Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36876 * 126.40233 * 2 1 4 4 C 1.34666 * 106.82054 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.01965 * 0.22599 * 4 3 2 6 6 C 1.30501 * 109.25490 * 359.62406 * 5 4 3 7 7 C 1.50705 * 125.64579 * 180.14599 * 6 5 4 8 8 O 1.42903 * 109.46591 * 270.26780 * 7 6 5 9 9 C 1.42901 * 113.99605 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47389 * 29.99959 * 9 8 7 11 11 C 1.50705 * 109.47135 * 270.00005 * 9 8 7 12 12 H 1.08000 * 119.99892 * 324.87324 * 11 9 8 13 13 C 1.37878 * 120.00185 * 144.87221 * 11 9 8 14 14 N 1.31512 * 119.99788 * 5.14233 * 13 11 9 15 15 Si 1.86793 * 120.00103 * 185.15106 * 13 11 9 16 16 H 1.48507 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47432 * 119.99760 * 15 13 11 18 18 H 1.48504 * 109.47255 * 240.00232 * 15 13 11 19 19 C 1.50691 * 109.47317 * 150.00309 * 9 8 7 20 20 C 1.38231 * 120.00225 * 37.69853 * 19 9 8 21 21 C 1.38240 * 120.00282 * 179.81522 * 20 19 9 22 22 C 1.38230 * 119.99937 * 0.39290 * 21 20 19 23 23 C 1.38243 * 119.99924 * 359.86437 * 22 21 20 24 24 C 1.38234 * 119.99725 * 359.94601 * 23 22 21 25 25 H 1.09004 * 109.47103 * 90.01866 * 1 2 3 26 26 H 1.08998 * 109.47048 * 210.02043 * 1 2 3 27 27 H 1.09001 * 109.46828 * 330.02108 * 1 2 3 28 28 H 1.08006 * 126.58589 * 359.97438 * 3 2 1 29 29 H 1.07999 * 125.99073 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.47177 * 30.27111 * 7 6 5 31 31 H 1.08993 * 109.46659 * 150.27338 * 7 6 5 32 32 H 0.96997 * 119.99997 * 179.97438 * 14 13 11 33 33 H 1.08003 * 120.00196 * 359.97438 * 20 19 9 34 34 H 1.08000 * 120.00090 * 180.23324 * 21 20 19 35 35 H 1.08000 * 120.00430 * 179.83344 * 22 21 20 36 36 H 1.07997 * 120.00019 * 179.97438 * 23 22 21 37 37 H 1.08004 * 119.99721 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 -0.0006 5 7 3.5095 -0.6904 -0.0059 6 6 2.2662 -1.0871 -0.0006 7 6 1.8017 -2.5207 -0.0009 8 8 1.6544 -2.9734 -1.3483 9 6 1.2148 -4.3284 -1.4614 10 1 0.5927 -4.5814 -0.6028 11 6 2.4117 -5.2432 -1.5016 12 1 3.3180 -4.9253 -1.9955 13 6 2.3498 -6.4860 -0.9078 14 7 1.2168 -6.9142 -0.3953 15 14 3.8750 -7.5616 -0.8312 16 1 5.0119 -6.8550 -1.4745 17 1 4.2084 -7.8476 0.5873 18 1 3.6176 -8.8374 -1.5462 19 6 0.4143 -4.4927 -2.7275 20 6 0.7902 -3.8201 -3.8752 21 6 0.0581 -3.9739 -5.0377 22 6 -1.0546 -4.7939 -5.0503 23 6 -1.4337 -5.4624 -3.9012 24 6 -0.6993 -5.3117 -2.7398 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 1.9613 2.1345 -0.0004 29 1 4.4369 1.2609 -0.0011 30 1 2.5365 -3.1408 0.5125 31 1 0.8433 -2.5921 0.5132 32 1 1.1731 -7.7887 0.0220 33 1 1.6574 -3.1764 -3.8643 34 1 0.3540 -3.4513 -5.9353 35 1 -1.6282 -4.9120 -5.9578 36 1 -2.3033 -6.1028 -3.9110 37 1 -0.9957 -5.8337 -1.8419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222936797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = 25.435637 kcal Electronic energy + Delta-G solvation = -20409.359642 eV Core-core repulsion = 17345.185891 eV Total energy + Delta-G solvation = -3064.173751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.99645 -40.08747 -38.28339 -35.00854 -34.88540 -32.68983 -31.57145 -31.17157 -28.60362 -27.98206 -26.82383 -24.81673 -23.17259 -22.28216 -21.86091 -20.87188 -18.82274 -18.11582 -17.73010 -17.36443 -16.56224 -16.21923 -16.05447 -15.92752 -15.21538 -15.13335 -14.91270 -14.33335 -14.04455 -13.98256 -13.77083 -13.67214 -13.48415 -13.26864 -13.10579 -12.86189 -12.56189 -12.05266 -11.89244 -11.79431 -11.39177 -10.93007 -10.69166 -10.57541 -10.32305 -9.61204 -9.40603 -9.32679 -8.23996 -6.37828 0.71128 0.72160 1.01436 1.34868 1.37477 1.49755 1.89601 2.11859 2.35705 2.95195 3.15242 3.23451 3.72609 3.92195 3.98029 4.24304 4.25789 4.30163 4.38868 4.42395 4.55215 4.58540 4.65466 4.68625 4.83683 4.84687 4.95146 5.10132 5.35598 5.37354 5.38856 5.61325 5.77115 5.83739 5.86101 6.00326 6.08224 6.20506 6.33772 6.39917 6.89722 7.18418 7.32957 8.79049 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.006872 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.470753 B = 4073.411576 C = 5538.612822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.449 5.449 3 C -0.038 4.038 4 C -0.062 4.062 5 N -0.522 5.522 6 C 0.186 3.814 7 C 0.164 3.836 8 O -0.403 6.403 9 C 0.245 3.755 10 H 0.034 0.966 11 C -0.544 4.544 12 H 0.042 0.958 13 C 0.032 3.968 14 N -0.902 5.902 15 Si 0.951 3.049 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.274 1.274 19 C -0.057 4.057 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.126 4.126 24 C -0.124 4.124 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.223 0.777 29 H 0.191 0.809 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 12.253 -1.457 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.132 5.132 3 C -0.172 4.172 4 C -0.210 4.210 5 N -0.243 5.243 6 C -0.076 4.076 7 C 0.085 3.915 8 O -0.323 6.323 9 C 0.189 3.811 10 H 0.052 0.948 11 C -0.582 4.582 12 H 0.061 0.939 13 C -0.170 4.170 14 N -0.540 5.540 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.058 4.058 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.239 0.761 29 H 0.208 0.792 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.471 11.671 -1.526 13.432 hybrid contribution 0.467 -0.563 0.528 0.901 sum -6.004 11.109 -0.999 12.667 Atomic orbital electron populations 1.22357 0.74370 1.06219 1.04698 1.45561 1.09134 1.05961 1.52512 1.23402 0.90433 0.93735 1.09586 1.22863 0.98575 0.90186 1.09390 1.70172 1.19963 1.14304 1.19876 1.22786 0.86204 0.90716 1.07894 1.20143 0.99208 0.86156 0.85964 1.87752 1.88909 1.30991 1.24606 1.18612 0.92402 0.77960 0.92143 0.94831 1.21601 0.98848 1.01320 1.36431 0.93943 1.25591 0.98841 0.98609 0.93944 1.69963 1.25849 1.20003 1.38195 0.85618 0.79926 0.78591 0.78268 1.20121 1.19671 1.19949 1.20276 0.93417 0.95601 0.96499 1.20923 0.99949 1.00316 0.93351 1.21335 0.96060 0.99750 0.97460 1.21320 0.97622 0.97894 0.98710 1.21332 1.00269 1.00225 0.92606 1.21015 0.95190 0.98866 0.99217 0.90048 0.89690 0.85752 0.76066 0.79180 0.92984 0.91553 0.92160 0.88315 0.84253 0.83195 0.84214 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 10.97 127.77 1.40 2.68 16 2 N -0.45 -13.03 3.15 -537.60 -1.69 -14.73 16 3 C -0.04 -0.92 11.58 83.09 0.96 0.05 16 4 C -0.06 -1.90 11.87 83.52 0.99 -0.91 16 5 N -0.52 -21.53 11.25 -188.13 -2.12 -23.64 16 6 C 0.19 7.27 7.53 138.13 1.04 8.31 16 7 C 0.16 7.09 6.04 71.24 0.43 7.52 16 8 O -0.40 -19.94 9.20 -148.98 -1.37 -21.31 16 9 C 0.24 12.79 2.40 29.10 0.07 12.86 16 10 H 0.03 1.86 6.91 -2.39 -0.02 1.85 16 11 C -0.54 -31.33 8.62 25.60 0.22 -31.10 16 12 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 13 C 0.03 1.77 5.45 84.66 0.46 2.23 16 14 N -0.90 -50.27 12.84 21.45 0.28 -49.99 16 15 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 C -0.06 -2.75 4.97 -19.87 -0.10 -2.85 16 20 C -0.13 -5.55 9.36 22.27 0.21 -5.34 16 21 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 22 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 23 C -0.13 -4.45 10.05 22.27 0.22 -4.23 16 24 C -0.12 -5.47 9.67 22.27 0.22 -5.26 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.08 1.75 7.05 -2.39 -0.02 1.73 16 27 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.22 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.19 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.53 7.01 -2.39 -0.02 2.52 16 32 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.10 4.54 7.71 -2.91 -0.02 4.51 16 34 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.11 4.98 8.05 -2.91 -0.02 4.96 16 Total: -1.00 -72.33 323.46 4.75 -67.57 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.06 Total: 19.80 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 6.57 Total: -24.40 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -3.54 Total: -88.36 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.37 Total: -21.31 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.33 4.75 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222936797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.010 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds