Wall clock time and date at job start Mon Mar 30 2020 01:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35036 * 126.39684 * 2 1 4 4 N 1.30507 * 108.69845 * 180.02562 * 3 2 1 5 5 C 1.34125 * 109.25509 * 359.97438 * 4 3 2 6 6 C 1.34665 * 108.02192 * 359.73522 * 5 4 3 7 7 C 1.50700 * 126.59153 * 180.28179 * 6 5 4 8 8 O 1.42897 * 109.47507 * 0.16517 * 7 6 5 9 9 C 1.42902 * 114.00115 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47090 * 30.00023 * 9 8 7 11 11 C 1.50704 * 109.46570 * 269.99754 * 9 8 7 12 12 H 1.07998 * 120.00189 * 305.05814 * 11 9 8 13 13 C 1.37880 * 119.99551 * 125.06325 * 11 9 8 14 14 N 1.31513 * 120.00018 * 173.07058 * 13 11 9 15 15 Si 1.86799 * 119.99914 * 353.06815 * 13 11 9 16 16 H 1.48494 * 109.47211 * 85.12300 * 15 13 11 17 17 H 1.48506 * 109.46735 * 205.11708 * 15 13 11 18 18 H 1.48494 * 109.47478 * 325.11785 * 15 13 11 19 19 C 1.50695 * 109.46849 * 150.00109 * 9 8 7 20 20 C 1.38237 * 120.00372 * 35.38499 * 19 9 8 21 21 C 1.38234 * 120.00211 * 179.78590 * 20 19 9 22 22 C 1.38237 * 119.99695 * 0.44289 * 21 20 19 23 23 C 1.38236 * 120.00041 * 359.81064 * 22 21 20 24 24 C 1.38227 * 119.99943 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46913 * 90.02576 * 1 2 3 26 26 H 1.09003 * 109.47120 * 330.02880 * 1 2 3 27 27 H 1.09004 * 109.47517 * 210.02540 * 1 2 3 28 28 H 1.08001 * 125.65440 * 359.96587 * 3 2 1 29 29 H 1.07998 * 125.98802 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.47096 * 120.17098 * 7 6 5 31 31 H 1.09006 * 109.46752 * 240.16125 * 7 6 5 32 32 H 0.96991 * 120.00392 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99968 * 0.02562 * 20 19 9 34 34 H 1.08000 * 120.00112 * 180.27431 * 21 20 19 35 35 H 1.08004 * 120.00038 * 179.83086 * 22 21 20 36 36 H 1.08006 * 119.99809 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.99882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5460 -0.6506 -0.0004 6 6 2.2772 -1.1018 0.0063 7 6 1.8363 -2.5429 0.0149 8 8 2.9852 -3.3926 0.0190 9 6 2.6763 -4.7878 0.0266 10 1 1.7286 -4.9529 -0.4859 11 6 2.5684 -5.2704 1.4502 12 1 3.3868 -5.1134 2.1372 13 6 1.4248 -5.9126 1.8755 14 7 1.3814 -6.4538 3.0734 15 14 -0.0629 -6.0138 0.7504 16 1 0.0810 -7.1808 -0.1566 17 1 -1.2923 -6.1714 1.5684 18 1 -0.1601 -4.7700 -0.0549 19 6 3.7687 -5.5480 -0.6801 20 6 5.0824 -5.1318 -0.5711 21 6 6.0851 -5.8317 -1.2158 22 6 5.7729 -6.9426 -1.9771 23 6 4.4586 -7.3558 -2.0903 24 6 3.4566 -6.6584 -1.4420 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8903 0.5134 27 1 -0.3634 -0.8898 0.5142 28 1 1.9335 2.1144 -0.0005 29 1 4.4368 -1.2612 -0.0003 30 1 1.2392 -2.7348 0.9064 31 1 1.2380 -2.7450 -0.8736 32 1 0.5768 -6.9052 3.3728 33 1 5.3259 -4.2620 0.0210 34 1 7.1119 -5.5091 -1.1270 35 1 6.5559 -7.4879 -2.4830 36 1 4.2147 -8.2234 -2.6854 37 1 2.4298 -6.9814 -1.5302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222594113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:23 Heat of formation + Delta-G solvation = 46.227765 kcal Electronic energy + Delta-G solvation = -20401.071371 eV Core-core repulsion = 17337.799235 eV Total energy + Delta-G solvation = -3063.272136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78042 -38.69899 -36.79641 -33.84886 -32.98749 -31.45618 -30.24867 -29.83547 -27.17193 -26.86133 -25.32498 -22.86826 -21.86501 -21.11486 -20.10196 -19.74510 -17.35697 -16.93119 -16.20511 -15.75237 -15.68349 -14.88473 -14.52011 -14.06717 -13.91196 -13.80637 -13.32434 -13.18202 -12.83675 -12.76483 -12.69037 -12.58143 -12.27862 -11.94092 -11.63821 -11.14206 -10.98707 -10.66249 -10.40006 -9.93671 -9.72797 -9.49650 -9.36141 -8.90031 -8.67452 -8.24806 -7.96108 -7.83703 -6.33783 -4.35805 2.06297 2.10407 2.28632 2.87336 3.03851 3.09393 3.14725 3.49408 4.12998 4.32864 4.56411 4.73389 4.89101 5.03758 5.06680 5.23843 5.32985 5.50861 5.55527 5.66796 5.69144 5.81129 5.94195 6.05651 6.14792 6.20807 6.27351 6.41238 6.61510 6.68186 6.77200 7.07933 7.11030 7.20100 7.31167 7.40124 7.42609 7.70253 8.03011 8.30810 8.39523 8.81584 9.26709 10.78656 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.006990 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.631900 B = 4004.721105 C = 5389.068948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.167 3.833 4 N -0.498 5.498 5 C -0.004 4.004 6 C -0.017 4.017 7 C 0.152 3.848 8 O -0.382 6.382 9 C 0.215 3.785 10 H 0.033 0.967 11 C -0.521 4.521 12 H 0.084 0.916 13 C 0.079 3.921 14 N -0.879 5.879 15 Si 0.865 3.135 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.033 4.033 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.202 0.798 29 H 0.175 0.825 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 7.346 -8.762 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.148 5.148 3 C -0.114 4.114 4 N -0.217 5.217 5 C -0.151 4.151 6 C -0.130 4.130 7 C 0.073 3.927 8 O -0.301 6.301 9 C 0.159 3.841 10 H 0.051 0.949 11 C -0.558 4.558 12 H 0.103 0.897 13 C -0.125 4.125 14 N -0.515 5.515 15 Si 0.692 3.308 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.034 4.034 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.141 4.141 24 C -0.144 4.144 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.218 0.782 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.571 7.803 -8.616 11.730 hybrid contribution -1.996 -0.850 -0.328 2.194 sum -3.567 6.953 -8.944 11.877 Atomic orbital electron populations 1.22032 0.77045 1.04733 1.03391 1.45124 1.07329 1.06550 1.55757 1.24813 0.85882 0.93037 1.07672 1.70265 1.19266 1.12508 1.19618 1.22066 0.96419 0.90024 1.06613 1.21120 0.91642 0.89543 1.10716 1.20085 0.89455 0.83470 0.99655 1.87770 1.29251 1.17831 1.95230 1.19144 0.91412 0.77924 0.95602 0.94905 1.21302 1.03581 1.36940 0.94013 0.89748 1.25108 0.98195 0.94240 0.94971 1.69886 1.28762 1.34598 1.18264 0.87059 0.83286 0.79274 0.81221 1.19431 1.20787 1.19152 1.20105 0.95433 0.95163 0.92695 1.20954 0.92145 0.99730 0.98930 1.21069 0.98737 0.96144 0.98402 1.20902 0.96053 0.98112 1.01276 1.20915 0.93144 0.99597 1.00485 1.20848 0.99006 0.96358 0.98153 0.90692 0.89492 0.89568 0.78177 0.80824 0.92067 0.93917 0.92125 0.85829 0.86943 0.87191 0.87014 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 11.01 59.85 0.66 1.34 16 2 N -0.46 -6.60 3.15 -121.36 -0.38 -6.98 16 3 C 0.17 2.35 12.56 -90.38 -1.14 1.21 16 4 N -0.50 -8.79 11.25 -14.67 -0.17 -8.95 16 5 C 0.00 -0.08 11.22 -17.82 -0.20 -0.28 16 6 C -0.02 -0.29 6.93 -81.60 -0.57 -0.86 16 7 C 0.15 2.92 5.85 36.01 0.21 3.14 16 8 O -0.38 -8.35 8.46 -35.23 -0.30 -8.65 16 9 C 0.21 4.97 2.30 -29.04 -0.07 4.90 16 10 H 0.03 0.75 4.23 -51.93 -0.22 0.53 16 11 C -0.52 -14.07 9.17 -34.44 -0.32 -14.39 16 12 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 14 N -0.88 -25.46 13.96 55.43 0.77 -24.68 16 15 Si 0.86 19.62 27.04 -169.99 -4.60 15.03 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -5.59 6.66 56.52 0.38 -5.22 16 19 C -0.03 -0.72 4.98 -104.63 -0.52 -1.24 16 20 C -0.10 -1.99 9.35 -39.58 -0.37 -2.36 16 21 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.12 -2.11 10.05 -39.59 -0.40 -2.51 16 24 C -0.13 -2.49 9.68 -39.59 -0.38 -2.87 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 28 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.17 3.23 7.87 -52.49 -0.41 2.82 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.12 2.47 7.64 -52.49 -0.40 2.07 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -31.72 320.19 -8.65 -40.38 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.83 Total: 6.23 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.98 Total: -17.19 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.23 Total: -40.62 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.30 Total: -8.65 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.60 Total: 15.03 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.72 -8.65 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.603 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds