Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47293 * 120.00173 * 2 1 3 5 5 C 1.50708 * 109.47587 * 185.00070 * 4 2 1 6 6 C 1.35446 * 126.77901 * 89.97857 * 5 4 2 7 7 C 1.41375 * 103.98638 * 180.02562 * 6 5 4 8 8 N 1.30172 * 106.39818 * 0.02562 * 7 6 5 9 9 O 1.20923 * 111.60396 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.47030 * 240.00622 * 2 1 3 11 11 C 1.39682 * 120.00239 * 84.99816 * 10 2 1 12 12 C 1.39331 * 119.95048 * 0.02562 * 11 10 2 13 13 C 1.38485 * 120.42216 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.32694 * 359.97222 * 13 12 11 15 15 C 1.40755 * 119.89291 * 0.02852 * 14 13 12 16 16 C 1.41409 * 120.20807 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00038 * 24.32198 * 16 15 14 18 18 C 1.39938 * 119.99658 * 204.32957 * 16 15 14 19 19 N 1.30824 * 120.00296 * 17.72640 * 18 16 15 20 20 Si 1.86807 * 119.99391 * 197.73174 * 18 16 15 21 21 H 1.48499 * 109.47029 * 90.00241 * 20 18 16 22 22 H 1.48505 * 109.46519 * 209.99584 * 20 18 16 23 23 H 1.48494 * 109.47310 * 329.99631 * 20 18 16 24 24 C 1.38278 * 119.94916 * 179.72623 * 11 10 2 25 25 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47040 * 299.99415 * 1 2 3 27 27 H 1.09001 * 109.47113 * 59.99288 * 1 2 3 28 28 H 1.09002 * 109.47298 * 65.00331 * 4 2 1 29 29 H 1.09000 * 109.47696 * 305.00082 * 4 2 1 30 30 H 1.08005 * 128.00551 * 0.07955 * 6 5 4 31 31 H 1.08002 * 126.79776 * 180.02562 * 7 6 5 32 32 H 0.97006 * 119.99632 * 264.99406 * 10 2 1 33 33 H 1.07993 * 119.79068 * 0.02562 * 12 11 10 34 34 H 1.08003 * 119.83567 * 180.02562 * 13 12 11 35 35 H 1.07995 * 120.05606 * 179.97438 * 14 13 12 36 36 H 0.96991 * 120.00125 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.16483 * 359.97339 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.2610 0.3626 1.9143 7 6 5.6050 -0.0097 1.6823 8 7 5.5668 -1.1170 0.9989 9 8 4.4300 -1.4687 0.7842 10 7 2.0183 -0.6905 -1.1962 11 6 2.1517 0.0064 -2.3994 12 6 1.8205 1.3584 -2.4606 13 6 1.9485 2.0587 -3.6485 14 6 2.4053 1.4259 -4.7828 15 6 2.7437 0.0605 -4.7362 16 6 3.2131 -0.5962 -5.8973 17 1 3.6818 -0.0278 -6.6869 18 6 3.0700 -1.9825 -6.0232 19 7 2.2185 -2.6239 -5.2648 20 14 4.0952 -2.9174 -7.2741 21 1 5.3665 -3.3556 -6.6440 22 1 3.3397 -4.1067 -7.7434 23 1 4.3941 -2.0333 -8.4291 24 6 2.6180 -0.6450 -3.5265 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 3.8929 1.2262 2.4483 31 1 6.4884 0.5197 2.0076 32 1 2.2491 -1.6317 -1.1527 33 1 1.4617 1.8635 -1.5761 34 1 1.6894 3.1065 -3.6851 35 1 2.5030 1.9761 -5.7069 36 1 2.1192 -3.5847 -5.3523 37 1 2.8801 -1.6917 -3.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205848534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = 57.997756 kcal Electronic energy + Delta-G solvation = -20386.388014 eV Core-core repulsion = 17323.626263 eV Total energy + Delta-G solvation = -3062.761751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.81285 -39.82675 -37.75301 -35.46544 -34.76881 -33.82034 -31.95712 -31.33025 -28.65373 -27.95432 -27.05900 -24.38420 -23.30246 -22.78263 -22.05938 -21.17899 -19.07486 -18.47048 -18.36937 -17.51265 -16.69605 -16.48615 -16.21100 -16.00613 -14.93055 -14.69026 -14.65195 -14.27083 -14.17003 -13.92574 -13.58648 -13.36518 -13.14292 -12.83566 -12.78422 -12.58047 -12.47545 -12.19879 -12.13357 -11.84775 -11.48939 -11.37590 -11.24689 -11.08317 -10.51498 -10.21589 -9.23035 -8.61944 -7.86076 -6.31493 0.59220 1.09292 1.35885 1.36273 1.42496 1.48859 1.58473 2.21734 2.27822 2.80684 2.85672 3.55365 3.68071 3.87908 3.93078 4.14860 4.22280 4.43016 4.53761 4.58631 4.72993 4.81017 4.85372 4.88068 4.94072 5.04613 5.12298 5.20283 5.25225 5.34347 5.45460 5.52316 5.62981 5.98800 6.13352 6.23205 6.29357 6.60011 6.95814 7.07507 7.10829 7.27074 7.36439 8.38443 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.005469 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.872717 B = 5118.662063 C = 5805.997953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.075 0.925 4 C -0.041 4.041 5 C -0.025 4.025 6 C -0.235 4.235 7 C -0.017 4.017 8 N -0.411 5.411 9 O 0.071 5.929 10 N -0.750 5.750 11 C 0.227 3.773 12 C -0.298 4.298 13 C -0.064 4.064 14 C -0.289 4.289 15 C 0.107 3.893 16 C -0.507 4.507 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.977 3.023 21 H -0.267 1.267 22 H -0.265 1.265 23 H -0.259 1.259 24 C -0.261 4.261 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.151 0.849 30 H 0.204 0.796 31 H 0.214 0.786 32 H 0.389 0.611 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.284 0.716 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 3.186 16.279 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.079 4.079 5 C -0.089 4.089 6 C -0.256 4.256 7 C -0.195 4.195 8 N -0.118 5.118 9 O 0.009 5.991 10 N -0.381 5.381 11 C 0.126 3.874 12 C -0.321 4.321 13 C -0.083 4.083 14 C -0.310 4.310 15 C 0.104 3.896 16 C -0.536 4.536 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.798 3.202 21 H -0.192 1.192 22 H -0.189 1.189 23 H -0.183 1.183 24 C -0.286 4.286 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.169 0.831 30 H 0.221 0.779 31 H 0.231 0.769 32 H 0.222 0.778 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.817 2.275 15.954 16.137 hybrid contribution 0.323 -0.234 -0.677 0.786 sum -0.494 2.042 15.277 15.421 Atomic orbital electron populations 1.22221 0.94411 1.02586 1.02653 1.20944 0.94340 0.96553 0.83138 0.90724 1.20726 0.82633 1.04458 1.00111 1.25043 0.95892 0.91524 0.96395 1.22971 0.91556 1.03320 1.07753 1.25637 1.01065 0.94056 0.98696 1.73890 1.00594 1.18207 1.19133 1.84783 1.10946 1.44590 1.58798 1.44689 1.74815 1.11602 1.07014 1.17692 0.92580 0.91390 0.85759 1.20251 1.19925 0.93220 0.98655 1.20663 0.96722 0.98347 0.92546 1.21003 1.15587 0.96254 0.98156 1.17723 0.87443 0.91813 0.92641 1.19795 1.36847 0.93283 1.03725 0.91307 1.26676 0.94288 0.98450 0.98305 1.69911 1.27693 1.10520 1.36538 0.85297 0.78693 0.77831 0.78413 1.19168 1.18949 1.18269 1.20650 1.15751 0.99966 0.92199 0.92343 0.88698 0.94114 0.88304 0.83096 0.77866 0.76898 0.77791 0.86296 0.86415 0.89541 0.90523 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.42 71.98 0.68 -2.76 16 2 C 0.16 3.81 2.25 44.99 0.10 3.91 16 3 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 4 C -0.04 -0.71 5.32 29.85 0.16 -0.56 16 5 C -0.02 -0.59 6.47 25.04 0.16 -0.43 16 6 C -0.23 -4.82 11.09 22.40 0.25 -4.57 16 7 C -0.02 -0.41 12.17 85.71 1.04 0.63 16 8 N -0.41 -13.44 12.07 -59.27 -0.72 -14.16 16 9 O 0.07 2.28 11.20 71.61 0.80 3.08 16 10 N -0.75 -26.82 4.96 -319.14 -1.58 -28.41 16 11 C 0.23 10.49 6.63 38.16 0.25 10.75 16 12 C -0.30 -12.91 8.86 22.59 0.20 -12.71 16 13 C -0.06 -2.93 10.01 22.20 0.22 -2.71 16 14 C -0.29 -15.27 9.79 22.75 0.22 -15.04 16 15 C 0.11 6.18 5.57 -21.31 -0.12 6.06 16 16 C -0.51 -29.37 9.05 23.46 0.21 -29.16 16 17 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 18 C 0.04 2.02 5.14 85.25 0.44 2.45 16 19 N -0.82 -45.12 10.96 21.82 0.24 -44.88 16 20 Si 0.98 40.89 29.60 68.60 2.03 42.92 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.26 -14.40 8.53 22.86 0.20 -14.20 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.12 7.70 -2.39 -0.02 1.10 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.21 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.39 14.13 8.61 -92.70 -0.80 13.33 16 33 H 0.12 4.32 6.08 -2.91 -0.02 4.30 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 37 H 0.09 5.51 6.17 -2.91 -0.02 5.49 16 Total: -1.00 -70.91 316.44 5.08 -65.83 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.29 Total: 33.94 kcal Atomic # 6 Polarization: -62.36 SS G_CDS: 4.02 Total: -58.34 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.06 Total: -87.44 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.80 Total: 3.08 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -70.91 5.08 -65.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205848534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.830 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds