Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 119.99908 * 2 1 4 4 H 1.08004 * 119.99763 * 204.19624 * 3 2 1 5 5 C 1.38953 * 120.00426 * 24.19959 * 3 2 1 6 6 N 1.31414 * 119.99481 * 12.79048 * 5 3 2 7 7 Si 1.86798 * 120.00378 * 192.79154 * 5 3 2 8 8 H 1.48499 * 109.47091 * 59.99607 * 7 5 3 9 9 H 1.48495 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46811 * 299.99869 * 7 5 3 11 11 C 1.34773 * 119.99890 * 179.72448 * 2 1 3 12 12 O 1.21290 * 120.00403 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00014 * 0.02562 * 11 2 1 14 14 C 1.50701 * 109.47434 * 179.97438 * 13 11 2 15 15 C 1.34237 * 125.02953 * 84.69477 * 14 13 11 16 16 C 1.46498 * 106.99185 * 179.86337 * 15 14 13 17 17 C 1.39626 * 134.02995 * 180.11441 * 16 15 14 18 18 C 1.36622 * 119.76474 * 180.35625 * 17 16 15 19 19 C 1.38835 * 120.52823 * 359.95587 * 18 17 16 20 20 C 1.37748 * 120.66277 * 0.02562 * 19 18 17 21 21 C 1.39129 * 119.78218 * 359.97438 * 20 19 18 22 22 N 1.36832 * 125.03644 * 265.00589 * 14 13 11 23 23 C 1.46498 * 125.06054 * 359.97438 * 22 14 13 24 24 H 1.09001 * 109.47297 * 266.13743 * 1 2 3 25 25 H 1.09006 * 109.46952 * 26.13691 * 1 2 3 26 26 H 1.08997 * 109.46899 * 146.13317 * 1 2 3 27 27 H 0.97001 * 119.99913 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46866 * 300.00211 * 13 11 2 29 29 H 1.09000 * 109.47260 * 60.00022 * 13 11 2 30 30 H 1.08001 * 126.50814 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.11738 * 0.32929 * 17 16 15 32 32 H 1.08001 * 119.73495 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.66880 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.10491 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47275 * 90.00489 * 23 22 14 36 36 H 1.09004 * 109.46771 * 210.00499 * 23 22 14 37 37 H 1.09005 * 109.47208 * 330.00208 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1594 1.2283 -0.3834 5 6 1.5474 2.3378 0.4933 6 7 0.4327 2.2509 1.1838 7 14 2.3210 4.0080 0.1748 8 1 2.4023 4.2448 -1.2889 9 1 1.4898 5.0663 0.8027 10 1 3.6863 4.0404 0.7581 11 6 2.1389 -1.1672 0.0056 12 8 3.3518 -1.1673 0.0061 13 6 1.3853 -2.4723 0.0113 14 6 2.3646 -3.6178 0.0163 15 6 2.9425 -4.1326 1.1131 16 6 3.8132 -5.2229 0.6664 17 6 4.6581 -6.1207 1.3219 18 6 5.3607 -7.0424 0.5986 19 6 5.2409 -7.0943 -0.7836 20 6 4.4129 -6.2184 -1.4504 21 6 3.6879 -5.2715 -0.7338 22 7 2.8009 -4.2831 -1.0969 23 6 2.3853 -3.9883 -2.4704 24 1 -0.3634 -0.0692 1.0253 25 1 -0.3633 0.9226 -0.4527 26 1 -0.3633 -0.8533 -0.5727 27 1 0.0118 3.0540 1.5285 28 1 0.7583 -2.5259 0.9013 29 1 0.7590 -2.5341 -0.8786 30 1 2.7925 -3.8064 2.1316 31 1 4.7561 -6.0864 2.3969 32 1 6.0144 -7.7363 1.1060 33 1 5.8025 -7.8288 -1.3417 34 1 4.3261 -6.2670 -2.5257 35 1 3.0601 -3.2501 -2.9037 36 1 2.4170 -4.9022 -3.0637 37 1 1.3693 -3.5933 -2.4658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182264826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = 36.358327 kcal Electronic energy + Delta-G solvation = -20343.024846 eV Core-core repulsion = 17279.324739 eV Total energy + Delta-G solvation = -3063.700107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10249 -38.44316 -36.84912 -34.67778 -32.69610 -31.82354 -30.80659 -29.99323 -27.28077 -26.19888 -25.76047 -24.23161 -21.79516 -21.29448 -19.93097 -18.58770 -16.90104 -16.74476 -16.29605 -15.95318 -15.06875 -14.88406 -14.55619 -14.31664 -13.96971 -13.81325 -13.55545 -12.83454 -12.70915 -12.44078 -12.36139 -12.15457 -11.84697 -11.58460 -11.42118 -11.25936 -11.10280 -10.90304 -10.86417 -10.60837 -10.41895 -10.26459 -9.35550 -9.02637 -8.46914 -7.78927 -7.68792 -7.28180 -6.34662 -3.91032 1.37935 1.87785 2.96872 3.14132 3.17609 3.23236 3.27644 3.85312 4.12870 4.17525 4.80029 4.88205 4.91973 5.06444 5.08552 5.19269 5.25347 5.32181 5.54611 5.63677 5.68055 5.72959 5.81651 5.89136 5.96444 6.11298 6.28546 6.33047 6.34637 6.67532 6.79170 6.81903 7.07041 7.14416 7.19231 7.52561 7.54566 7.60857 8.11423 8.46292 9.16644 9.38672 9.95318 10.70264 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.004135 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.376036 B = 6769.513995 C = 6889.168681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.032 3.968 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.449 3.551 12 O -0.576 6.576 13 C -0.077 4.077 14 C 0.126 3.874 15 C -0.197 4.197 16 C -0.101 4.101 17 C -0.072 4.072 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.129 4.129 21 C 0.097 3.903 22 N -0.479 5.479 23 C 0.079 3.921 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.268 0.732 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -14.052 -4.336 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.166 5.166 3 C -0.435 4.435 4 H 0.114 0.886 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.236 3.764 12 O -0.459 6.459 13 C -0.118 4.118 14 C 0.019 3.981 15 C -0.221 4.221 16 C -0.106 4.106 17 C -0.090 4.090 18 C -0.175 4.175 19 C -0.129 4.129 20 C -0.150 4.150 21 C -0.009 4.009 22 N -0.162 5.162 23 C -0.063 4.063 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.161 0.839 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.325 -13.775 -4.570 14.517 hybrid contribution 0.101 1.034 -0.133 1.047 sum 0.426 -12.741 -4.704 13.589 Atomic orbital electron populations 1.21500 0.81276 0.99830 1.00725 1.43559 1.05397 1.04602 1.63078 1.19580 1.00501 0.84029 1.39347 0.88574 1.25333 0.96627 1.00101 0.95103 1.69978 1.19175 1.29733 1.33300 0.86002 0.79115 0.80943 0.78678 1.19951 1.20910 1.19759 1.19802 0.88090 0.84297 0.84258 1.90571 1.13701 1.86808 1.54839 1.20354 0.96225 0.90985 1.04213 1.19758 0.98663 0.94379 0.85336 1.21332 1.02906 0.99861 0.98024 1.19199 1.00635 0.98566 0.92170 1.20238 0.95326 0.94150 0.99331 1.20514 1.02238 1.00665 0.94049 1.20667 0.98956 0.98881 0.94441 1.19936 0.99684 0.96702 0.98643 1.18196 0.95475 0.93081 0.94147 1.43651 1.37795 1.28549 1.06218 1.21881 1.01540 1.02059 0.80833 0.92838 0.90651 0.95754 0.92175 0.87676 0.89694 0.83877 0.86359 0.86552 0.86327 0.86848 0.91161 0.90505 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.44 59.85 0.51 2.87 16 2 N -0.45 -11.25 3.01 -122.19 -0.37 -11.62 16 3 C -0.31 -8.51 9.24 -14.93 -0.14 -8.65 16 4 H 0.10 2.81 7.45 -52.48 -0.39 2.42 16 5 C 0.03 0.83 5.04 -17.47 -0.09 0.74 16 6 N -0.88 -23.28 10.83 55.50 0.60 -22.68 16 7 Si 0.93 20.69 29.57 -169.99 -5.03 15.66 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 C 0.45 10.79 7.62 -10.99 -0.08 10.71 16 12 O -0.58 -16.19 15.75 5.55 0.09 -16.11 16 13 C -0.08 -1.39 4.52 -29.03 -0.13 -1.52 16 14 C 0.13 2.33 5.32 -81.77 -0.44 1.89 16 15 C -0.20 -3.66 10.95 -37.67 -0.41 -4.08 16 16 C -0.10 -1.77 6.37 -105.14 -0.67 -2.44 16 17 C -0.07 -1.07 10.05 -39.65 -0.40 -1.47 16 18 C -0.16 -2.02 9.97 -39.94 -0.40 -2.42 16 19 C -0.11 -1.40 10.01 -39.54 -0.40 -1.79 16 20 C -0.13 -1.82 9.97 -39.43 -0.39 -2.21 16 21 C 0.10 1.65 6.81 -83.99 -0.57 1.08 16 22 N -0.48 -8.11 3.18 -117.19 -0.37 -8.48 16 23 C 0.08 1.02 10.80 59.85 0.65 1.67 16 24 H 0.05 1.17 7.82 -51.93 -0.41 0.77 16 25 H 0.07 1.71 6.81 -51.93 -0.35 1.36 16 26 H 0.02 0.41 6.61 -51.93 -0.34 0.07 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.11 1.72 8.11 -51.93 -0.42 1.30 16 29 H 0.08 1.30 6.04 -51.93 -0.31 0.99 16 30 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.93 6.81 -51.93 -0.35 0.58 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -32.99 313.26 -8.00 -40.98 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.67 Total: 3.15 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.96 Total: -5.63 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.14 Total: -42.78 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.99 -8.00 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182264826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.341 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds