207 -1.2523 -0.1213 21 1 6.1594 -2.5433 -0.5942 22 1 8.0194 -0.9999 -0.7958 23 1 6.9299 -1.3120 1.3477 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2183 2.3179 -0.0107 28 1 -0.8656 3.9980 -0.0005 29 1 -1.5624 6.5240 -0.0032 30 1 1.6253 8.7246 -0.5220 31 1 -0.1518 8.8262 -0.5212 32 1 1.5040 8.4860 1.8936 33 1 0.8031 9.9117 1.4022 34 1 2.7154 6.3224 0.0068 35 1 3.8098 4.6506 0.0000 36 1 5.1598 2.6192 -0.0001 37 1 6.8081 1.1267 -1.6639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169725551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = 17.004859 kcal Electronic energy + Delta-G solvation = -20078.725742 eV Core-core repulsion = 17014.186405 eV Total energy + Delta-G solvation = -3064.539336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.37026 -40.41616 -38.03501 -36.21358 -35.27414 -32.97121 -31.16938 -30.50511 -29.59139 -28.12660 -26.84676 -25.24576 -23.36338 -22.48236 -21.10462 -20.07207 -19.61924 -19.02932 -17.19905 -17.19035 -16.48158 -16.36333 -16.34001 -15.85977 -15.67330 -15.16173 -14.94597 -14.73001 -14.45083 -14.21412 -13.83185 -13.49017 -13.24464 -12.92508 -12.77563 -12.67196 -12.62441 -12.39578 -12.20049 -11.81033 -11.78263 -11.59886 -11.13434 -10.17970 -9.53113 -9.23112 -9.01807 -8.82717 -8.61545 -6.24165 0.39323 0.91575 1.37192 1.40793 1.50939 1.79325 2.05268 2.19261 2.22512 2.68485 2.79680 3.54477 3.99048 4.02359 4.13020 4.22755 4.28152 4.36183 4.40229 4.43005 4.49471 4.66134 4.70603 4.81014 4.93458 4.97660 5.16062 5.20062 5.28190 5.40406 5.55062 5.68669 5.80201 6.05153 6.14046 6.30765 6.32113 6.53022 6.65827 6.70743 6.72651 6.80652 7.08657 8.26392 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.004659 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.542182 B = 6008.920146 C = 7020.195152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.022 3.978 4 C -0.183 4.183 5 C 0.014 3.986 6 N -0.369 5.369 7 C -0.041 4.041 8 C -0.190 4.190 9 C -0.175 4.175 10 C 0.143 3.857 11 N -0.853 5.853 12 C -0.032 4.032 13 C -0.130 4.130 14 C -0.146 4.146 15 C 0.061 3.939 16 C -0.469 4.469 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.259 1.259 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.341 0.659 33 H 0.350 0.650 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 6.640 1.745 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.246 6.246 3 C -0.023 4.023 4 C -0.203 4.203 5 C -0.078 4.078 6 N -0.036 5.036 7 C -0.170 4.170 8 C -0.214 4.214 9 C -0.182 4.182 10 C 0.013 3.987 11 N -0.384 5.384 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.166 4.166 15 C 0.058 3.942 16 C -0.498 4.498 17 H 0.095 0.905 18 C -0.180 4.180 19 N -0.445 5.445 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.189 1.189 23 H -0.184 1.184 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.134 0.866 27 H 0.149 0.851 28 H 0.184 0.816 29 H 0.169 0.831 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.317 5.927 1.639 8.816 hybrid contribution 1.288 -0.162 -0.292 1.330 sum -5.029 5.766 1.347 7.768 Atomic orbital electron populations 1.23138 0.78391 1.04608 1.00966 1.85947 1.21657 1.27057 1.89987 1.19038 0.92016 0.83569 1.07698 1.20439 0.99062 0.90453 1.10368 1.17191 0.90369 0.84328 1.15945 1.41389 1.05954 1.04296 1.51985 1.22104 0.83057 0.99572 1.12252 1.20930 0.98886 0.91470 1.10142 1.19565 0.92232 0.95469 1.10888 1.19951 1.00565 0.88482 0.89736 1.58699 1.54004 1.12064 1.13677 1.21873 0.99639 0.82493 1.12227 1.20256 0.91227 0.98588 1.04934 1.20650 0.99456 0.90536 1.05951 1.17500 0.88710 0.94729 0.93293 1.19599 0.98532 0.96742 1.34917 0.90529 1.26751 0.99780 0.99666 0.91841 1.69855 1.20457 1.32149 1.22020 0.85215 0.76678 0.77907 0.79758 1.18617 1.18884 1.18364 0.93172 0.92854 0.86556 0.85100 0.81589 0.83108 0.94663 0.89952 0.84687 0.83630 0.82221 0.86634 0.86189 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.86 16 2 O -0.33 -14.86 9.79 -89.82 -0.88 -15.74 16 3 C 0.02 1.08 6.72 23.03 0.15 1.24 16 4 C -0.18 -8.03 8.42 22.44 0.19 -7.84 16 5 C 0.01 0.62 6.63 38.41 0.25 0.87 16 6 N -0.37 -14.34 2.96 -346.24 -1.03 -15.37 16 7 C -0.04 -1.40 10.72 83.16 0.89 -0.51 16 8 C -0.19 -5.93 10.81 22.16 0.24 -5.69 16 9 C -0.17 -5.38 5.65 -19.97 -0.11 -5.49 16 10 C 0.14 3.38 7.28 85.55 0.62 4.00 16 11 N -0.85 -18.30 9.61 -190.00 -1.83 -20.13 16 12 C -0.03 -1.11 10.64 83.16 0.88 -0.22 16 13 C -0.13 -6.00 9.37 22.13 0.21 -5.79 16 14 C -0.15 -7.44 8.62 22.45 0.19 -7.25 16 15 C 0.06 3.24 5.58 -21.18 -0.12 3.12 16 16 C -0.47 -25.06 8.70 23.35 0.20 -24.86 16 17 H 0.08 4.07 7.66 -2.91 -0.02 4.05 16 18 C 0.04 1.72 5.15 85.23 0.44 2.16 16 19 N -0.82 -41.33 10.96 21.82 0.24 -41.09 16 20 Si 0.98 37.31 29.59 68.60 2.03 39.34 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 24 H 0.05 1.47 7.65 -2.39 -0.02 1.45 16 25 H 0.05 1.53 7.68 -2.39 -0.02 1.51 16 26 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 27 H 0.13 4.91 4.90 -2.91 -0.01 4.90 16 28 H 0.17 5.00 6.98 -2.91 -0.02 4.98 16 29 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.34 7.37 8.99 -89.70 -0.81 6.56 16 33 H 0.35 5.53 9.08 -89.69 -0.81 4.72 16 34 H 0.16 5.11 6.97 -2.91 -0.02 5.09 16 35 H 0.12 4.74 6.65 -2.91 -0.02 4.72 16 36 H 0.12 6.29 6.19 -2.91 -0.02 6.27 16 37 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 Total: -1.00 -61.23 311.84 3.20 -58.03 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.50 Total: 39.36 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 5.16 Total: -44.41 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.61 Total: -76.59 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.88 Total: -15.74 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -61.23 3.20 -58.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169725551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.034 kcal (2) G-P(sol) polarization free energy of solvation -61.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds