Wall clock time and date at job start Mon Mar 30 2020 01:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21225 * 119.99538 * 2 1 4 4 N 1.34773 * 120.00345 * 180.02562 * 2 1 3 5 5 C 1.37508 * 125.16262 * 0.02562 * 4 2 1 6 6 C 1.33995 * 109.88492 * 179.97438 * 5 4 2 7 7 C 1.50702 * 126.41089 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47125 * 260.02645 * 7 6 5 9 9 C 1.46500 * 120.00067 * 270.00405 * 8 7 6 10 10 C 1.36935 * 120.00236 * 90.00110 * 8 7 6 11 11 H 1.08005 * 119.99709 * 20.37191 * 10 8 7 12 12 C 1.38817 * 120.00220 * 200.37790 * 10 8 7 13 13 N 1.31619 * 119.99831 * 14.97382 * 12 10 8 14 14 Si 1.86795 * 119.99747 * 194.97678 * 12 10 8 15 15 H 1.48505 * 109.47234 * 84.99987 * 14 12 10 16 16 H 1.48496 * 109.47247 * 204.99726 * 14 12 10 17 17 H 1.48495 * 109.47397 * 325.00075 * 14 12 10 18 18 C 1.46714 * 107.17159 * 0.02562 * 6 5 4 19 19 C 1.39549 * 133.89426 * 180.02562 * 18 6 5 20 20 C 1.37709 * 119.66076 * 179.97438 * 19 18 6 21 21 C 1.38748 * 120.35599 * 359.97372 * 20 19 18 22 22 C 1.37851 * 120.62681 * 0.03143 * 21 20 19 23 23 C 1.38359 * 125.16822 * 179.72208 * 4 2 1 24 24 H 1.09004 * 109.46879 * 239.99341 * 1 2 3 25 25 H 1.08999 * 109.47130 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46912 * 119.99744 * 1 2 3 27 27 H 1.07995 * 125.06062 * 359.97438 * 5 4 2 28 28 H 1.09000 * 109.47410 * 20.02810 * 7 6 5 29 29 H 1.09001 * 109.47065 * 140.03100 * 7 6 5 30 30 H 1.09002 * 109.47213 * 95.08815 * 9 8 7 31 31 H 1.08998 * 109.47332 * 215.08858 * 9 8 7 32 32 H 1.09003 * 109.46919 * 335.09147 * 9 8 7 33 33 H 0.97000 * 119.99277 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.16715 * 359.95686 * 19 18 6 35 35 H 1.07993 * 119.82023 * 180.02562 * 20 19 18 36 36 H 1.08005 * 119.68704 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.03962 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.6035 -2.4151 -0.0016 6 6 2.5556 -3.3579 -0.0024 7 6 2.3378 -4.8491 -0.0031 8 7 2.5044 -5.3676 1.3569 9 6 3.8241 -5.8072 1.8167 10 6 1.4267 -5.4413 2.1984 11 1 0.4250 -5.4403 1.7943 12 6 1.6214 -5.5173 3.5707 13 7 2.7971 -5.2257 4.0856 14 14 0.2150 -6.0334 4.6864 15 1 0.1568 -7.5156 4.7561 16 1 0.4351 -5.4822 6.0476 17 1 -1.0650 -5.5128 4.1426 18 6 3.8497 -2.6666 -0.0012 19 6 5.1769 -3.0978 -0.0018 20 6 6.1947 -2.1702 -0.0008 21 6 5.9066 -0.8130 0.0003 22 6 4.6004 -0.3724 0.0009 23 6 3.5589 -1.2917 -0.0061 24 1 -0.3633 -0.5140 0.8900 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 0.5407 -2.6068 -0.0017 28 1 1.3298 -5.0690 -0.3549 29 1 3.0644 -5.3220 -0.6638 30 1 4.3140 -4.9914 2.3484 31 1 3.7103 -6.6603 2.4855 32 1 4.4301 -6.0969 0.9581 33 1 2.9332 -5.2791 5.0445 34 1 5.4046 -4.1535 -0.0027 35 1 7.2228 -2.5010 -0.0016 36 1 6.7133 -0.0949 0.0006 37 1 4.3869 0.6863 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204407531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:19 Heat of formation + Delta-G solvation = 34.958735 kcal Electronic energy + Delta-G solvation = -20841.372993 eV Core-core repulsion = 17777.612195 eV Total energy + Delta-G solvation = -3063.760798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.93465 -39.97573 -37.94927 -37.32963 -34.11506 -32.62385 -32.01248 -30.43434 -29.65384 -27.88149 -27.51553 -24.23578 -23.52458 -23.05923 -21.29186 -20.23690 -18.68878 -18.46988 -17.62221 -17.20436 -16.79544 -16.34390 -15.75613 -15.51949 -15.39228 -15.13591 -14.64294 -14.59658 -14.47344 -13.80964 -13.53055 -13.33507 -13.23725 -13.01829 -12.80232 -12.68663 -12.54632 -12.40299 -12.15393 -11.98866 -11.88530 -11.74036 -11.24500 -10.61164 -10.54465 -9.31264 -8.91396 -8.65867 -7.76948 -5.21577 -0.07449 0.32463 1.14535 1.49142 1.51298 1.58326 1.68064 2.02426 2.56779 2.93498 3.31537 3.39564 3.79486 3.86074 3.94439 4.02035 4.18799 4.24925 4.43220 4.49339 4.50090 4.63121 4.73162 4.84232 4.90017 4.95525 5.03273 5.06440 5.20381 5.38593 5.47603 5.52573 5.63888 5.69747 5.78039 5.82141 6.07143 6.36153 6.39741 6.62556 7.19630 7.92682 8.36860 9.26515 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.006801 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.438062 B = 4116.345489 C = 5079.708349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.510 3.490 3 O -0.544 6.544 4 N -0.468 5.468 5 C 0.028 3.972 6 C -0.144 4.144 7 C 0.208 3.792 8 N -0.604 5.604 9 C 0.181 3.819 10 C -0.250 4.250 11 H 0.084 0.916 12 C -0.058 4.058 13 N -0.940 5.940 14 Si 0.963 3.037 15 H -0.287 1.287 16 H -0.306 1.306 17 H -0.262 1.262 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.135 4.135 21 C -0.105 4.105 22 C -0.130 4.130 23 C 0.058 3.942 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.208 0.792 28 H 0.077 0.923 29 H 0.066 0.934 30 H -0.003 1.003 31 H 0.014 0.986 32 H 0.031 0.969 33 H 0.243 0.757 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 6.137 -11.192 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.305 3.695 3 O -0.420 6.420 4 N -0.173 5.173 5 C -0.088 4.088 6 C -0.151 4.151 7 C 0.082 3.918 8 N -0.325 5.325 9 C 0.036 3.964 10 C -0.381 4.381 11 H 0.102 0.898 12 C -0.252 4.252 13 N -0.587 5.587 14 Si 0.793 3.207 15 H -0.214 1.214 16 H -0.233 1.233 17 H -0.187 1.187 18 C -0.103 4.103 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.041 4.041 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.224 0.776 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.146 0.854 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.947 6.894 -11.035 13.046 hybrid contribution -0.339 -0.071 1.299 1.345 sum -1.286 6.823 -9.736 11.958 Atomic orbital electron populations 1.22080 0.85271 1.07628 1.07186 1.22308 0.93433 0.80966 0.72794 1.90654 1.72359 1.31718 1.47293 1.43247 1.05103 1.07843 1.61090 1.22234 1.00246 0.80608 1.05751 1.22105 0.90444 0.98642 1.03949 1.19555 1.00999 0.85213 0.86020 1.44320 1.06156 1.70876 1.11180 1.20511 0.85264 0.96283 0.94346 1.19638 0.88039 1.42786 0.87610 0.89828 1.25743 0.98842 1.02065 0.98564 1.70289 1.24324 1.53517 1.10541 0.85328 0.79879 0.77808 0.77729 1.21400 1.23326 1.18691 1.19668 0.94855 0.91923 1.03878 1.20844 0.90483 1.00474 0.98466 1.21315 0.99961 0.92579 1.01469 1.21251 0.95217 0.96619 0.99242 1.20491 0.91542 0.98456 1.04582 1.18794 0.84153 0.95659 1.05448 0.87157 0.87006 0.85587 0.77566 0.90466 0.91552 0.98424 0.96670 0.95082 0.94813 0.85412 0.82724 0.82566 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.17 71.24 0.65 -2.30 16 2 C 0.51 15.70 7.87 87.66 0.69 16.39 16 3 O -0.54 -20.07 15.72 -2.86 -0.04 -20.12 16 4 N -0.47 -16.17 2.87 -462.61 -1.33 -17.50 16 5 C 0.03 0.93 10.52 82.84 0.87 1.80 16 6 C -0.14 -5.38 5.89 -18.61 -0.11 -5.49 16 7 C 0.21 7.77 6.23 85.63 0.53 8.30 16 8 N -0.60 -28.67 2.91 -731.29 -2.13 -30.80 16 9 C 0.18 8.79 9.02 127.77 1.15 9.95 16 10 C -0.25 -12.92 9.68 84.04 0.81 -12.11 16 11 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 12 C -0.06 -3.15 5.06 84.86 0.43 -2.72 16 13 N -0.94 -55.77 10.67 21.65 0.23 -55.54 16 14 Si 0.96 44.01 29.58 68.60 2.03 46.04 16 15 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 18 C -0.10 -3.86 6.34 -20.19 -0.13 -3.99 16 19 C -0.08 -2.92 10.10 22.46 0.23 -2.70 16 20 C -0.13 -3.92 10.03 22.27 0.22 -3.70 16 21 C -0.10 -3.05 10.02 22.30 0.22 -2.83 16 22 C -0.13 -4.59 9.54 22.34 0.21 -4.38 16 23 C 0.06 2.23 6.70 38.83 0.26 2.49 16 24 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.11 1.73 8.12 -2.39 -0.02 1.71 16 26 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.21 4.99 7.64 -2.91 -0.02 4.97 16 28 H 0.08 2.54 8.02 -2.39 -0.02 2.53 16 29 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 30 H 0.00 -0.14 7.40 -2.39 -0.02 -0.16 16 31 H 0.01 0.78 7.21 -2.39 -0.02 0.77 16 32 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.13 4.20 7.97 -2.91 -0.02 4.18 16 35 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.12 4.32 6.76 -2.91 -0.02 4.30 16 Total: -1.00 -72.26 316.53 5.88 -66.38 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.07 Total: 12.80 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.05 Total: -1.28 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.23 Total: -103.84 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.12 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.26 5.88 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204407531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.343 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds