Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36876 * 126.40233 * 2 1 4 4 C 1.34666 * 106.82054 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.01965 * 0.22599 * 4 3 2 6 6 C 1.30501 * 109.25490 * 359.62406 * 5 4 3 7 7 C 1.50705 * 125.64579 * 180.14599 * 6 5 4 8 8 O 1.42903 * 109.46591 * 270.26780 * 7 6 5 9 9 C 1.42901 * 113.99605 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47389 * 29.99959 * 9 8 7 11 11 C 1.50705 * 109.47135 * 270.00005 * 9 8 7 12 12 H 1.08000 * 119.99892 * 324.87324 * 11 9 8 13 13 C 1.37878 * 120.00185 * 144.87221 * 11 9 8 14 14 N 1.31512 * 119.99788 * 5.14233 * 13 11 9 15 15 Si 1.86793 * 120.00103 * 185.15106 * 13 11 9 16 16 H 1.48507 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47432 * 119.99760 * 15 13 11 18 18 H 1.48504 * 109.47255 * 240.00232 * 15 13 11 19 19 C 1.50691 * 109.47317 * 150.00309 * 9 8 7 20 20 C 1.38231 * 120.00225 * 37.69853 * 19 9 8 21 21 C 1.38240 * 120.00282 * 179.81522 * 20 19 9 22 22 C 1.38230 * 119.99937 * 0.39290 * 21 20 19 23 23 C 1.38243 * 119.99924 * 359.86437 * 22 21 20 24 24 C 1.38234 * 119.99725 * 359.94601 * 23 22 21 25 25 H 1.09004 * 109.47103 * 90.01866 * 1 2 3 26 26 H 1.08998 * 109.47048 * 210.02043 * 1 2 3 27 27 H 1.09001 * 109.46828 * 330.02108 * 1 2 3 28 28 H 1.08006 * 126.58589 * 359.97438 * 3 2 1 29 29 H 1.07999 * 125.99073 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.47177 * 30.27111 * 7 6 5 31 31 H 1.08993 * 109.46659 * 150.27338 * 7 6 5 32 32 H 0.96997 * 119.99997 * 179.97438 * 14 13 11 33 33 H 1.08003 * 120.00196 * 359.97438 * 20 19 9 34 34 H 1.08000 * 120.00090 * 180.23324 * 21 20 19 35 35 H 1.08000 * 120.00430 * 179.83344 * 22 21 20 36 36 H 1.07997 * 120.00019 * 179.97438 * 23 22 21 37 37 H 1.08004 * 119.99721 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 -0.0006 5 7 3.5095 -0.6904 -0.0059 6 6 2.2662 -1.0871 -0.0006 7 6 1.8017 -2.5207 -0.0009 8 8 1.6544 -2.9734 -1.3483 9 6 1.2148 -4.3284 -1.4614 10 1 0.5927 -4.5814 -0.6028 11 6 2.4117 -5.2432 -1.5016 12 1 3.3180 -4.9253 -1.9955 13 6 2.3498 -6.4860 -0.9078 14 7 1.2168 -6.9142 -0.3953 15 14 3.8750 -7.5616 -0.8312 16 1 5.0119 -6.8550 -1.4745 17 1 4.2084 -7.8476 0.5873 18 1 3.6176 -8.8374 -1.5462 19 6 0.4143 -4.4927 -2.7275 20 6 0.7902 -3.8201 -3.8752 21 6 0.0581 -3.9739 -5.0377 22 6 -1.0546 -4.7939 -5.0503 23 6 -1.4337 -5.4624 -3.9012 24 6 -0.6993 -5.3117 -2.7398 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 1.9613 2.1345 -0.0004 29 1 4.4369 1.2609 -0.0011 30 1 2.5365 -3.1408 0.5125 31 1 0.8433 -2.5921 0.5132 32 1 1.1731 -7.7887 0.0220 33 1 1.6574 -3.1764 -3.8643 34 1 0.3540 -3.4513 -5.9353 35 1 -1.6282 -4.9120 -5.9578 36 1 -2.3033 -6.1028 -3.9110 37 1 -0.9957 -5.8337 -1.8419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222936797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 43.074171 kcal Electronic energy + Delta-G solvation = -20408.594777 eV Core-core repulsion = 17345.185891 eV Total energy + Delta-G solvation = -3063.408886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75971 -38.45232 -36.56791 -33.77064 -32.99429 -31.02741 -30.01450 -29.75307 -27.02896 -26.61188 -25.34133 -22.98869 -21.60616 -21.10517 -20.18410 -19.54370 -16.97764 -16.72422 -16.13580 -15.78826 -15.09933 -14.62665 -14.55600 -14.30265 -13.76602 -13.49629 -13.38660 -13.16441 -12.71141 -12.60132 -12.49544 -12.21564 -11.99675 -11.69055 -11.23310 -10.99385 -10.75788 -10.32755 -10.21141 -10.00951 -9.63281 -9.49851 -9.34665 -8.66459 -8.51288 -8.16344 -8.04581 -7.67539 -6.20295 -4.26429 2.21239 2.29022 2.32179 3.00801 3.24955 3.33154 3.39731 3.42380 4.32139 4.56592 4.77329 4.81837 4.99725 5.14820 5.16655 5.36280 5.47052 5.59796 5.65501 5.71914 5.76883 5.86429 6.00577 6.32307 6.35089 6.44177 6.53780 6.55727 6.86220 6.97190 7.01204 7.06801 7.31844 7.40391 7.44424 7.66988 7.75476 7.91733 8.08672 8.25653 8.44763 8.94074 9.41382 10.84375 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.006872 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.470753 B = 4073.411576 C = 5538.612822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.454 5.454 3 C -0.069 4.069 4 C -0.032 4.032 5 N -0.477 5.477 6 C 0.225 3.775 7 C 0.160 3.840 8 O -0.393 6.393 9 C 0.235 3.765 10 H 0.056 0.944 11 C -0.523 4.523 12 H 0.067 0.933 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.898 3.102 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.283 1.283 19 C -0.028 4.028 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.131 4.131 24 C -0.106 4.106 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 10.885 -0.014 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.137 5.137 3 C -0.202 4.202 4 C -0.181 4.181 5 N -0.196 5.196 6 C -0.038 4.038 7 C 0.081 3.919 8 O -0.312 6.312 9 C 0.179 3.821 10 H 0.074 0.926 11 C -0.560 4.560 12 H 0.086 0.914 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.725 3.275 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.029 4.029 20 C -0.127 4.127 21 C -0.153 4.153 22 C -0.169 4.169 23 C -0.149 4.149 24 C -0.124 4.124 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.842 10.306 -0.089 11.387 hybrid contribution 0.022 -0.275 0.114 0.299 sum -4.821 10.031 0.025 11.129 Atomic orbital electron populations 1.22032 0.76832 1.04211 1.03928 1.45339 1.07596 1.06681 1.54119 1.22605 0.91555 0.92320 1.13688 1.22291 0.96214 0.91454 1.08128 1.70297 1.18757 1.11555 1.19027 1.23299 0.85466 0.90635 1.04379 1.20241 0.99182 0.85048 0.87429 1.87784 1.88949 1.31755 1.22695 1.18871 0.93460 0.77860 0.91876 0.92577 1.21512 0.98560 1.00164 1.35780 0.91446 1.24994 0.96435 0.97776 0.94241 1.69893 1.24834 1.19638 1.37946 0.86424 0.83103 0.80037 0.77932 1.19310 1.20669 1.20886 1.20319 0.92159 0.93713 0.96709 1.20948 0.99533 0.99840 0.92370 1.20975 0.96542 1.00061 0.97674 1.20834 0.98369 1.00008 0.97675 1.20971 1.00075 1.00372 0.93522 1.21037 0.94604 0.98461 0.98300 0.90268 0.89324 0.90015 0.81231 0.81613 0.89951 0.93340 0.92493 0.86631 0.87566 0.87679 0.87400 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.97 59.85 0.66 1.45 16 2 N -0.45 -6.85 3.15 -121.27 -0.38 -7.23 16 3 C -0.07 -0.93 11.58 -16.56 -0.19 -1.12 16 4 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 5 N -0.48 -9.51 11.25 -10.81 -0.12 -9.63 16 6 C 0.22 4.24 7.53 -155.41 -1.17 3.07 16 7 C 0.16 3.22 6.04 36.01 0.22 3.43 16 8 O -0.39 -9.07 9.20 -35.23 -0.32 -9.40 16 9 C 0.23 5.76 2.40 -29.04 -0.07 5.69 16 10 H 0.06 1.44 6.91 -51.93 -0.36 1.08 16 11 C -0.52 -14.17 8.62 -34.44 -0.30 -14.47 16 12 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 13 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 14 N -0.89 -23.84 12.84 55.43 0.71 -23.13 16 15 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.03 -0.65 4.97 -104.63 -0.52 -1.17 16 20 C -0.11 -2.34 9.36 -39.58 -0.37 -2.71 16 21 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 23 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.11 -2.29 9.67 -39.58 -0.38 -2.68 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.94 7.05 -51.93 -0.37 0.57 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.05 0.86 7.01 -51.93 -0.36 0.50 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.12 2.54 7.71 -52.48 -0.40 2.13 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.80 8.05 -52.48 -0.42 2.37 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -31.16 323.46 -8.74 -39.90 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.84 Total: 4.78 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -3.63 Total: -16.30 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.21 Total: -39.99 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.32 Total: -9.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.16 -8.74 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222936797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.971 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds