Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35036 * 126.39684 * 2 1 4 4 N 1.30507 * 108.69845 * 180.02562 * 3 2 1 5 5 C 1.34125 * 109.25509 * 359.97438 * 4 3 2 6 6 C 1.34665 * 108.02192 * 359.73522 * 5 4 3 7 7 C 1.50700 * 126.59153 * 180.28179 * 6 5 4 8 8 O 1.42897 * 109.47507 * 0.16517 * 7 6 5 9 9 C 1.42902 * 114.00115 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47090 * 30.00023 * 9 8 7 11 11 C 1.50704 * 109.46570 * 269.99754 * 9 8 7 12 12 H 1.07998 * 120.00189 * 305.05814 * 11 9 8 13 13 C 1.37880 * 119.99551 * 125.06325 * 11 9 8 14 14 N 1.31513 * 120.00018 * 173.07058 * 13 11 9 15 15 Si 1.86799 * 119.99914 * 353.06815 * 13 11 9 16 16 H 1.48494 * 109.47211 * 85.12300 * 15 13 11 17 17 H 1.48506 * 109.46735 * 205.11708 * 15 13 11 18 18 H 1.48494 * 109.47478 * 325.11785 * 15 13 11 19 19 C 1.50695 * 109.46849 * 150.00109 * 9 8 7 20 20 C 1.38237 * 120.00372 * 35.38499 * 19 9 8 21 21 C 1.38234 * 120.00211 * 179.78590 * 20 19 9 22 22 C 1.38237 * 119.99695 * 0.44289 * 21 20 19 23 23 C 1.38236 * 120.00041 * 359.81064 * 22 21 20 24 24 C 1.38227 * 119.99943 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46913 * 90.02576 * 1 2 3 26 26 H 1.09003 * 109.47120 * 330.02880 * 1 2 3 27 27 H 1.09004 * 109.47517 * 210.02540 * 1 2 3 28 28 H 1.08001 * 125.65440 * 359.96587 * 3 2 1 29 29 H 1.07998 * 125.98802 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.47096 * 120.17098 * 7 6 5 31 31 H 1.09006 * 109.46752 * 240.16125 * 7 6 5 32 32 H 0.96991 * 120.00392 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99968 * 0.02562 * 20 19 9 34 34 H 1.08000 * 120.00112 * 180.27431 * 21 20 19 35 35 H 1.08004 * 120.00038 * 179.83086 * 22 21 20 36 36 H 1.08006 * 119.99809 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.99882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5460 -0.6506 -0.0004 6 6 2.2772 -1.1018 0.0063 7 6 1.8363 -2.5429 0.0149 8 8 2.9852 -3.3926 0.0190 9 6 2.6763 -4.7878 0.0266 10 1 1.7286 -4.9529 -0.4859 11 6 2.5684 -5.2704 1.4502 12 1 3.3868 -5.1134 2.1372 13 6 1.4248 -5.9126 1.8755 14 7 1.3814 -6.4538 3.0734 15 14 -0.0629 -6.0138 0.7504 16 1 0.0810 -7.1808 -0.1566 17 1 -1.2923 -6.1714 1.5684 18 1 -0.1601 -4.7700 -0.0549 19 6 3.7687 -5.5480 -0.6801 20 6 5.0824 -5.1318 -0.5711 21 6 6.0851 -5.8317 -1.2158 22 6 5.7729 -6.9426 -1.9771 23 6 4.4586 -7.3558 -2.0903 24 6 3.4566 -6.6584 -1.4420 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8903 0.5134 27 1 -0.3634 -0.8898 0.5142 28 1 1.9335 2.1144 -0.0005 29 1 4.4368 -1.2612 -0.0003 30 1 1.2392 -2.7348 0.9064 31 1 1.2380 -2.7450 -0.8736 32 1 0.5768 -6.9052 3.3728 33 1 5.3259 -4.2620 0.0210 34 1 7.1119 -5.5091 -1.1270 35 1 6.5559 -7.4879 -2.4830 36 1 4.2147 -8.2234 -2.6854 37 1 2.4298 -6.9814 -1.5302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222594113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = 27.878442 kcal Electronic energy + Delta-G solvation = -20401.867057 eV Core-core repulsion = 17337.799235 eV Total energy + Delta-G solvation = -3064.067823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00558 -40.22169 -38.42874 -35.00534 -34.89763 -33.09365 -31.67787 -31.23209 -28.99535 -27.80168 -26.80713 -24.62277 -23.30461 -22.35733 -21.67942 -21.00861 -19.32929 -18.20167 -17.58373 -17.40720 -16.99077 -16.44333 -16.08408 -15.47933 -15.31221 -15.20113 -14.87296 -14.59528 -14.39497 -14.11615 -13.95092 -13.71467 -13.62682 -13.34934 -13.21387 -12.91699 -12.60603 -12.19412 -11.91343 -11.83173 -11.31577 -10.95952 -10.89781 -10.57347 -10.35625 -9.68430 -9.41830 -9.28858 -8.42337 -6.51396 0.61250 0.65601 1.05001 1.23343 1.26587 1.35452 1.76591 2.19001 2.20493 2.76611 3.07805 3.12394 3.75116 3.92078 4.01199 4.09993 4.21012 4.24918 4.29585 4.37454 4.38699 4.46250 4.48018 4.61560 4.68018 4.85374 4.87416 4.91473 5.21669 5.27164 5.32125 5.38479 5.69646 5.71551 5.74191 5.88429 6.05814 6.26916 6.34110 6.47832 6.64661 7.10088 7.17576 8.74595 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.006990 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.631900 B = 4004.721105 C = 5389.068948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.458 5.458 3 C 0.191 3.809 4 N -0.536 5.536 5 C -0.027 4.027 6 C -0.035 4.035 7 C 0.153 3.847 8 O -0.392 6.392 9 C 0.224 3.776 10 H 0.040 0.960 11 C -0.530 4.530 12 H 0.028 0.972 13 C 0.025 3.975 14 N -0.932 5.932 15 Si 0.928 3.072 16 H -0.254 1.254 17 H -0.276 1.276 18 H -0.240 1.240 19 C -0.069 4.069 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.143 4.143 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.253 0.747 29 H 0.156 0.844 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.272 0.728 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 7.858 -11.567 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.143 5.143 3 C -0.091 4.091 4 N -0.255 5.255 5 C -0.174 4.174 6 C -0.150 4.150 7 C 0.075 3.925 8 O -0.312 6.312 9 C 0.168 3.832 10 H 0.057 0.943 11 C -0.568 4.568 12 H 0.046 0.954 13 C -0.175 4.175 14 N -0.571 5.571 15 Si 0.750 3.250 16 H -0.179 1.179 17 H -0.202 1.202 18 H -0.164 1.164 19 C -0.070 4.070 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.137 4.137 24 C -0.161 4.161 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.269 0.731 29 H 0.173 0.827 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.771 8.327 -11.435 14.415 hybrid contribution -1.502 -0.926 0.559 1.851 sum -4.273 7.401 -10.876 13.832 Atomic orbital electron populations 1.22429 0.73999 1.06243 1.05277 1.45369 1.09097 1.05241 1.54580 1.25805 0.84763 0.94709 1.03827 1.70225 1.21738 1.11705 1.21809 1.21966 0.96500 0.90956 1.07977 1.20854 0.92136 0.89723 1.12310 1.20124 0.88640 0.84200 0.99585 1.87751 1.30645 1.17601 1.95165 1.18932 0.92625 0.78330 0.93266 0.94256 1.21378 1.02235 1.37515 0.95637 0.95354 1.25989 1.01462 0.93458 0.96594 1.70045 1.29969 1.36299 1.20742 0.86031 0.78609 0.80853 0.79483 1.17876 1.20194 1.16408 1.20155 0.95549 0.96474 0.94822 1.20986 0.92760 1.00219 1.00061 1.21415 0.99354 0.96062 0.97440 1.21410 0.96886 0.97146 0.99809 1.21353 0.92845 0.99956 0.99577 1.21046 1.00183 0.96181 0.98690 0.88570 0.85808 0.90363 0.73078 0.82653 0.93609 0.92263 0.91919 0.87594 0.84098 0.82974 0.83390 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 11.01 127.77 1.41 2.38 16 2 N -0.46 -12.21 3.15 -537.87 -1.70 -13.91 16 3 C 0.19 4.88 12.56 180.26 2.26 7.14 16 4 N -0.54 -18.74 11.25 -200.32 -2.25 -21.00 16 5 C -0.03 -1.05 11.22 83.52 0.94 -0.11 16 6 C -0.04 -1.27 6.93 40.95 0.28 -0.99 16 7 C 0.15 6.01 5.85 71.24 0.42 6.43 16 8 O -0.39 -18.11 8.46 -148.98 -1.26 -19.38 16 9 C 0.22 10.79 2.30 29.10 0.07 10.85 16 10 H 0.04 1.80 4.23 -2.39 -0.01 1.79 16 11 C -0.53 -30.47 9.17 25.60 0.23 -30.23 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 13 C 0.02 1.39 5.47 84.66 0.46 1.86 16 14 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16 15 Si 0.93 40.57 27.04 68.60 1.86 42.42 16 16 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.24 -9.38 6.66 99.48 0.66 -8.71 16 19 C -0.07 -3.09 4.98 -19.87 -0.10 -3.19 16 20 C -0.12 -5.06 9.35 22.27 0.21 -4.85 16 21 C -0.12 -4.14 10.05 22.27 0.22 -3.91 16 22 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 24 C -0.14 -5.55 9.68 22.27 0.22 -5.34 16 25 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.41 7.88 -2.39 -0.02 1.39 16 28 H 0.25 3.46 8.06 -2.91 -0.02 3.43 16 29 H 0.16 6.34 7.87 -2.91 -0.02 6.32 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 2.10 8.09 -2.38 -0.02 2.08 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.11 4.61 7.64 -2.91 -0.02 4.59 16 34 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 35 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -75.31 320.19 5.03 -70.28 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.01 Total: 25.12 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 7.07 Total: -27.18 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.65 Total: -91.26 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.26 Total: -19.38 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.86 Total: 42.42 kcal Total: -75.31 5.03 -70.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.160 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds