Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99870 * 2 1 4 4 C 1.33114 * 120.00285 * 179.97438 * 2 1 3 5 5 F 1.35095 * 120.00066 * 172.86460 * 4 2 1 6 6 C 1.47296 * 119.99659 * 352.86906 * 4 2 1 7 7 O 1.21608 * 120.00481 * 353.94272 * 6 4 2 8 8 N 1.34786 * 119.99742 * 173.94343 * 6 4 2 9 9 C 1.46501 * 119.99571 * 179.97438 * 8 6 4 10 10 H 1.08997 * 110.88851 * 37.43355 * 9 8 6 11 11 C 1.54906 * 111.00445 * 273.54709 * 9 8 6 12 12 N 1.47431 * 104.83206 * 204.88092 * 11 9 8 13 13 C 1.36930 * 125.64946 * 204.08944 * 12 11 9 14 14 H 1.07999 * 120.00566 * 0.02562 * 13 12 11 15 15 C 1.38818 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99625 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00286 * 179.72918 * 15 13 12 18 18 H 1.48504 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47191 * 119.99886 * 17 15 13 20 20 H 1.48505 * 109.46922 * 240.00340 * 17 15 13 21 21 C 1.47025 * 108.69868 * 24.35770 * 12 11 9 22 22 C 1.54334 * 107.26748 * 358.58480 * 21 12 11 23 23 H 1.09001 * 110.66552 * 96.52530 * 22 21 12 24 24 O 1.42901 * 110.84630 * 219.67126 * 22 21 12 25 25 H 1.08997 * 109.47292 * 264.38430 * 1 2 3 26 26 H 1.08999 * 109.47035 * 24.38937 * 1 2 3 27 27 H 1.09004 * 109.46943 * 144.38469 * 1 2 3 28 28 H 1.08997 * 109.46896 * 239.99821 * 3 2 1 29 29 H 1.08998 * 109.47130 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47494 * 119.99562 * 3 2 1 31 31 H 0.96992 * 120.00140 * 0.02562 * 8 6 4 32 32 H 1.08997 * 110.37036 * 86.04793 * 11 9 8 33 33 H 1.09004 * 110.37177 * 323.71954 * 11 9 8 34 34 H 0.97003 * 119.99604 * 179.97438 * 16 15 13 35 35 H 1.09007 * 109.87882 * 118.13365 * 21 12 11 36 36 H 1.09000 * 109.88160 * 239.28873 * 21 12 11 37 37 H 0.96697 * 114.00274 * 293.69228 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1528 0.0005 5 9 3.5158 -1.1573 -0.1448 6 6 1.4447 -2.4234 0.1594 7 8 0.2527 -2.4153 0.4001 8 7 2.0998 -3.5951 0.0382 9 6 1.3759 -4.8588 0.1968 10 1 0.3766 -4.7909 -0.2332 11 6 1.3120 -5.2789 1.6864 12 7 1.1465 -6.7436 1.6587 13 6 0.5925 -7.5031 2.6543 14 1 0.2314 -7.0313 3.5562 15 6 0.4939 -8.8796 2.5040 16 7 0.9335 -9.4547 1.4047 17 14 -0.2549 -9.9166 3.8653 18 1 -0.6632 -9.0370 4.9900 19 1 -1.4446 -10.6353 3.3427 20 1 0.7473 -10.9017 4.3454 21 6 1.6806 -7.2544 0.3877 22 6 2.1701 -6.0374 -0.4255 23 1 3.2424 -5.8925 -0.2932 24 8 1.8492 -6.1885 -1.8098 25 1 -0.3634 -0.1006 1.0227 26 1 -0.3633 0.9360 -0.4244 27 1 -0.3633 -0.8355 -0.5985 28 1 2.8872 1.3628 -0.8900 29 1 1.5522 2.1336 -0.0005 30 1 2.8871 1.3630 0.8900 31 1 3.0506 -3.6015 -0.1534 32 1 0.4588 -4.8100 2.1766 33 1 2.2376 -5.0113 2.1962 34 1 0.8649 -10.4166 1.2998 35 1 2.5120 -7.9324 0.5809 36 1 0.8959 -7.7740 -0.1621 37 1 2.3194 -6.9122 -2.2459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192178415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -111.578058 kcal Electronic energy + Delta-G solvation = -21345.988687 eV Core-core repulsion = 17845.104352 eV Total energy + Delta-G solvation = -3500.884335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87090 -41.17892 -39.58517 -36.73522 -36.45630 -35.42196 -33.67034 -30.52544 -29.34250 -28.66825 -28.06420 -26.31480 -23.24184 -22.31909 -21.79372 -20.26739 -19.23123 -18.88974 -18.24023 -17.41877 -17.11341 -16.75997 -16.34721 -16.05170 -15.75613 -15.45978 -14.99694 -14.53639 -14.50079 -14.26067 -14.01934 -13.83406 -13.61288 -13.41134 -13.30475 -13.18651 -13.05638 -12.78259 -12.75370 -12.50211 -12.06843 -11.90721 -11.58265 -11.09552 -10.82285 -10.77180 -10.33853 -9.80879 -8.99759 -7.90582 -5.28182 0.06436 1.45574 1.46869 1.57280 1.84855 1.91133 2.46139 3.07429 3.13000 3.30992 3.49019 3.62904 3.83734 3.89378 4.00262 4.12789 4.25112 4.39172 4.51051 4.64256 4.75784 4.78784 4.83888 4.91505 4.95813 5.06324 5.21658 5.34609 5.38880 5.42418 5.53086 5.63939 6.11071 6.37021 6.83107 6.97731 7.03073 7.66614 8.29168 9.19453 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.004275 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.386731 B = 6548.059899 C = 7030.865240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.123 4.123 4 C -0.049 4.049 5 F -0.136 7.136 6 C 0.541 3.459 7 O -0.548 6.548 8 N -0.699 5.699 9 C 0.155 3.845 10 H 0.078 0.922 11 C 0.132 3.868 12 N -0.622 5.622 13 C -0.249 4.249 14 H 0.082 0.918 15 C -0.060 4.060 16 N -0.948 5.948 17 Si 0.982 3.018 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.287 1.287 21 C 0.162 3.838 22 C 0.091 3.909 23 H 0.091 0.909 24 O -0.568 6.568 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.250 0.750 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 18.937 -5.424 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.179 4.179 4 C -0.071 4.071 5 F -0.115 7.115 6 C 0.329 3.671 7 O -0.428 6.428 8 N -0.349 5.349 9 C 0.049 3.951 10 H 0.096 0.904 11 C 0.005 3.995 12 N -0.350 5.350 13 C -0.378 4.378 14 H 0.100 0.900 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.810 3.190 18 H -0.192 1.192 19 H -0.218 1.218 20 H -0.214 1.214 21 C 0.036 3.964 22 C 0.030 3.970 23 H 0.109 0.891 24 O -0.375 6.375 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.564 19.217 -5.103 20.400 hybrid contribution 0.603 -1.713 0.452 1.872 sum 5.168 17.504 -4.651 18.834 Atomic orbital electron populations 1.21069 0.88919 1.03679 1.03528 1.23133 0.98227 0.94352 0.89566 1.21044 1.00735 0.92201 1.03920 1.19114 0.77637 0.93692 1.16628 1.91454 1.29080 1.97045 1.93935 1.18671 0.87008 0.84177 0.77208 1.90817 1.15253 1.87153 1.49578 1.45646 1.13376 1.04466 1.71455 1.21787 0.96106 0.81921 0.95322 0.90384 1.21914 0.98894 0.84484 0.94208 1.44524 1.71324 1.01515 1.17594 1.19493 1.32628 0.89367 0.96299 0.90027 1.25661 1.01918 0.97590 1.00184 1.70135 1.52598 1.09426 1.27479 0.84964 0.77295 0.78399 0.78366 1.19200 1.21793 1.21401 1.21626 0.96519 0.92421 0.85813 1.23131 0.98079 0.94001 0.81755 0.89100 1.86424 1.71938 1.57639 1.21548 0.90334 0.88760 0.91356 0.89390 0.88357 0.89564 0.74855 0.94342 0.94453 0.94094 0.95537 0.95744 0.75253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.44 71.24 0.60 -1.73 16 2 C -0.05 -0.98 6.11 -17.60 -0.11 -1.09 16 3 C -0.12 -1.48 9.63 71.24 0.69 -0.79 16 4 C -0.05 -1.19 7.35 23.50 0.17 -1.02 16 5 F -0.14 -3.11 16.21 44.97 0.73 -2.38 16 6 C 0.54 16.93 7.62 86.62 0.66 17.59 16 7 O -0.55 -20.25 13.04 -4.06 -0.05 -20.30 16 8 N -0.70 -21.47 5.23 -439.35 -2.30 -23.76 16 9 C 0.15 5.92 3.04 46.38 0.14 6.06 16 10 H 0.08 3.43 7.73 -2.39 -0.02 3.41 16 11 C 0.13 5.77 6.93 86.85 0.60 6.37 16 12 N -0.62 -32.77 3.39 -691.94 -2.35 -35.12 16 13 C -0.25 -14.28 10.28 84.04 0.86 -13.42 16 14 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 15 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 16 N -0.95 -56.33 10.31 21.65 0.22 -56.11 16 17 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 C 0.16 7.90 5.16 86.73 0.45 8.34 16 22 C 0.09 3.32 3.95 31.79 0.13 3.44 16 23 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 24 O -0.57 -19.09 13.39 -148.98 -2.00 -21.08 16 25 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 26 H 0.09 1.26 7.94 -2.39 -0.02 1.24 16 27 H 0.07 1.77 6.15 -2.39 -0.01 1.75 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.76 7.87 -2.39 -0.02 0.74 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.41 10.47 8.08 -92.71 -0.75 9.72 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.03 1.39 7.52 -2.38 -0.02 1.37 16 36 H 0.02 1.36 7.28 -2.39 -0.02 1.34 16 37 H 0.40 9.84 9.12 -74.06 -0.68 9.17 16 Total: -1.00 -70.77 312.85 0.62 -70.15 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.32 Total: 19.82 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 4.66 Total: 20.80 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.42 Total: -114.99 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.05 Total: -41.38 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.73 Total: -2.38 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.77 0.62 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192178415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.432 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds