Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 119.99908 * 2 1 4 4 H 1.08004 * 119.99763 * 204.19624 * 3 2 1 5 5 C 1.38953 * 120.00426 * 24.19959 * 3 2 1 6 6 N 1.31414 * 119.99481 * 12.79048 * 5 3 2 7 7 Si 1.86798 * 120.00378 * 192.79154 * 5 3 2 8 8 H 1.48499 * 109.47091 * 59.99607 * 7 5 3 9 9 H 1.48495 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46811 * 299.99869 * 7 5 3 11 11 C 1.34773 * 119.99890 * 179.72448 * 2 1 3 12 12 O 1.21290 * 120.00403 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00014 * 0.02562 * 11 2 1 14 14 C 1.50701 * 109.47434 * 179.97438 * 13 11 2 15 15 C 1.34237 * 125.02953 * 84.69477 * 14 13 11 16 16 C 1.46498 * 106.99185 * 179.86337 * 15 14 13 17 17 C 1.39626 * 134.02995 * 180.11441 * 16 15 14 18 18 C 1.36622 * 119.76474 * 180.35625 * 17 16 15 19 19 C 1.38835 * 120.52823 * 359.95587 * 18 17 16 20 20 C 1.37748 * 120.66277 * 0.02562 * 19 18 17 21 21 C 1.39129 * 119.78218 * 359.97438 * 20 19 18 22 22 N 1.36832 * 125.03644 * 265.00589 * 14 13 11 23 23 C 1.46498 * 125.06054 * 359.97438 * 22 14 13 24 24 H 1.09001 * 109.47297 * 266.13743 * 1 2 3 25 25 H 1.09006 * 109.46952 * 26.13691 * 1 2 3 26 26 H 1.08997 * 109.46899 * 146.13317 * 1 2 3 27 27 H 0.97001 * 119.99913 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46866 * 300.00211 * 13 11 2 29 29 H 1.09000 * 109.47260 * 60.00022 * 13 11 2 30 30 H 1.08001 * 126.50814 * 359.97438 * 15 14 13 31 31 H 1.08000 * 120.11738 * 0.32929 * 17 16 15 32 32 H 1.08001 * 119.73495 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.66880 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.10491 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47275 * 90.00489 * 23 22 14 36 36 H 1.09004 * 109.46771 * 210.00499 * 23 22 14 37 37 H 1.09005 * 109.47208 * 330.00208 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1594 1.2283 -0.3834 5 6 1.5474 2.3378 0.4933 6 7 0.4327 2.2509 1.1838 7 14 2.3210 4.0080 0.1748 8 1 2.4023 4.2448 -1.2889 9 1 1.4898 5.0663 0.8027 10 1 3.6863 4.0404 0.7581 11 6 2.1389 -1.1672 0.0056 12 8 3.3518 -1.1673 0.0061 13 6 1.3853 -2.4723 0.0113 14 6 2.3646 -3.6178 0.0163 15 6 2.9425 -4.1326 1.1131 16 6 3.8132 -5.2229 0.6664 17 6 4.6581 -6.1207 1.3219 18 6 5.3607 -7.0424 0.5986 19 6 5.2409 -7.0943 -0.7836 20 6 4.4129 -6.2184 -1.4504 21 6 3.6879 -5.2715 -0.7338 22 7 2.8009 -4.2831 -1.0969 23 6 2.3853 -3.9883 -2.4704 24 1 -0.3634 -0.0692 1.0253 25 1 -0.3633 0.9226 -0.4527 26 1 -0.3633 -0.8533 -0.5727 27 1 0.0118 3.0540 1.5285 28 1 0.7583 -2.5259 0.9013 29 1 0.7590 -2.5341 -0.8786 30 1 2.7925 -3.8064 2.1316 31 1 4.7561 -6.0864 2.3969 32 1 6.0144 -7.7363 1.1060 33 1 5.8025 -7.8288 -1.3417 34 1 4.3261 -6.2670 -2.5257 35 1 3.0601 -3.2501 -2.9037 36 1 2.4170 -4.9022 -3.0637 37 1 1.3693 -3.5933 -2.4658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182264826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = 17.263650 kcal Electronic energy + Delta-G solvation = -20343.852854 eV Core-core repulsion = 17279.324739 eV Total energy + Delta-G solvation = -3064.528114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31446 -40.27043 -38.00741 -36.63763 -33.94685 -33.70284 -32.25082 -31.08946 -28.72832 -27.84680 -26.98902 -26.06837 -23.01991 -22.44857 -21.39699 -20.12424 -18.89037 -17.99885 -17.86177 -17.26277 -16.68383 -16.27006 -16.01757 -15.95047 -15.60797 -15.00321 -14.72243 -14.26745 -14.03516 -13.83256 -13.77351 -13.51384 -13.33644 -13.14539 -13.03723 -12.89214 -12.64803 -12.44919 -12.22055 -12.13828 -12.04218 -11.68864 -11.00909 -10.55078 -10.39031 -9.67441 -8.98627 -8.49914 -8.34606 -6.00238 0.23528 0.76754 1.37690 1.39726 1.49693 1.67839 1.95108 2.02698 2.28675 3.03944 3.07226 3.14013 3.61771 3.79396 3.94016 4.11478 4.17929 4.19835 4.30745 4.38076 4.51791 4.58506 4.61897 4.67204 4.67635 4.78212 5.00727 5.03542 5.11379 5.22132 5.38318 5.43454 5.60107 5.74062 5.90789 5.98291 6.08531 6.32026 6.44613 6.49753 7.16286 7.45159 8.02355 8.67474 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.004135 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.376036 B = 6769.513995 C = 6889.168681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.462 5.462 3 C -0.345 4.345 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.894 5.894 7 Si 0.986 3.014 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.442 3.558 12 O -0.626 6.626 13 C -0.061 4.061 14 C 0.105 3.895 15 C -0.223 4.223 16 C -0.136 4.136 17 C -0.090 4.090 18 C -0.151 4.151 19 C -0.103 4.103 20 C -0.137 4.137 21 C 0.076 3.924 22 N -0.484 5.484 23 C 0.071 3.929 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.274 0.726 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -15.527 -5.431 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.181 5.181 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.201 4.201 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.191 1.191 9 H -0.193 1.193 10 H -0.206 1.206 11 C 0.231 3.769 12 O -0.513 6.513 13 C -0.101 4.101 14 C -0.003 4.003 15 C -0.248 4.248 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.170 4.170 19 C -0.122 4.122 20 C -0.158 4.158 21 C -0.031 4.031 22 N -0.168 5.168 23 C -0.069 4.069 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.075 -15.260 -5.676 16.282 hybrid contribution 0.244 1.388 0.233 1.429 sum 0.319 -13.872 -5.443 14.905 Atomic orbital electron populations 1.21499 0.79107 1.01053 1.00858 1.43822 1.06834 1.04359 1.63061 1.19515 1.00229 0.86141 1.41441 0.91532 1.26035 0.97026 1.02770 0.94295 1.70044 1.19557 1.30832 1.32846 0.85111 0.77934 0.77068 0.78915 1.19104 1.19271 1.20581 1.20742 0.87860 0.85843 0.82438 1.90528 1.16229 1.87849 1.56731 1.20222 0.95932 0.87360 1.06585 1.19797 0.99445 0.94832 0.86201 1.21553 1.03933 1.01044 0.98226 1.19513 1.01869 0.99404 0.93233 1.20540 0.95535 0.94463 1.00308 1.20959 1.01446 1.00038 0.94534 1.21188 0.97878 0.98561 0.94584 1.20342 0.99314 0.96116 1.00016 1.18650 0.96124 0.93927 0.94358 1.43856 1.37666 1.28297 1.06936 1.22132 1.01917 1.03434 0.79430 0.93675 0.92331 0.91005 0.91627 0.85880 0.86385 0.84355 0.85290 0.83338 0.82584 0.84371 0.92515 0.87379 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.96 8.44 127.77 1.08 6.04 16 2 N -0.46 -23.63 3.01 -658.88 -1.98 -25.62 16 3 C -0.35 -19.76 9.24 84.04 0.78 -18.98 16 4 H 0.07 4.11 7.45 -2.91 -0.02 4.09 16 5 C 0.00 0.04 5.04 84.93 0.43 0.47 16 6 N -0.89 -47.13 10.83 21.66 0.23 -46.89 16 7 Si 0.99 42.62 29.57 68.60 2.03 44.65 16 8 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 9 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 C 0.44 21.72 7.62 87.66 0.67 22.38 16 12 O -0.63 -36.80 15.75 -3.06 -0.05 -36.85 16 13 C -0.06 -2.16 4.52 29.10 0.13 -2.03 16 14 C 0.11 3.93 5.32 40.87 0.22 4.15 16 15 C -0.22 -8.60 10.95 23.51 0.26 -8.34 16 16 C -0.14 -4.82 6.37 -20.20 -0.13 -4.95 16 17 C -0.09 -2.63 10.05 22.23 0.22 -2.40 16 18 C -0.15 -3.52 9.97 22.03 0.22 -3.30 16 19 C -0.10 -2.27 10.01 22.30 0.22 -2.04 16 20 C -0.14 -3.56 9.97 22.37 0.22 -3.33 16 21 C 0.08 2.51 6.81 39.03 0.27 2.78 16 22 N -0.48 -16.18 3.18 -524.69 -1.67 -17.85 16 23 C 0.07 1.75 10.80 127.77 1.38 3.13 16 24 H 0.04 1.96 7.82 -2.39 -0.02 1.94 16 25 H 0.06 2.64 6.81 -2.38 -0.02 2.63 16 26 H 0.07 2.30 6.61 -2.39 -0.02 2.28 16 27 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.12 3.91 8.11 -2.39 -0.02 3.90 16 29 H 0.12 3.35 6.04 -2.39 -0.01 3.34 16 30 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 31 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 37 H 0.10 2.01 6.81 -2.38 -0.02 1.99 16 Total: -1.00 -74.71 313.26 5.60 -69.12 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.07 Total: 19.88 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.96 Total: -6.43 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.42 Total: -90.36 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.05 Total: -36.85 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.71 5.60 -69.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182264826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.379 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds