Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.03631 * 2 1 4 4 C 1.35318 * 107.74606 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04310 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47224 * 89.99758 * 5 4 3 7 7 C 1.42898 * 113.99816 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47282 * 329.99851 * 7 6 5 9 9 C 1.50700 * 109.46910 * 89.99805 * 7 6 5 10 10 H 1.08001 * 120.00089 * 56.08299 * 9 7 6 11 11 C 1.37880 * 120.00094 * 236.07252 * 9 7 6 12 12 N 1.31512 * 120.00122 * 174.56153 * 11 9 7 13 13 Si 1.86800 * 119.99734 * 354.56912 * 11 9 7 14 14 H 1.48500 * 109.47370 * 85.21940 * 13 11 9 15 15 H 1.48506 * 109.46621 * 205.21513 * 13 11 9 16 16 H 1.48499 * 109.47243 * 325.21422 * 13 11 9 17 17 C 1.50700 * 109.47003 * 210.00077 * 7 6 5 18 18 C 1.38242 * 119.99809 * 322.40567 * 17 7 6 19 19 C 1.38233 * 119.99630 * 179.81042 * 18 17 7 20 20 C 1.38237 * 120.00221 * 0.40157 * 19 18 17 21 21 C 1.38236 * 119.99838 * 359.85567 * 20 19 18 22 22 C 1.38230 * 120.00014 * 359.95211 * 21 20 19 23 23 C 1.39874 * 107.92030 * 359.97438 * 4 3 2 24 24 N 1.30842 * 108.19929 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46980 * 89.99772 * 1 2 3 26 26 H 1.08999 * 109.47200 * 210.00242 * 1 2 3 27 27 H 1.09009 * 109.47264 * 330.00052 * 1 2 3 28 28 H 1.07995 * 126.13143 * 0.26288 * 3 2 1 29 29 H 1.09000 * 109.46785 * 209.99772 * 5 4 3 30 30 H 1.09000 * 109.46694 * 329.99740 * 5 4 3 31 31 H 0.96993 * 120.00322 * 180.02562 * 12 11 9 32 32 H 1.07994 * 119.99654 * 359.97438 * 18 17 7 33 33 H 1.08002 * 120.00000 * 180.22958 * 19 18 17 34 34 H 1.07997 * 119.99907 * 179.83121 * 20 19 18 35 35 H 1.07995 * 120.00095 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99882 * 180.02562 * 22 21 20 37 37 H 1.07995 * 125.90160 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0013 6 8 5.1557 1.8233 1.3457 7 6 6.3127 2.6544 1.4577 8 1 6.9632 2.4893 0.5989 9 6 5.8905 4.1005 1.4975 10 1 5.1900 4.4381 2.2469 11 6 6.3986 4.9926 0.5771 12 7 5.9509 6.2287 0.5430 13 14 7.7228 4.4453 -0.6214 14 1 7.0881 3.8120 -1.8051 15 1 8.5150 5.6240 -1.0557 16 1 8.6182 3.4651 0.0440 17 6 7.0557 2.3130 2.7236 18 6 6.3549 1.9922 3.8713 19 6 7.0365 1.6752 5.0313 20 6 8.4188 1.6871 5.0461 21 6 9.1194 2.0130 3.8999 22 6 8.4379 2.3261 2.7388 23 6 3.5347 -0.7322 -0.0003 24 7 2.2891 -1.1328 -0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.9282 2.1193 0.0040 29 1 5.5818 1.0339 -0.5155 30 1 4.5440 2.4800 -0.5153 31 1 6.3081 6.8562 -0.1047 32 1 5.2751 1.9866 3.8607 33 1 6.4891 1.4209 5.9270 34 1 8.9512 1.4421 5.9532 35 1 10.1993 2.0227 3.9115 36 1 8.9854 2.5804 1.8431 37 1 4.4053 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222430906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = 61.933942 kcal Electronic energy + Delta-G solvation = -20146.132504 eV Core-core repulsion = 17083.541438 eV Total energy + Delta-G solvation = -3062.591065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90445 -38.62109 -36.60188 -33.35336 -32.68776 -31.31850 -30.26081 -30.05057 -27.51245 -26.87857 -24.46574 -22.71602 -21.81695 -20.83584 -20.09818 -19.96831 -17.22365 -16.65658 -16.17276 -15.69728 -15.14079 -14.82874 -14.46491 -14.17607 -13.92488 -13.64198 -13.25901 -12.89409 -12.76280 -12.68568 -12.49241 -12.42650 -12.02467 -11.82405 -11.45877 -11.02109 -10.87241 -10.54777 -10.42378 -10.17182 -9.79310 -9.43330 -9.19575 -8.77543 -8.45508 -8.21292 -8.18359 -7.75779 -6.25934 -4.27337 2.08589 2.11656 2.15503 2.69359 3.01584 3.14674 3.21517 3.24616 4.23004 4.51542 4.62376 4.93689 5.11224 5.13503 5.16732 5.31061 5.34782 5.53849 5.59915 5.72327 5.77069 5.82331 6.02560 6.11138 6.23041 6.33025 6.34170 6.57170 6.60839 6.74881 6.81415 6.89568 7.15079 7.20384 7.25664 7.41997 7.49797 7.75295 7.89872 8.21336 8.49279 8.87958 9.36294 10.86441 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.006247 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.001875 B = 4481.009161 C = 5731.117327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.384 5.384 3 C 0.074 3.926 4 C -0.224 4.224 5 C 0.146 3.854 6 O -0.388 6.388 7 C 0.212 3.788 8 H 0.031 0.969 9 C -0.519 4.519 10 H 0.081 0.919 11 C 0.079 3.921 12 N -0.884 5.884 13 Si 0.864 3.136 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.260 1.260 17 C -0.032 4.032 18 C -0.099 4.099 19 C -0.127 4.127 20 C -0.147 4.147 21 C -0.125 4.125 22 C -0.129 4.129 23 C 0.063 3.937 24 N -0.310 5.310 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.177 0.823 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.267 0.733 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -10.088 -0.072 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.167 5.167 3 C -0.072 4.072 4 C -0.236 4.236 5 C 0.068 3.932 6 O -0.308 6.308 7 C 0.156 3.844 8 H 0.049 0.951 9 C -0.556 4.556 10 H 0.099 0.901 11 C -0.125 4.125 12 N -0.521 5.521 13 Si 0.691 3.309 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.033 4.033 18 C -0.117 4.117 19 C -0.146 4.146 20 C -0.165 4.165 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.124 4.124 24 N -0.131 5.131 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.194 0.806 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.785 -10.971 -0.007 11.969 hybrid contribution 1.377 0.904 -0.820 1.840 sum -3.408 -10.067 -0.827 10.660 Atomic orbital electron populations 1.21782 0.74641 1.04278 1.02958 1.48405 1.06385 1.04004 1.57866 1.22439 0.90887 0.93316 1.00558 1.20027 0.94430 0.93676 1.15427 1.20291 0.91270 0.95719 0.85961 1.87878 1.48172 1.70416 1.24351 1.19038 0.84062 0.90610 0.90654 0.95096 1.21290 1.27298 0.90625 1.16425 0.90065 1.25087 0.95963 0.94916 0.96555 1.69886 1.41825 1.04449 1.35920 0.87088 0.83083 0.78822 0.81914 1.19626 1.20891 1.18535 1.20212 0.93018 0.93274 0.96750 1.20943 1.00190 0.98581 0.92012 1.21051 0.94301 1.01371 0.97831 1.20882 0.94375 1.03495 0.97754 1.20924 0.98932 1.01095 0.93317 1.21000 0.94066 1.01379 0.98261 1.23780 0.94957 0.94733 0.98883 1.77264 1.01718 1.08394 1.25767 0.91130 0.89628 0.89541 0.80631 0.94304 0.92624 0.92259 0.86066 0.87133 0.87286 0.87094 0.86722 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 11.47 59.85 0.69 1.65 16 2 N -0.38 -5.53 4.01 -68.16 -0.27 -5.80 16 3 C 0.07 1.15 11.40 -17.22 -0.20 0.95 16 4 C -0.22 -3.91 5.73 -105.05 -0.60 -4.51 16 5 C 0.15 2.85 6.22 36.01 0.22 3.07 16 6 O -0.39 -8.76 9.19 -35.23 -0.32 -9.08 16 7 C 0.21 5.04 2.26 -29.03 -0.07 4.97 16 8 H 0.03 0.73 4.33 -51.93 -0.22 0.50 16 9 C -0.52 -14.19 9.17 -34.44 -0.32 -14.50 16 10 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 13 Si 0.86 20.18 26.95 -169.99 -4.58 15.60 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.26 -5.73 5.42 56.52 0.31 -5.43 16 17 C -0.03 -0.71 4.97 -104.62 -0.52 -1.23 16 18 C -0.10 -2.05 9.36 -39.58 -0.37 -2.42 16 19 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 20 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16 23 C 0.06 1.01 11.96 -17.36 -0.21 0.81 16 24 N -0.31 -5.06 12.58 30.63 0.39 -4.67 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.18 2.38 8.06 -52.49 -0.42 1.96 16 29 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.12 2.54 7.71 -52.49 -0.40 2.13 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.11 2.30 6.69 -52.48 -0.35 1.94 16 37 H 0.18 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 320.18 15.07 4.82 4.82 Total: -1.00 -31.99 320.18 -7.09 -39.08 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.86 Total: 5.29 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -3.04 Total: -20.22 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.89 Total: -35.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.32 Total: -9.08 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.58 Total: 15.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.99 -7.09 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222430906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.014 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds