Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99870 * 2 1 4 4 C 1.33114 * 120.00285 * 179.97438 * 2 1 3 5 5 F 1.35095 * 120.00066 * 172.86460 * 4 2 1 6 6 C 1.47296 * 119.99659 * 352.86906 * 4 2 1 7 7 O 1.21608 * 120.00481 * 353.94272 * 6 4 2 8 8 N 1.34786 * 119.99742 * 173.94343 * 6 4 2 9 9 C 1.46501 * 119.99571 * 179.97438 * 8 6 4 10 10 H 1.08997 * 110.88851 * 37.43355 * 9 8 6 11 11 C 1.54906 * 111.00445 * 273.54709 * 9 8 6 12 12 N 1.47431 * 104.83206 * 204.88092 * 11 9 8 13 13 C 1.36930 * 125.64946 * 204.08944 * 12 11 9 14 14 H 1.07999 * 120.00566 * 0.02562 * 13 12 11 15 15 C 1.38818 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99625 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00286 * 179.72918 * 15 13 12 18 18 H 1.48504 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47191 * 119.99886 * 17 15 13 20 20 H 1.48505 * 109.46922 * 240.00340 * 17 15 13 21 21 C 1.47025 * 108.69868 * 24.35770 * 12 11 9 22 22 C 1.54334 * 107.26748 * 358.58480 * 21 12 11 23 23 H 1.09001 * 110.66552 * 96.52530 * 22 21 12 24 24 O 1.42901 * 110.84630 * 219.67126 * 22 21 12 25 25 H 1.08997 * 109.47292 * 264.38430 * 1 2 3 26 26 H 1.08999 * 109.47035 * 24.38937 * 1 2 3 27 27 H 1.09004 * 109.46943 * 144.38469 * 1 2 3 28 28 H 1.08997 * 109.46896 * 239.99821 * 3 2 1 29 29 H 1.08998 * 109.47130 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47494 * 119.99562 * 3 2 1 31 31 H 0.96992 * 120.00140 * 0.02562 * 8 6 4 32 32 H 1.08997 * 110.37036 * 86.04793 * 11 9 8 33 33 H 1.09004 * 110.37177 * 323.71954 * 11 9 8 34 34 H 0.97003 * 119.99604 * 179.97438 * 16 15 13 35 35 H 1.09007 * 109.87882 * 118.13365 * 21 12 11 36 36 H 1.09000 * 109.88160 * 239.28873 * 21 12 11 37 37 H 0.96697 * 114.00274 * 293.69228 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1528 0.0005 5 9 3.5158 -1.1573 -0.1448 6 6 1.4447 -2.4234 0.1594 7 8 0.2527 -2.4153 0.4001 8 7 2.0998 -3.5951 0.0382 9 6 1.3759 -4.8588 0.1968 10 1 0.3766 -4.7909 -0.2332 11 6 1.3120 -5.2789 1.6864 12 7 1.1465 -6.7436 1.6587 13 6 0.5925 -7.5031 2.6543 14 1 0.2314 -7.0313 3.5562 15 6 0.4939 -8.8796 2.5040 16 7 0.9335 -9.4547 1.4047 17 14 -0.2549 -9.9166 3.8653 18 1 -0.6632 -9.0370 4.9900 19 1 -1.4446 -10.6353 3.3427 20 1 0.7473 -10.9017 4.3454 21 6 1.6806 -7.2544 0.3877 22 6 2.1701 -6.0374 -0.4255 23 1 3.2424 -5.8925 -0.2932 24 8 1.8492 -6.1885 -1.8098 25 1 -0.3634 -0.1006 1.0227 26 1 -0.3633 0.9360 -0.4244 27 1 -0.3633 -0.8355 -0.5985 28 1 2.8872 1.3628 -0.8900 29 1 1.5522 2.1336 -0.0005 30 1 2.8871 1.3630 0.8900 31 1 3.0506 -3.6015 -0.1534 32 1 0.4588 -4.8100 2.1766 33 1 2.2376 -5.0113 2.1962 34 1 0.8649 -10.4166 1.2998 35 1 2.5120 -7.9324 0.5809 36 1 0.8959 -7.7740 -0.1621 37 1 2.3194 -6.9122 -2.2459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192178415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -87.026999 kcal Electronic energy + Delta-G solvation = -21344.924073 eV Core-core repulsion = 17845.104352 eV Total energy + Delta-G solvation = -3499.819721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.93436 -39.83807 -38.02724 -35.50289 -35.02617 -33.99248 -31.74662 -28.91216 -28.09344 -27.55502 -26.66921 -24.44713 -21.91875 -20.59178 -20.20760 -19.13964 -18.01351 -17.05530 -16.73272 -16.10225 -15.96836 -15.47205 -14.85718 -14.47946 -14.26467 -14.02004 -13.71977 -13.36444 -13.22605 -12.76601 -12.65799 -12.62022 -12.51646 -12.30441 -12.08090 -11.78895 -11.46087 -11.27488 -10.90003 -10.83654 -10.14529 -9.93152 -9.86070 -9.72739 -9.33877 -9.09173 -8.76956 -8.63168 -6.92809 -5.77438 -3.11990 1.05400 3.08933 3.11033 3.38555 3.44353 3.46809 4.20779 4.42805 4.55226 4.60010 4.69437 5.05511 5.14464 5.24595 5.42477 5.52072 5.56014 5.59840 5.64022 5.70644 5.79200 5.86261 6.03270 6.07014 6.14206 6.37348 6.49084 6.59851 6.84669 7.30764 7.45195 7.58868 7.72616 8.09480 8.14885 8.21552 9.13940 9.73926 10.36850 11.34455 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.004275 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.386731 B = 6548.059899 C = 7030.865240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.023 4.023 5 F -0.140 7.140 6 C 0.545 3.455 7 O -0.517 6.517 8 N -0.706 5.706 9 C 0.139 3.861 10 H 0.105 0.895 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.228 4.228 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.154 3.846 22 C 0.069 3.931 23 H 0.058 0.942 24 O -0.563 6.563 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 16.844 -5.371 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.179 4.179 4 C -0.046 4.046 5 F -0.119 7.119 6 C 0.331 3.669 7 O -0.395 6.395 8 N -0.355 5.355 9 C 0.034 3.966 10 H 0.123 0.877 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.356 4.356 14 H 0.100 0.900 15 C -0.204 4.204 16 N -0.571 5.571 17 Si 0.746 3.254 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.028 3.972 22 C 0.009 3.991 23 H 0.076 0.924 24 O -0.368 6.368 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.665 17.092 -5.031 18.191 hybrid contribution 0.918 -1.156 0.462 1.547 sum 4.583 15.936 -4.570 17.200 Atomic orbital electron populations 1.21053 0.88808 1.02960 1.04130 1.22703 0.98096 0.93516 0.93664 1.20901 1.00234 0.93643 1.03107 1.19489 0.77322 0.94702 1.13050 1.91448 1.29676 1.97161 1.93568 1.18174 0.87157 0.83382 0.78171 1.90824 1.13837 1.86598 1.48242 1.45848 1.12880 1.05583 1.71229 1.22306 0.96731 0.80161 0.97404 0.87719 1.21850 0.99062 0.86574 0.92232 1.44256 1.71310 0.99805 1.17410 1.19146 1.32395 0.88584 0.95517 0.90046 1.24821 1.01202 0.96507 0.97843 1.69935 1.51747 1.09545 1.25912 0.85985 0.78417 0.80206 0.80809 1.20403 1.21644 1.21703 1.21830 0.98656 0.90612 0.86082 1.23451 0.96774 0.97033 0.81890 0.92416 1.86458 1.71158 1.56615 1.22591 0.89792 0.92042 0.88898 0.90535 0.90694 0.90412 0.76447 0.92938 0.95843 0.93692 0.93269 0.91957 0.77573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.44 36.01 0.30 -0.93 16 2 C -0.08 -0.85 6.11 -101.13 -0.62 -1.47 16 3 C -0.12 -0.97 9.63 36.01 0.35 -0.62 16 4 C -0.02 -0.31 7.35 -37.68 -0.28 -0.58 16 5 F -0.14 -1.74 16.21 2.25 0.04 -1.71 16 6 C 0.54 8.66 7.62 -12.57 -0.10 8.57 16 7 O -0.52 -9.43 13.04 5.27 0.07 -9.36 16 8 N -0.71 -11.15 5.23 -52.84 -0.28 -11.43 16 9 C 0.14 2.65 3.04 -65.78 -0.20 2.45 16 10 H 0.10 2.24 7.73 -51.93 -0.40 1.84 16 11 C 0.13 2.82 6.93 -2.53 -0.02 2.80 16 12 N -0.60 -15.44 3.39 -170.06 -0.58 -16.02 16 13 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 14 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 17 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.15 3.66 5.16 -3.06 -0.02 3.64 16 22 C 0.07 1.28 3.95 -24.89 -0.10 1.18 16 23 H 0.06 0.95 7.99 -51.93 -0.42 0.54 16 24 O -0.56 -9.76 13.39 -35.23 -0.47 -10.23 16 25 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 26 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 27 H 0.09 1.22 6.15 -51.93 -0.32 0.90 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 5.43 8.08 -40.82 -0.33 5.10 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 36 H 0.06 1.66 7.28 -51.93 -0.38 1.29 16 37 H 0.38 4.94 9.12 45.56 0.42 5.36 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -31.93 312.85 -6.17 -38.10 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.29 Total: 6.90 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.92 Total: 8.16 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.28 Total: -53.64 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.40 Total: -19.60 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.93 -6.17 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192178415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.926 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds