Wall clock time and date at job start Mon Mar 30 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34948 * 126.04021 * 2 1 4 4 C 1.35311 * 107.74734 * 180.14862 * 3 2 1 5 5 C 1.50695 * 126.03949 * 179.87631 * 4 3 2 6 6 O 1.42898 * 109.47082 * 269.70890 * 5 4 3 7 7 C 1.42894 * 114.00297 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47379 * 29.99735 * 7 6 5 9 9 C 1.50702 * 109.46934 * 270.00116 * 7 6 5 10 10 H 1.07994 * 120.00135 * 325.18940 * 9 7 6 11 11 C 1.37876 * 119.99964 * 145.19328 * 9 7 6 12 12 N 1.31512 * 120.00148 * 5.77196 * 11 9 7 13 13 Si 1.86808 * 120.00118 * 186.05290 * 11 9 7 14 14 H 1.48492 * 109.47180 * 179.72246 * 13 11 9 15 15 H 1.48502 * 109.46523 * 299.71949 * 13 11 9 16 16 H 1.48499 * 109.47335 * 59.71504 * 13 11 9 17 17 C 1.50703 * 109.47730 * 150.00231 * 7 6 5 18 18 C 1.38238 * 119.99631 * 36.31865 * 17 7 6 19 19 C 1.38234 * 120.00007 * 179.79416 * 18 17 7 20 20 C 1.38238 * 119.99917 * 0.43960 * 19 18 17 21 21 C 1.38242 * 119.99903 * 359.81296 * 20 19 18 22 22 C 1.38230 * 119.99742 * 359.97438 * 21 20 19 23 23 C 1.39875 * 107.91972 * 359.60709 * 4 3 2 24 24 N 1.30842 * 108.19997 * 0.24305 * 23 4 3 25 25 H 1.09000 * 109.46937 * 270.31238 * 1 2 3 26 26 H 1.08999 * 109.46798 * 30.31036 * 1 2 3 27 27 H 1.08998 * 109.47321 * 150.30973 * 1 2 3 28 28 H 1.08003 * 126.12393 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47057 * 149.71248 * 5 4 3 30 30 H 1.08996 * 109.47525 * 29.71409 * 5 4 3 31 31 H 0.96997 * 120.00030 * 355.79711 * 12 11 9 32 32 H 1.08004 * 120.00316 * 0.02562 * 18 17 7 33 33 H 1.07999 * 120.00443 * 180.27650 * 19 18 17 34 34 H 1.07994 * 120.00364 * 179.83835 * 20 19 18 35 35 H 1.07992 * 119.99896 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.00095 * 179.97438 * 22 21 20 37 37 H 1.07993 * 125.89985 * 180.22463 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2591 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 8 5.1553 1.8166 -1.3557 7 6 6.3129 2.6462 -1.4722 8 1 6.9637 2.4847 -0.6129 9 6 5.8918 4.0925 -1.5185 10 1 4.9710 4.3714 -2.0091 11 6 6.6822 5.0596 -0.9345 12 7 7.8563 4.7374 -0.4374 13 14 6.0818 6.8262 -0.8423 14 1 7.1063 7.6625 -0.1671 15 1 5.8483 7.3418 -2.2153 16 1 4.8136 6.8785 -0.0716 17 6 7.0550 2.2985 -2.7369 18 6 6.3539 1.9474 -3.8754 19 6 7.0344 1.6325 -5.0367 20 6 8.4164 1.6599 -5.0570 21 6 9.1176 2.0060 -3.9170 22 6 8.4369 2.3251 -2.7570 23 6 3.5347 -0.7322 0.0037 24 7 2.2891 -1.1328 0.0057 25 1 -0.3633 0.0056 1.0277 26 1 -0.3633 0.8872 -0.5186 27 1 -0.3634 -0.8927 -0.5090 28 1 1.9282 2.1193 -0.0004 29 1 5.5821 1.0363 0.5091 30 1 4.5443 2.4824 0.5023 31 1 8.1404 3.8100 -0.4265 32 1 5.2742 1.9227 -3.8586 33 1 6.4866 1.3625 -5.9274 34 1 8.9482 1.4114 -5.9635 35 1 10.1972 2.0270 -3.9328 36 1 8.9848 2.5951 -1.8663 37 1 4.4054 -1.3711 0.0066 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222430907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:12 Heat of formation + Delta-G solvation = 37.831089 kcal Electronic energy + Delta-G solvation = -20122.500575 eV Core-core repulsion = 17058.864332 eV Total energy + Delta-G solvation = -3063.636243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15403 -40.19934 -38.29357 -35.28459 -34.21463 -32.54950 -31.66548 -31.46159 -28.65680 -27.86825 -25.82802 -24.85654 -23.24237 -22.06687 -22.02621 -21.28266 -19.17694 -17.99341 -17.69326 -17.13007 -16.30885 -16.17478 -15.97567 -15.61563 -15.38108 -15.15916 -15.03834 -14.45279 -14.10765 -13.90011 -13.78525 -13.50665 -13.44498 -13.33040 -12.87365 -12.64000 -12.27584 -11.97553 -11.90802 -11.67462 -11.50580 -11.35563 -10.62088 -10.39838 -10.13846 -9.69922 -9.50199 -9.35855 -8.62579 -6.39823 0.61926 0.65769 0.85743 1.52599 1.58800 1.61546 1.68972 1.79474 2.53259 2.99085 3.19357 3.34057 3.64486 3.94357 4.13034 4.22840 4.25644 4.33154 4.34019 4.43553 4.43996 4.51804 4.62834 4.67352 4.70215 4.84849 4.86310 5.00829 5.18033 5.25706 5.30868 5.58580 5.68520 5.73694 5.86054 5.96608 6.01923 6.06937 6.27151 6.52820 6.64048 6.72067 7.41220 8.70641 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.006025 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.327723 B = 4645.848803 C = 6079.746936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.377 5.377 3 C 0.079 3.921 4 C -0.256 4.256 5 C 0.153 3.847 6 O -0.400 6.400 7 C 0.233 3.767 8 H 0.009 0.991 9 C -0.612 4.612 10 H 0.045 0.955 11 C -0.017 4.017 12 N -0.922 5.922 13 Si 1.110 2.890 14 H -0.281 1.281 15 H -0.276 1.276 16 H -0.267 1.267 17 C -0.064 4.064 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.141 4.141 23 C 0.056 3.944 24 N -0.326 5.326 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.197 0.803 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -6.829 -2.111 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.159 5.159 3 C -0.068 4.068 4 C -0.267 4.267 5 C 0.076 3.924 6 O -0.320 6.320 7 C 0.176 3.824 8 H 0.027 0.973 9 C -0.649 4.649 10 H 0.064 0.936 11 C -0.217 4.217 12 N -0.559 5.559 13 Si 0.932 3.068 14 H -0.206 1.206 15 H -0.202 1.202 16 H -0.192 1.192 17 C -0.065 4.065 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.156 4.156 21 C -0.141 4.141 22 C -0.160 4.160 23 C -0.129 4.129 24 N -0.148 5.148 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.214 0.786 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.117 0.883 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.745 -6.419 -1.784 11.805 hybrid contribution 0.464 -0.618 0.059 0.775 sum -9.280 -7.038 -1.725 11.774 Atomic orbital electron populations 1.22245 0.71492 1.06030 1.04891 1.48833 1.08077 1.03012 1.56004 1.22701 0.90434 0.94495 0.99208 1.19953 0.94373 0.94088 1.18313 1.20247 0.92508 0.95485 0.84203 1.87760 1.47708 1.70221 1.26313 1.18639 0.83591 0.89298 0.90887 0.97332 1.22426 1.09813 0.93046 1.39618 0.93643 1.27179 0.93229 1.09083 0.92210 1.70944 1.18944 1.20668 1.45358 0.83023 0.75905 0.70488 0.77391 1.20642 1.20205 1.19180 1.20399 0.93889 0.94975 0.97205 1.20917 0.99527 1.00580 0.93108 1.21400 0.95154 1.00080 0.97583 1.21355 0.94060 1.01423 0.98750 1.21317 1.00587 0.99601 0.92621 1.20990 0.93698 1.02089 0.99218 1.24005 0.95669 0.94522 0.98723 1.77223 1.01820 1.09496 1.26279 0.89070 0.87050 0.88698 0.78575 0.94244 0.94219 0.92746 0.87642 0.83810 0.82928 0.84160 0.88325 0.78937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 11.47 127.77 1.47 2.87 16 2 N -0.38 -10.13 4.01 -369.55 -1.48 -11.61 16 3 C 0.08 2.36 11.40 83.54 0.95 3.31 16 4 C -0.26 -9.06 5.73 -20.15 -0.12 -9.17 16 5 C 0.15 6.38 6.22 71.23 0.44 6.82 16 6 O -0.40 -19.42 9.15 -148.98 -1.36 -20.78 16 7 C 0.23 12.18 2.19 29.10 0.06 12.24 16 8 H 0.01 0.50 5.99 -2.39 -0.01 0.48 16 9 C -0.61 -34.37 8.62 25.60 0.22 -34.15 16 10 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 11 C -0.02 -0.94 5.45 84.65 0.46 -0.48 16 12 N -0.92 -54.08 13.63 21.45 0.29 -53.78 16 13 Si 1.11 49.25 29.91 68.60 2.05 51.30 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 17 C -0.06 -3.12 4.98 -19.86 -0.10 -3.22 16 18 C -0.12 -5.39 9.35 22.27 0.21 -5.18 16 19 C -0.12 -4.37 10.05 22.27 0.22 -4.15 16 20 C -0.14 -4.46 10.05 22.27 0.22 -4.24 16 21 C -0.12 -4.50 10.05 22.27 0.22 -4.28 16 22 C -0.14 -6.41 9.54 22.27 0.21 -6.19 16 23 C 0.06 1.85 11.96 85.24 1.02 2.87 16 24 N -0.33 -10.41 12.58 -57.02 -0.72 -11.13 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.20 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.26 15.36 5.21 -92.71 -0.48 14.87 16 32 H 0.11 4.73 7.67 -2.91 -0.02 4.71 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 36 H 0.10 4.70 6.86 -2.91 -0.02 4.68 16 37 H 0.19 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -71.49 322.13 5.63 -65.87 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.34 Total: 23.08 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 5.50 Total: -42.94 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -1.91 Total: -76.52 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.36 Total: -20.78 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.05 Total: 51.30 kcal Total: -71.49 5.63 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222430907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.697 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds