Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35040 * 126.39850 * 2 1 4 4 N 1.30497 * 108.70035 * 180.26912 * 3 2 1 5 5 C 1.34124 * 109.25437 * 359.77086 * 4 3 2 6 6 C 1.34668 * 108.02431 * 359.97438 * 5 4 3 7 7 C 1.50694 * 126.59394 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47474 * 0.02929 * 7 6 5 9 9 C 1.42896 * 114.00342 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46904 * 330.00119 * 9 8 7 11 11 C 1.50694 * 109.46940 * 90.00012 * 9 8 7 12 12 H 1.08001 * 120.00442 * 59.85018 * 11 9 8 13 13 C 1.37881 * 120.00039 * 239.84317 * 11 9 8 14 14 N 1.31517 * 120.00018 * 184.69578 * 13 11 9 15 15 Si 1.86800 * 119.99858 * 4.97552 * 13 11 9 16 16 H 1.48501 * 109.46849 * 274.99578 * 15 13 11 17 17 H 1.48499 * 109.47306 * 35.00091 * 15 13 11 18 18 H 1.48503 * 109.46991 * 154.99602 * 15 13 11 19 19 C 1.50703 * 109.47015 * 209.99928 * 9 8 7 20 20 C 1.38229 * 120.00209 * 324.50095 * 19 9 8 21 21 C 1.38227 * 120.00053 * 179.78618 * 20 19 9 22 22 C 1.38235 * 120.00257 * 0.44107 * 21 20 19 23 23 C 1.38236 * 119.99706 * 359.81171 * 22 21 20 24 24 C 1.38232 * 120.00051 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46992 * 270.12193 * 1 2 3 26 26 H 1.08997 * 109.47232 * 30.11631 * 1 2 3 27 27 H 1.08994 * 109.47358 * 150.12169 * 1 2 3 28 28 H 1.08002 * 125.64940 * 0.06976 * 3 2 1 29 29 H 1.08003 * 125.99141 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47257 * 240.02786 * 7 6 5 31 31 H 1.09003 * 109.47548 * 120.02901 * 7 6 5 32 32 H 0.97001 * 119.99763 * 180.27483 * 14 13 11 33 33 H 1.08003 * 119.99966 * 359.97438 * 20 19 9 34 34 H 1.08001 * 120.00525 * 180.27212 * 21 20 19 35 35 H 1.08004 * 120.00302 * 179.83032 * 22 21 20 36 36 H 1.07995 * 120.00104 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.00369 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0046 6 6 2.2772 -1.1018 0.0028 7 6 1.8363 -2.5428 0.0061 8 8 2.9853 -3.3926 0.0009 9 6 2.6764 -4.7878 0.0041 10 1 1.7317 -4.9495 0.5232 11 6 2.5602 -5.2798 -1.4155 12 1 3.4030 -5.1987 -2.0859 13 6 1.3778 -5.8336 -1.8586 14 7 1.3043 -6.3468 -3.0673 15 14 -0.1219 -5.8481 -0.7449 16 1 -0.0653 -7.0348 0.1460 17 1 -0.1396 -4.6119 0.0776 18 1 -1.3529 -5.9092 -1.5732 19 6 3.7730 -5.5434 0.7095 20 6 5.0862 -5.1293 0.5882 21 6 6.0915 -5.8198 1.2388 22 6 5.7847 -6.9299 2.0033 23 6 4.4720 -7.3471 2.1204 24 6 3.4662 -6.6540 1.4734 25 1 -0.3633 0.0022 1.0277 26 1 -0.3633 0.8889 -0.5156 27 1 -0.3634 -0.8910 -0.5119 28 1 1.9335 2.1144 0.0011 29 1 4.4368 -1.2612 -0.0081 30 1 1.2341 -2.7406 -0.8806 31 1 1.2432 -2.7393 0.8993 32 1 0.4713 -6.7328 -3.3804 33 1 5.3264 -4.2645 -0.0124 34 1 7.1171 -5.4937 1.1476 35 1 6.5706 -7.4710 2.5094 36 1 4.2324 -8.2146 2.7173 37 1 2.4406 -6.9802 1.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222594102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = 27.925803 kcal Electronic energy + Delta-G solvation = -20414.201842 eV Core-core repulsion = 17350.136073 eV Total energy + Delta-G solvation = -3064.065769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00744 -40.22156 -38.43080 -35.00013 -34.89345 -33.09997 -31.67704 -31.23272 -28.99576 -27.80579 -26.81560 -24.62732 -23.30087 -22.35682 -21.67410 -21.01575 -19.33316 -18.20023 -17.58879 -17.39324 -16.99671 -16.44799 -16.08205 -15.48149 -15.31581 -15.20414 -14.86786 -14.60517 -14.39238 -14.11232 -13.94411 -13.71316 -13.62932 -13.34846 -13.21541 -12.91798 -12.61429 -12.19210 -11.91078 -11.82919 -11.29744 -10.97177 -10.89202 -10.57410 -10.35526 -9.68356 -9.41900 -9.28958 -8.42288 -6.52153 0.61251 0.65546 1.04811 1.22892 1.26563 1.35321 1.76464 2.18916 2.20294 2.75555 3.09569 3.12603 3.75044 3.91853 4.00899 4.10132 4.20642 4.25221 4.29890 4.36891 4.38841 4.46315 4.47407 4.60921 4.67555 4.85366 4.87034 4.91505 5.21985 5.27119 5.32369 5.37850 5.69693 5.71422 5.74200 5.88482 6.06798 6.26989 6.33991 6.48377 6.64241 7.09974 7.17100 8.74580 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.007067 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.770669 B = 3961.169956 C = 5364.730149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.458 5.458 3 C 0.191 3.809 4 N -0.536 5.536 5 C -0.027 4.027 6 C -0.036 4.036 7 C 0.153 3.847 8 O -0.393 6.393 9 C 0.224 3.776 10 H 0.040 0.960 11 C -0.529 4.529 12 H 0.028 0.972 13 C 0.024 3.976 14 N -0.932 5.932 15 Si 0.929 3.071 16 H -0.255 1.255 17 H -0.239 1.239 18 H -0.277 1.277 19 C -0.070 4.070 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.142 4.142 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.254 0.746 29 H 0.156 0.844 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.272 0.728 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 7.775 11.606 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.143 5.143 3 C -0.091 4.091 4 N -0.255 5.255 5 C -0.174 4.174 6 C -0.151 4.151 7 C 0.075 3.925 8 O -0.312 6.312 9 C 0.168 3.832 10 H 0.058 0.942 11 C -0.567 4.567 12 H 0.046 0.954 13 C -0.176 4.176 14 N -0.571 5.571 15 Si 0.751 3.249 16 H -0.179 1.179 17 H -0.163 1.163 18 H -0.202 1.202 19 C -0.070 4.070 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.160 4.160 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.269 0.731 29 H 0.174 0.826 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.624 8.254 11.462 14.367 hybrid contribution -1.512 -0.899 -0.565 1.848 sum -4.136 7.355 10.897 13.783 Atomic orbital electron populations 1.22426 0.74023 1.06219 1.05284 1.45370 1.09088 1.05254 1.54591 1.25806 0.84760 0.94704 1.03815 1.70222 1.21733 1.11693 1.21805 1.21967 0.96492 0.90956 1.07946 1.20864 0.92153 0.89724 1.12339 1.20125 0.88686 0.84229 0.99477 1.87765 1.30639 1.17681 1.95160 1.18927 0.92638 0.78366 0.93259 0.94231 1.21381 0.99012 1.40007 0.96279 0.95406 1.26019 1.01718 0.93326 0.96511 1.70047 1.28331 1.39094 1.19652 0.86034 0.78451 0.80961 0.79452 1.17940 1.16280 1.20200 1.20131 0.95451 0.96477 0.94970 1.20987 0.92762 1.00279 1.00007 1.21410 0.99335 0.96141 0.97417 1.21414 0.96945 0.97077 0.99779 1.21355 0.92801 0.99996 0.99579 1.21056 1.00237 0.96061 0.98621 0.88562 0.85775 0.90429 0.73063 0.82641 0.93737 0.92307 0.91925 0.87620 0.84113 0.82971 0.83359 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 11.01 127.77 1.41 2.40 16 2 N -0.46 -12.31 3.15 -537.90 -1.70 -14.01 16 3 C 0.19 4.91 12.56 180.26 2.26 7.17 16 4 N -0.54 -18.79 11.25 -200.31 -2.25 -21.04 16 5 C -0.03 -1.04 11.22 83.52 0.94 -0.10 16 6 C -0.04 -1.30 6.93 40.95 0.28 -1.02 16 7 C 0.15 6.06 5.68 71.23 0.40 6.47 16 8 O -0.39 -18.21 8.47 -148.98 -1.26 -19.47 16 9 C 0.22 10.76 2.29 29.10 0.07 10.83 16 10 H 0.04 1.81 4.23 -2.39 -0.01 1.80 16 11 C -0.53 -30.43 9.17 25.60 0.23 -30.19 16 12 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 13 C 0.02 1.35 5.47 84.66 0.46 1.81 16 14 N -0.93 -56.69 13.96 21.45 0.30 -56.39 16 15 Si 0.93 40.48 27.02 68.60 1.85 42.33 16 16 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.24 -9.26 6.52 99.48 0.65 -8.61 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.07 -3.10 4.98 -19.87 -0.10 -3.19 16 20 C -0.12 -5.05 9.35 22.26 0.21 -4.85 16 21 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 22 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.14 -5.47 9.68 22.27 0.22 -5.25 16 25 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.43 7.89 -2.39 -0.02 1.41 16 28 H 0.25 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.16 6.37 7.87 -2.91 -0.02 6.34 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.11 4.60 7.64 -2.91 -0.02 4.58 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -75.36 319.87 5.00 -70.37 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 1.00 Total: 25.20 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 7.06 Total: -26.99 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -3.65 Total: -91.44 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -1.26 Total: -19.47 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.85 Total: 42.33 kcal Total: -75.36 5.00 -70.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.292 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds