Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40051 * 2 1 4 4 C 1.34661 * 106.82131 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02132 * 359.78407 * 4 3 2 6 6 C 1.30507 * 109.25233 * 0.36560 * 5 4 3 7 7 C 1.50704 * 125.64806 * 179.89698 * 6 5 4 8 8 O 1.42893 * 109.46946 * 269.69373 * 7 6 5 9 9 C 1.42905 * 113.99968 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47103 * 330.00317 * 9 8 7 11 11 C 1.50701 * 109.46937 * 89.99953 * 9 8 7 12 12 H 1.07999 * 119.99742 * 240.00092 * 11 9 8 13 13 C 1.37878 * 120.00001 * 59.99939 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 C 1.50703 * 109.47264 * 209.99856 * 9 8 7 20 20 C 1.38230 * 119.99758 * 324.72545 * 19 9 8 21 21 C 1.38243 * 119.99793 * 179.78660 * 20 19 9 22 22 C 1.38237 * 119.99712 * 0.44540 * 21 20 19 23 23 C 1.38240 * 119.99904 * 359.80633 * 22 21 20 24 24 C 1.38227 * 119.99854 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47147 * 269.97231 * 1 2 3 26 26 H 1.08997 * 109.47228 * 29.97521 * 1 2 3 27 27 H 1.09001 * 109.47028 * 149.97675 * 1 2 3 28 28 H 1.08002 * 126.58618 * 0.05879 * 3 2 1 29 29 H 1.07997 * 125.99290 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47079 * 149.68979 * 7 6 5 31 31 H 1.09006 * 109.46825 * 29.69352 * 7 6 5 32 32 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.00422 * 0.02562 * 20 19 9 34 34 H 1.07995 * 120.00035 * 180.27259 * 21 20 19 35 35 H 1.07999 * 120.00081 * 179.83438 * 22 21 20 36 36 H 1.08003 * 119.99689 * 179.97438 * 23 22 21 37 37 H 1.08010 * 119.99640 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0039 6 6 2.2663 -1.0870 -0.0007 7 6 1.8017 -2.5207 -0.0001 8 8 1.6538 -2.9739 -1.3472 9 6 1.2151 -4.3293 -1.4595 10 1 1.5717 -4.8989 -0.6013 11 6 -0.2909 -4.3683 -1.4976 12 1 -0.8364 -4.9093 -0.7386 13 6 -0.9723 -3.7134 -2.5015 14 7 -0.3080 -3.0550 -3.4260 15 14 -2.8391 -3.7624 -2.5491 16 1 -3.3842 -2.6195 -1.7734 17 1 -3.3009 -3.6700 -3.9574 18 1 -3.3162 -5.0367 -1.9543 19 6 1.7655 -4.9320 -2.7264 20 6 1.9006 -4.1532 -3.8603 21 6 2.4096 -4.7050 -5.0212 22 6 2.7747 -6.0379 -5.0505 23 6 2.6346 -6.8181 -3.9179 24 6 2.1300 -6.2651 -2.7560 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9613 2.1345 0.0009 29 1 4.4368 1.2611 -0.0003 30 1 0.8436 -2.5919 0.5146 31 1 2.5369 -3.1406 0.5132 32 1 -0.7874 -2.5946 -4.1324 33 1 1.6123 -3.1127 -3.8384 34 1 2.5194 -4.0954 -5.9059 35 1 3.1699 -6.4698 -5.9582 36 1 2.9195 -7.8596 -3.9410 37 1 2.0201 -6.8747 -1.8712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222936798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = 54.849079 kcal Electronic energy + Delta-G solvation = -20847.630066 eV Core-core repulsion = 17784.731778 eV Total energy + Delta-G solvation = -3062.898288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59926 -38.24511 -36.33793 -33.56418 -32.96901 -30.76190 -29.79679 -29.43320 -26.92776 -26.60636 -25.20752 -22.83116 -21.32290 -20.95968 -20.14778 -19.37483 -16.86743 -16.69241 -15.84833 -15.50010 -15.07648 -14.58481 -14.41343 -14.15654 -13.58164 -13.32707 -13.14973 -13.01077 -12.51590 -12.43679 -12.27025 -12.06787 -11.85220 -11.49826 -11.12051 -10.95890 -10.81607 -10.35607 -10.14818 -9.77212 -9.54224 -9.28914 -9.18401 -8.82808 -8.18555 -8.01352 -7.71873 -7.42023 -6.01119 -4.36803 2.38824 2.52602 2.67456 3.14248 3.21503 3.24491 3.27162 3.53005 4.24354 4.75979 5.06261 5.09967 5.11316 5.18205 5.40458 5.52987 5.72202 5.81317 5.85811 5.92682 5.99649 6.11212 6.14100 6.24948 6.40225 6.59870 6.72846 6.82127 6.92465 7.14767 7.15202 7.33045 7.54570 7.56767 7.59105 7.84665 8.01054 8.07158 8.33444 8.46588 8.56163 8.86771 9.38662 10.81463 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.007437 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.619002 B = 3764.132439 C = 4964.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.447 5.447 3 C -0.069 4.069 4 C -0.034 4.034 5 N -0.487 5.487 6 C 0.231 3.769 7 C 0.153 3.847 8 O -0.361 6.361 9 C 0.245 3.755 10 H 0.021 0.979 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.084 3.916 14 N -0.844 5.844 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.041 4.041 20 C -0.042 4.042 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 4.316 3.942 5.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.129 5.129 3 C -0.203 4.203 4 C -0.183 4.183 5 N -0.207 5.207 6 C -0.032 4.032 7 C 0.073 3.927 8 O -0.279 6.279 9 C 0.190 3.810 10 H 0.039 0.961 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.122 4.122 14 N -0.478 5.478 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.042 4.042 20 C -0.061 4.061 21 C -0.173 4.173 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.147 4.147 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.186 0.814 29 H 0.182 0.818 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.770 4.010 3.615 5.681 hybrid contribution -2.021 0.430 -0.126 2.070 sum -0.251 4.440 3.489 5.652 Atomic orbital electron populations 1.22106 0.76516 1.05744 1.02961 1.45264 1.07750 1.06498 1.53371 1.22585 0.91576 0.92399 1.13741 1.22209 0.96106 0.91463 1.08533 1.70241 1.18850 1.11646 1.19963 1.23220 0.85313 0.90784 1.03857 1.20218 0.98475 0.85182 0.88777 1.88122 1.87980 1.31267 1.20566 1.18590 0.92778 0.79394 0.90279 0.96128 1.21461 0.90818 1.33938 1.12036 0.92013 1.25002 0.98174 0.94399 0.94619 1.69863 1.34186 1.30866 1.12935 0.86682 0.85727 0.78582 0.77523 1.20538 1.21004 1.19774 1.19937 0.94117 0.92807 0.97296 1.21835 0.90432 1.03479 0.90306 1.21150 1.02351 0.95002 0.98778 1.20816 1.03292 0.94849 0.97396 1.20692 1.03775 0.98512 0.93862 1.20779 1.01044 0.95312 0.97527 0.91076 0.90185 0.87692 0.81442 0.81810 0.92606 0.92260 0.92761 0.82006 0.88114 0.88309 0.88012 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.79 59.85 0.65 1.63 16 2 N -0.45 -7.64 3.15 -121.28 -0.38 -8.02 16 3 C -0.07 -1.05 11.58 -16.56 -0.19 -1.25 16 4 C -0.03 -0.57 11.87 -17.81 -0.21 -0.78 16 5 N -0.49 -9.93 11.25 -10.82 -0.12 -10.05 16 6 C 0.23 4.61 7.53 -155.41 -1.17 3.44 16 7 C 0.15 3.11 5.83 36.01 0.21 3.32 16 8 O -0.36 -8.68 8.52 -35.23 -0.30 -8.98 16 9 C 0.25 5.90 2.59 -29.03 -0.08 5.83 16 10 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 11 C -0.55 -13.77 8.89 -34.44 -0.31 -14.08 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.08 2.12 5.24 -17.82 -0.09 2.03 16 14 N -0.84 -21.74 8.50 55.43 0.47 -21.27 16 15 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.04 -0.99 4.80 -104.63 -0.50 -1.49 16 20 C -0.04 -1.01 7.46 -39.58 -0.30 -1.31 16 21 C -0.15 -3.34 10.05 -39.58 -0.40 -3.73 16 22 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 23 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 24 C -0.13 -2.78 9.68 -39.59 -0.38 -3.17 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.77 7.66 -51.93 -0.40 1.38 16 28 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 31 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.16 4.27 5.50 -52.49 -0.29 3.98 16 34 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -29.50 316.07 -8.99 -38.49 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.83 Total: 6.70 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -3.57 Total: -16.22 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.03 Total: -39.35 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.30 Total: -8.98 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.50 -8.99 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222936798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.342 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds