Wall clock time and date at job start Mon Mar 30 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47251 * 2 1 4 4 H 1.09002 * 109.47655 * 304.90292 * 3 2 1 5 5 C 1.50701 * 109.47386 * 184.90104 * 3 2 1 6 6 H 1.08003 * 119.99952 * 245.45419 * 5 3 2 7 7 C 1.37870 * 120.00034 * 65.44964 * 5 3 2 8 8 N 1.31519 * 119.99890 * 9.47413 * 7 5 3 9 9 Si 1.86799 * 120.00088 * 189.47115 * 7 5 3 10 10 H 1.48503 * 109.46912 * 84.99564 * 9 7 5 11 11 H 1.48499 * 109.47120 * 204.99506 * 9 7 5 12 12 H 1.48497 * 109.47010 * 324.99685 * 9 7 5 13 13 N 1.46503 * 109.47011 * 64.89761 * 3 2 1 14 14 C 1.34778 * 120.00140 * 274.99668 * 13 3 2 15 15 O 1.21545 * 119.99802 * 0.02562 * 14 13 3 16 16 C 1.47860 * 119.99817 * 179.97438 * 14 13 3 17 17 C 1.39697 * 120.07054 * 180.02562 * 16 14 13 18 18 C 1.38060 * 120.15992 * 179.72279 * 17 16 14 19 19 C 1.50705 * 119.84655 * 179.97438 * 18 17 16 20 20 C 1.38088 * 120.30419 * 0.02562 * 18 17 16 21 21 C 1.39713 * 120.13813 * 359.97438 * 20 18 17 22 22 C 1.43202 * 120.07711 * 179.97438 * 21 20 18 23 23 N 8.01108 * 94.52949 * 59.51134 * 2 1 3 24 24 C 1.39295 * 120.07205 * 359.73131 * 16 14 13 25 25 H 1.09007 * 109.46896 * 60.00142 * 1 2 3 26 26 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47295 * 300.00421 * 1 2 3 28 28 H 1.09004 * 109.47017 * 239.99838 * 2 1 3 29 29 H 1.08999 * 109.46911 * 120.00136 * 2 1 3 30 30 H 0.97002 * 119.99652 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99419 * 95.00357 * 13 3 2 32 32 H 1.07997 * 119.92263 * 359.75185 * 17 16 14 33 33 H 1.08995 * 109.46808 * 90.00729 * 19 18 17 34 34 H 1.09005 * 109.46798 * 210.00658 * 19 18 17 35 35 H 1.08993 * 109.46954 * 330.00066 * 19 18 17 36 36 H 1.08007 * 119.92885 * 179.97438 * 20 18 17 37 37 H 1.07997 * 120.15012 * 0.27001 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1494 1.8090 0.6939 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7115 -2.3326 9 14 5.9919 0.7327 -1.3289 10 1 6.3290 -0.6067 -0.7834 11 1 6.4619 0.8274 -2.7344 12 1 6.6562 1.7808 -0.5131 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3419 2.6322 0.4277 16 6 0.0395 3.3265 2.6262 17 6 -1.2223 3.9143 2.7449 18 6 -1.5937 4.5272 3.9249 19 6 -2.9563 5.1596 4.0450 20 6 -0.7219 4.5644 4.9952 21 6 0.5430 3.9806 4.8902 22 6 1.4462 4.0204 6.0008 23 7 2.1627 4.0519 6.8818 24 6 0.9238 3.3594 3.7019 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8312 0.3852 -3.1430 31 1 2.2687 2.1242 1.9977 32 1 -1.9090 3.8888 1.9118 33 1 -3.6678 4.4218 4.4160 34 1 -2.9076 5.9985 4.7393 35 1 -3.2790 5.5159 3.0668 36 1 -1.0186 5.0459 5.9153 37 1 1.9002 2.9061 3.6154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195437742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:07 Heat of formation + Delta-G solvation = -14.756007 kcal Electronic energy + Delta-G solvation = -19988.665640 eV Core-core repulsion = 16922.749049 eV Total energy + Delta-G solvation = -3065.916591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33691 -39.80563 -37.60521 -36.87525 -34.59261 -33.88109 -32.96751 -32.10597 -29.01890 -27.82173 -25.62830 -24.70918 -24.18145 -21.93395 -20.99925 -19.69900 -18.47439 -17.59007 -17.42066 -16.95461 -16.49709 -16.26531 -15.89361 -15.23143 -15.05533 -14.59061 -14.41144 -14.27352 -14.15557 -13.98715 -13.81610 -13.43206 -13.27937 -12.99261 -12.90981 -12.67632 -12.61782 -12.56754 -12.36801 -12.18164 -12.07132 -11.60549 -11.09086 -10.76559 -10.52219 -10.06993 -9.79991 -9.62065 -8.19230 -6.31734 -0.35901 -0.05582 1.44650 1.45704 1.54581 1.55272 1.62822 2.24290 2.34480 2.56376 2.75123 2.89999 3.12979 3.70231 3.75361 4.09575 4.16105 4.24726 4.41536 4.49098 4.56064 4.66250 4.74836 4.88618 4.97415 5.08145 5.10718 5.20853 5.27593 5.30799 5.43294 5.46307 5.53649 5.61053 5.72951 5.77265 5.91360 6.07579 6.38276 6.76250 6.94709 7.33275 7.52349 8.89342 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.004796 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.006449 B = 5837.105725 C = 6867.790683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.008 0.992 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.541 3.459 15 O -0.578 6.578 16 C -0.135 4.135 17 C -0.039 4.039 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.035 4.035 21 C -0.034 4.034 22 C 0.282 3.718 23 N -0.455 5.455 24 C -0.044 4.044 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.169 0.831 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 7.054 14.297 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.349 5.349 14 C 0.329 3.671 15 O -0.460 6.460 16 C -0.138 4.138 17 C -0.058 4.058 18 C -0.085 4.085 19 C -0.170 4.170 20 C -0.055 4.055 21 C -0.037 4.037 22 C -0.033 4.033 23 N -0.131 5.131 24 C -0.065 4.065 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.155 0.845 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.187 0.813 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.898 6.998 14.795 19.127 hybrid contribution 1.234 -0.447 -0.813 1.544 sum -8.665 6.550 13.982 17.705 Atomic orbital electron populations 1.21692 0.96484 0.99460 1.00628 1.21713 0.94295 0.98879 1.00387 1.18424 0.93697 0.89183 0.81413 0.97361 1.21526 0.91409 1.43850 1.02143 0.91161 1.25696 1.02851 0.94794 0.94602 1.70122 1.37654 1.44657 1.02720 0.85498 0.79618 0.78956 0.77121 1.19681 1.21329 1.19025 1.46238 1.15340 1.55602 1.17711 1.18665 0.82067 0.78617 0.87797 1.90732 1.52459 1.61349 1.41432 1.19809 0.96917 1.03720 0.93389 1.21537 0.93915 0.92059 0.98337 1.20040 0.98321 0.98370 0.91805 1.20909 0.90721 1.01206 1.04191 1.21543 0.89764 0.94476 0.99733 1.15757 0.93326 1.05810 0.88834 1.25647 0.92594 0.92553 0.92516 1.81292 1.10079 1.09892 1.11841 1.21368 0.99287 0.95278 0.90577 0.95254 0.93338 0.93382 0.92957 0.93374 0.92598 0.76344 0.84528 0.89438 0.89028 0.90789 0.81344 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.51 71.98 0.61 -4.77 16 2 C -0.11 -5.38 5.50 30.59 0.17 -5.21 16 3 C 0.28 13.78 2.11 44.24 0.09 13.88 16 4 H 0.01 0.51 7.52 -2.39 -0.02 0.49 16 5 C -0.55 -28.70 8.66 25.60 0.22 -28.48 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.14 5.16 84.65 0.44 1.58 16 8 N -0.91 -52.18 12.16 21.45 0.26 -51.92 16 9 Si 0.96 41.83 29.55 68.60 2.03 43.86 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -27.94 4.97 -448.97 -2.23 -30.17 16 14 C 0.54 20.42 6.34 86.79 0.55 20.97 16 15 O -0.58 -26.01 13.47 -3.86 -0.05 -26.06 16 16 C -0.14 -3.67 5.87 -20.12 -0.12 -3.79 16 17 C -0.04 -0.86 9.23 22.58 0.21 -0.65 16 18 C -0.09 -1.26 5.87 -19.94 -0.12 -1.38 16 19 C -0.11 -0.98 10.00 71.24 0.71 -0.27 16 20 C -0.03 -0.47 9.39 22.59 0.21 -0.25 16 21 C -0.03 -0.62 5.73 -21.40 -0.12 -0.74 16 22 C 0.28 6.01 15.32 88.33 1.35 7.36 16 23 N -0.46 -11.91 18.54 19.00 0.35 -11.56 16 24 C -0.04 -0.98 9.24 22.80 0.21 -0.77 16 25 H 0.03 1.36 7.84 -2.38 -0.02 1.34 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.98 5.65 -2.39 -0.01 1.96 16 28 H 0.05 2.76 6.80 -2.38 -0.02 2.75 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 13.58 6.55 -92.71 -0.61 12.97 16 32 H 0.14 3.22 7.64 -2.91 -0.02 3.19 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.44 8.08 -2.38 -0.02 0.42 16 35 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.14 2.98 6.40 -2.91 -0.02 2.96 16 Total: -1.00 -67.18 320.03 5.27 -61.90 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.49 Total: 16.48 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.42 Total: -2.53 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -1.62 Total: -93.65 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.18 5.27 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195437742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.148 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds