Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35040 * 126.39850 * 2 1 4 4 N 1.30497 * 108.70035 * 180.26912 * 3 2 1 5 5 C 1.34124 * 109.25437 * 359.77086 * 4 3 2 6 6 C 1.34668 * 108.02431 * 359.97438 * 5 4 3 7 7 C 1.50694 * 126.59394 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47474 * 0.02929 * 7 6 5 9 9 C 1.42896 * 114.00342 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46904 * 330.00119 * 9 8 7 11 11 C 1.50694 * 109.46940 * 90.00012 * 9 8 7 12 12 H 1.08001 * 120.00442 * 59.85018 * 11 9 8 13 13 C 1.37881 * 120.00039 * 239.84317 * 11 9 8 14 14 N 1.31517 * 120.00018 * 184.69578 * 13 11 9 15 15 Si 1.86800 * 119.99858 * 4.97552 * 13 11 9 16 16 H 1.48501 * 109.46849 * 274.99578 * 15 13 11 17 17 H 1.48499 * 109.47306 * 35.00091 * 15 13 11 18 18 H 1.48503 * 109.46991 * 154.99602 * 15 13 11 19 19 C 1.50703 * 109.47015 * 209.99928 * 9 8 7 20 20 C 1.38229 * 120.00209 * 324.50095 * 19 9 8 21 21 C 1.38227 * 120.00053 * 179.78618 * 20 19 9 22 22 C 1.38235 * 120.00257 * 0.44107 * 21 20 19 23 23 C 1.38236 * 119.99706 * 359.81171 * 22 21 20 24 24 C 1.38232 * 120.00051 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46992 * 270.12193 * 1 2 3 26 26 H 1.08997 * 109.47232 * 30.11631 * 1 2 3 27 27 H 1.08994 * 109.47358 * 150.12169 * 1 2 3 28 28 H 1.08002 * 125.64940 * 0.06976 * 3 2 1 29 29 H 1.08003 * 125.99141 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47257 * 240.02786 * 7 6 5 31 31 H 1.09003 * 109.47548 * 120.02901 * 7 6 5 32 32 H 0.97001 * 119.99763 * 180.27483 * 14 13 11 33 33 H 1.08003 * 119.99966 * 359.97438 * 20 19 9 34 34 H 1.08001 * 120.00525 * 180.27212 * 21 20 19 35 35 H 1.08004 * 120.00302 * 179.83032 * 22 21 20 36 36 H 1.07995 * 120.00104 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.00369 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0046 6 6 2.2772 -1.1018 0.0028 7 6 1.8363 -2.5428 0.0061 8 8 2.9853 -3.3926 0.0009 9 6 2.6764 -4.7878 0.0041 10 1 1.7317 -4.9495 0.5232 11 6 2.5602 -5.2798 -1.4155 12 1 3.4030 -5.1987 -2.0859 13 6 1.3778 -5.8336 -1.8586 14 7 1.3043 -6.3468 -3.0673 15 14 -0.1219 -5.8481 -0.7449 16 1 -0.0653 -7.0348 0.1460 17 1 -0.1396 -4.6119 0.0776 18 1 -1.3529 -5.9092 -1.5732 19 6 3.7730 -5.5434 0.7095 20 6 5.0862 -5.1293 0.5882 21 6 6.0915 -5.8198 1.2388 22 6 5.7847 -6.9299 2.0033 23 6 4.4720 -7.3471 2.1204 24 6 3.4662 -6.6540 1.4734 25 1 -0.3633 0.0022 1.0277 26 1 -0.3633 0.8889 -0.5156 27 1 -0.3634 -0.8910 -0.5119 28 1 1.9335 2.1144 0.0011 29 1 4.4368 -1.2612 -0.0081 30 1 1.2341 -2.7406 -0.8806 31 1 1.2432 -2.7393 0.8993 32 1 0.4713 -6.7328 -3.3804 33 1 5.3264 -4.2645 -0.0124 34 1 7.1171 -5.4937 1.1476 35 1 6.5706 -7.4710 2.5094 36 1 4.2324 -8.2146 2.7173 37 1 2.4406 -6.9802 1.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222594102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = 46.285499 kcal Electronic energy + Delta-G solvation = -20413.405705 eV Core-core repulsion = 17350.136073 eV Total energy + Delta-G solvation = -3063.269633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77469 -38.70414 -36.79454 -33.84318 -32.97452 -31.46544 -30.25456 -29.83321 -27.17284 -26.85688 -25.32567 -22.87577 -21.86865 -21.10921 -20.09883 -19.74342 -17.36820 -16.91368 -16.21499 -15.74821 -15.67150 -14.88964 -14.51910 -14.06900 -13.90692 -13.80712 -13.32935 -13.17801 -12.83722 -12.76321 -12.69968 -12.57457 -12.27198 -11.93345 -11.64486 -11.14311 -10.99038 -10.66273 -10.40820 -9.94398 -9.71424 -9.47921 -9.35283 -8.89970 -8.68114 -8.25517 -7.95859 -7.83726 -6.33865 -4.36524 2.05546 2.09594 2.29263 2.87902 3.02911 3.08885 3.14211 3.50021 4.12410 4.32746 4.56136 4.73912 4.89566 5.04453 5.07091 5.24643 5.33514 5.50257 5.54994 5.67605 5.68694 5.81825 5.94314 6.06291 6.14637 6.20961 6.26852 6.40339 6.61820 6.67340 6.76870 7.08482 7.10358 7.19312 7.31191 7.39788 7.43027 7.69358 8.05057 8.30869 8.40018 8.81093 9.26226 10.78542 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.007067 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.770669 B = 3961.169956 C = 5364.730149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.167 3.833 4 N -0.498 5.498 5 C -0.004 4.004 6 C -0.017 4.017 7 C 0.152 3.848 8 O -0.382 6.382 9 C 0.214 3.786 10 H 0.033 0.967 11 C -0.520 4.520 12 H 0.084 0.916 13 C 0.079 3.921 14 N -0.879 5.879 15 Si 0.865 3.135 16 H -0.269 1.269 17 H -0.266 1.266 18 H -0.282 1.282 19 C -0.033 4.033 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.124 4.124 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.202 0.798 29 H 0.175 0.825 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.268 0.732 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 7.187 8.793 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.148 5.148 3 C -0.114 4.114 4 N -0.217 5.217 5 C -0.151 4.151 6 C -0.130 4.130 7 C 0.073 3.927 8 O -0.302 6.302 9 C 0.159 3.841 10 H 0.051 0.949 11 C -0.557 4.557 12 H 0.102 0.898 13 C -0.126 4.126 14 N -0.516 5.516 15 Si 0.692 3.308 16 H -0.195 1.195 17 H -0.191 1.191 18 H -0.208 1.208 19 C -0.034 4.034 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.142 4.142 24 C -0.143 4.143 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.218 0.782 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.423 7.657 8.635 11.628 hybrid contribution -2.010 -0.793 0.326 2.185 sum -3.432 6.864 8.961 11.798 Atomic orbital electron populations 1.22028 0.77058 1.04732 1.03381 1.45126 1.07323 1.06556 1.55757 1.24809 0.85883 0.93034 1.07689 1.70261 1.19267 1.12509 1.19617 1.22065 0.96419 0.90017 1.06616 1.21131 0.91645 0.89549 1.10696 1.20091 0.89507 0.83478 0.99581 1.87786 1.29285 1.17888 1.95220 1.19135 0.91377 0.78024 0.95577 0.94899 1.21301 1.00452 1.39360 0.94600 0.89787 1.25128 0.98331 0.94150 0.94951 1.69885 1.27178 1.37313 1.17195 0.87070 0.83257 0.79339 0.81137 1.19452 1.19092 1.20799 1.20080 0.95360 0.95124 0.92839 1.20960 0.92127 0.99785 0.98882 1.21069 0.98746 0.96207 0.98362 1.20906 0.96089 0.98064 1.01247 1.20918 0.93127 0.99639 1.00494 1.20853 0.99018 0.96274 0.98118 0.90709 0.89477 0.89584 0.78181 0.80822 0.92145 0.93927 0.92128 0.85809 0.86938 0.87184 0.86999 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.01 59.85 0.66 1.35 16 2 N -0.46 -6.66 3.15 -121.37 -0.38 -7.04 16 3 C 0.17 2.36 12.56 -90.38 -1.14 1.22 16 4 N -0.50 -8.83 11.25 -14.67 -0.17 -8.99 16 5 C 0.00 -0.08 11.22 -17.81 -0.20 -0.28 16 6 C -0.02 -0.30 6.93 -81.60 -0.57 -0.86 16 7 C 0.15 2.95 5.68 36.00 0.20 3.16 16 8 O -0.38 -8.40 8.47 -35.23 -0.30 -8.70 16 9 C 0.21 4.96 2.29 -29.04 -0.07 4.89 16 10 H 0.03 0.75 4.23 -51.93 -0.22 0.53 16 11 C -0.52 -14.03 9.17 -34.44 -0.32 -14.35 16 12 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 15 Si 0.87 19.56 27.02 -169.99 -4.59 14.97 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.03 -0.72 4.98 -104.62 -0.52 -1.24 16 20 C -0.10 -1.98 9.35 -39.59 -0.37 -2.35 16 21 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 22 C -0.14 -2.34 10.05 -39.58 -0.40 -2.74 16 23 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.12 -2.45 9.68 -39.58 -0.38 -2.83 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.88 7.89 -51.93 -0.41 0.47 16 28 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.17 3.25 7.87 -52.48 -0.41 2.83 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.12 2.47 7.64 -52.48 -0.40 2.07 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -31.70 319.87 -8.67 -40.36 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.84 Total: 6.32 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -3.98 Total: -17.05 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.23 Total: -40.71 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.30 Total: -8.70 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.59 Total: 14.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.70 -8.67 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.650 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds