Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47293 * 120.00173 * 2 1 3 5 5 C 1.50708 * 109.47587 * 185.00070 * 4 2 1 6 6 C 1.35446 * 126.77901 * 89.97857 * 5 4 2 7 7 C 1.41375 * 103.98638 * 180.02562 * 6 5 4 8 8 N 1.30172 * 106.39818 * 0.02562 * 7 6 5 9 9 O 1.20923 * 111.60396 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.47030 * 240.00622 * 2 1 3 11 11 C 1.39682 * 120.00239 * 84.99816 * 10 2 1 12 12 C 1.39331 * 119.95048 * 0.02562 * 11 10 2 13 13 C 1.38485 * 120.42216 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.32694 * 359.97222 * 13 12 11 15 15 C 1.40755 * 119.89291 * 0.02852 * 14 13 12 16 16 C 1.41409 * 120.20807 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00038 * 24.32198 * 16 15 14 18 18 C 1.39938 * 119.99658 * 204.32957 * 16 15 14 19 19 N 1.30824 * 120.00296 * 17.72640 * 18 16 15 20 20 Si 1.86807 * 119.99391 * 197.73174 * 18 16 15 21 21 H 1.48499 * 109.47029 * 90.00241 * 20 18 16 22 22 H 1.48505 * 109.46519 * 209.99584 * 20 18 16 23 23 H 1.48494 * 109.47310 * 329.99631 * 20 18 16 24 24 C 1.38278 * 119.94916 * 179.72623 * 11 10 2 25 25 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47040 * 299.99415 * 1 2 3 27 27 H 1.09001 * 109.47113 * 59.99288 * 1 2 3 28 28 H 1.09002 * 109.47298 * 65.00331 * 4 2 1 29 29 H 1.09000 * 109.47696 * 305.00082 * 4 2 1 30 30 H 1.08005 * 128.00551 * 0.07955 * 6 5 4 31 31 H 1.08002 * 126.79776 * 180.02562 * 7 6 5 32 32 H 0.97006 * 119.99632 * 264.99406 * 10 2 1 33 33 H 1.07993 * 119.79068 * 0.02562 * 12 11 10 34 34 H 1.08003 * 119.83567 * 180.02562 * 13 12 11 35 35 H 1.07995 * 120.05606 * 179.97438 * 14 13 12 36 36 H 0.96991 * 120.00125 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.16483 * 359.97339 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.2610 0.3626 1.9143 7 6 5.6050 -0.0097 1.6823 8 7 5.5668 -1.1170 0.9989 9 8 4.4300 -1.4687 0.7842 10 7 2.0183 -0.6905 -1.1962 11 6 2.1517 0.0064 -2.3994 12 6 1.8205 1.3584 -2.4606 13 6 1.9485 2.0587 -3.6485 14 6 2.4053 1.4259 -4.7828 15 6 2.7437 0.0605 -4.7362 16 6 3.2131 -0.5962 -5.8973 17 1 3.6818 -0.0278 -6.6869 18 6 3.0700 -1.9825 -6.0232 19 7 2.2185 -2.6239 -5.2648 20 14 4.0952 -2.9174 -7.2741 21 1 5.3665 -3.3556 -6.6440 22 1 3.3397 -4.1067 -7.7434 23 1 4.3941 -2.0333 -8.4291 24 6 2.6180 -0.6450 -3.5265 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 3.8929 1.2262 2.4483 31 1 6.4884 0.5197 2.0076 32 1 2.2491 -1.6317 -1.1527 33 1 1.4617 1.8635 -1.5761 34 1 1.6894 3.1065 -3.6851 35 1 2.5030 1.9761 -5.7069 36 1 2.1192 -3.5847 -5.3523 37 1 2.8801 -1.6917 -3.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205848534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = 75.578774 kcal Electronic energy + Delta-G solvation = -20385.625644 eV Core-core repulsion = 17323.626263 eV Total energy + Delta-G solvation = -3061.999381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.77476 -38.18918 -36.28593 -33.85697 -33.50311 -32.46609 -30.67977 -29.39822 -27.10537 -26.85853 -25.12845 -23.37570 -21.93136 -21.30697 -20.59839 -19.59972 -17.38466 -17.32095 -17.18026 -15.81578 -15.26770 -15.10418 -14.68621 -14.45013 -13.67050 -13.42382 -13.30580 -13.03617 -12.63250 -12.36363 -12.14286 -12.07531 -11.61637 -11.52053 -11.28512 -11.11964 -11.02643 -10.79294 -10.57420 -10.35043 -10.29582 -9.58542 -9.39383 -9.28733 -9.18077 -8.74238 -7.26540 -6.68573 -6.13283 -4.26552 1.59793 2.38054 2.91198 3.13724 3.17188 3.19513 3.27402 3.38459 4.02003 4.19903 4.45213 4.62946 4.77195 4.92090 5.06665 5.16996 5.37307 5.51468 5.64832 5.71225 5.75765 5.88393 5.90989 6.08347 6.19724 6.31207 6.47083 6.63586 6.92349 7.14730 7.18600 7.42975 7.48125 7.84986 7.99892 8.14595 8.22326 8.37975 8.53668 8.73631 8.88466 9.06153 9.16419 10.30336 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.005469 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.872717 B = 5118.662063 C = 5805.997953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.161 3.839 3 H 0.078 0.922 4 C -0.051 4.051 5 C -0.011 4.011 6 C -0.243 4.243 7 C -0.015 4.015 8 N -0.366 5.366 9 O 0.105 5.895 10 N -0.754 5.754 11 C 0.219 3.781 12 C -0.301 4.301 13 C -0.067 4.067 14 C -0.258 4.258 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.792 5.792 20 Si 0.903 3.097 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.229 4.229 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.168 0.832 31 H 0.187 0.813 32 H 0.390 0.610 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.277 0.723 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 2.247 13.965 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.053 3.947 3 H 0.096 0.904 4 C -0.090 4.090 5 C -0.075 4.075 6 C -0.264 4.264 7 C -0.193 4.193 8 N -0.069 5.069 9 O 0.038 5.962 10 N -0.388 5.388 11 C 0.120 3.880 12 C -0.323 4.323 13 C -0.086 4.086 14 C -0.279 4.279 15 C 0.136 3.864 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.417 5.417 20 Si 0.728 3.272 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.253 4.253 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.186 0.814 31 H 0.204 0.796 32 H 0.224 0.776 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.049 1.339 13.598 13.663 hybrid contribution 0.152 -0.045 -0.142 0.213 sum 0.103 1.294 13.455 13.518 Atomic orbital electron populations 1.22292 0.95912 1.02232 1.02083 1.20644 0.93339 0.96833 0.83837 0.90377 1.20621 0.84247 1.03822 1.00280 1.24441 0.94968 0.91550 0.96514 1.22483 0.92510 1.02918 1.08511 1.24979 0.99129 0.94978 1.00208 1.73889 0.99931 1.16145 1.16891 1.84835 1.10492 1.43217 1.57635 1.44486 1.75741 1.11590 1.06970 1.17590 0.94552 0.90832 0.84976 1.19882 1.21132 0.93567 0.97746 1.20274 0.98394 0.96716 0.93202 1.20854 1.13617 0.96539 0.96886 1.17329 0.86638 0.90533 0.91949 1.19558 1.34869 0.91859 1.03204 0.90644 1.25862 0.93622 0.98177 0.96225 1.69854 1.26783 1.09949 1.35137 0.86398 0.80603 0.79088 0.81093 1.19387 1.20441 1.18710 1.20730 1.13026 1.00653 0.90860 0.92501 0.92715 0.91312 0.89089 0.87627 0.81418 0.79622 0.77601 0.89608 0.89773 0.89500 0.91211 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.42 37.16 0.35 -1.73 16 2 C 0.16 2.21 2.25 -67.94 -0.15 2.06 16 3 H 0.08 1.16 6.47 -51.93 -0.34 0.82 16 4 C -0.05 -0.54 5.32 -27.88 -0.15 -0.68 16 5 C -0.01 -0.14 6.47 -35.30 -0.23 -0.37 16 6 C -0.24 -2.88 11.09 -39.39 -0.44 -3.32 16 7 C -0.01 -0.19 12.17 -17.06 -0.21 -0.40 16 8 N -0.37 -6.00 12.07 30.35 0.37 -5.63 16 9 O 0.11 1.69 11.20 17.17 0.19 1.88 16 10 N -0.75 -13.76 4.96 -52.22 -0.26 -14.02 16 11 C 0.22 5.04 6.63 -83.86 -0.56 4.48 16 12 C -0.30 -6.73 8.86 -39.08 -0.35 -7.08 16 13 C -0.07 -1.56 10.01 -39.69 -0.40 -1.95 16 14 C -0.26 -6.63 9.79 -38.83 -0.38 -7.01 16 15 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 16 C -0.46 -12.81 9.05 -37.74 -0.34 -13.15 16 17 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 18 C 0.08 2.04 5.14 -17.34 -0.09 1.95 16 19 N -0.79 -20.95 10.96 55.55 0.61 -20.34 16 20 Si 0.90 19.38 29.60 -169.99 -5.03 14.35 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.23 -6.05 8.53 -38.67 -0.33 -6.38 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.19 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.39 7.03 8.61 -40.82 -0.35 6.68 16 33 H 0.09 1.70 6.08 -52.49 -0.32 1.38 16 34 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.12 3.20 6.17 -52.48 -0.32 2.88 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -30.46 316.44 -7.88 -38.34 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.66 Total: 11.00 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -3.86 Total: -30.35 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.72 Total: -40.00 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.19 Total: 1.88 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.46 -7.88 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205848534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.915 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds