Wall clock time and date at job start Mon Mar 30 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40051 * 2 1 4 4 C 1.34661 * 106.82131 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02132 * 359.78407 * 4 3 2 6 6 C 1.30507 * 109.25233 * 0.36560 * 5 4 3 7 7 C 1.50704 * 125.64806 * 179.89698 * 6 5 4 8 8 O 1.42893 * 109.46946 * 269.69373 * 7 6 5 9 9 C 1.42905 * 113.99968 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47103 * 330.00317 * 9 8 7 11 11 C 1.50701 * 109.46937 * 89.99953 * 9 8 7 12 12 H 1.07999 * 119.99742 * 240.00092 * 11 9 8 13 13 C 1.37878 * 120.00001 * 59.99939 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 C 1.50703 * 109.47264 * 209.99856 * 9 8 7 20 20 C 1.38230 * 119.99758 * 324.72545 * 19 9 8 21 21 C 1.38243 * 119.99793 * 179.78660 * 20 19 9 22 22 C 1.38237 * 119.99712 * 0.44540 * 21 20 19 23 23 C 1.38240 * 119.99904 * 359.80633 * 22 21 20 24 24 C 1.38227 * 119.99854 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47147 * 269.97231 * 1 2 3 26 26 H 1.08997 * 109.47228 * 29.97521 * 1 2 3 27 27 H 1.09001 * 109.47028 * 149.97675 * 1 2 3 28 28 H 1.08002 * 126.58618 * 0.05879 * 3 2 1 29 29 H 1.07997 * 125.99290 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47079 * 149.68979 * 7 6 5 31 31 H 1.09006 * 109.46825 * 29.69352 * 7 6 5 32 32 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.00422 * 0.02562 * 20 19 9 34 34 H 1.07995 * 120.00035 * 180.27259 * 21 20 19 35 35 H 1.07999 * 120.00081 * 179.83438 * 22 21 20 36 36 H 1.08003 * 119.99689 * 179.97438 * 23 22 21 37 37 H 1.08010 * 119.99640 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0039 6 6 2.2663 -1.0870 -0.0007 7 6 1.8017 -2.5207 -0.0001 8 8 1.6538 -2.9739 -1.3472 9 6 1.2151 -4.3293 -1.4595 10 1 1.5717 -4.8989 -0.6013 11 6 -0.2909 -4.3683 -1.4976 12 1 -0.8364 -4.9093 -0.7386 13 6 -0.9723 -3.7134 -2.5015 14 7 -0.3080 -3.0550 -3.4260 15 14 -2.8391 -3.7624 -2.5491 16 1 -3.3842 -2.6195 -1.7734 17 1 -3.3009 -3.6700 -3.9574 18 1 -3.3162 -5.0367 -1.9543 19 6 1.7655 -4.9320 -2.7264 20 6 1.9006 -4.1532 -3.8603 21 6 2.4096 -4.7050 -5.0212 22 6 2.7747 -6.0379 -5.0505 23 6 2.6346 -6.8181 -3.9179 24 6 2.1300 -6.2651 -2.7560 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9613 2.1345 0.0009 29 1 4.4368 1.2611 -0.0003 30 1 0.8436 -2.5919 0.5146 31 1 2.5369 -3.1406 0.5132 32 1 -0.7874 -2.5946 -4.1324 33 1 1.6123 -3.1127 -3.8384 34 1 2.5194 -4.0954 -5.9059 35 1 3.1699 -6.4698 -5.9582 36 1 2.9195 -7.8596 -3.9410 37 1 2.0201 -6.8747 -1.8712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222936798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:37 Heat of formation + Delta-G solvation = 39.509076 kcal Electronic energy + Delta-G solvation = -20848.295259 eV Core-core repulsion = 17784.731778 eV Total energy + Delta-G solvation = -3063.563480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.93386 -39.94491 -38.05915 -34.87828 -34.79732 -32.45101 -31.39538 -30.99127 -28.65545 -27.95020 -26.70276 -24.63794 -22.99095 -22.23980 -21.86807 -20.79898 -18.70918 -18.05347 -17.43581 -17.13144 -16.73000 -16.15929 -15.86001 -15.81243 -15.16296 -14.96299 -14.68949 -14.36773 -14.04868 -13.78971 -13.66939 -13.57401 -13.41296 -13.19102 -12.87861 -12.69208 -12.59860 -12.05306 -11.88075 -11.48435 -11.08884 -10.93390 -10.71068 -10.52530 -9.96204 -9.40938 -9.32796 -9.15118 -7.88291 -6.32330 0.82056 1.00194 1.08315 1.38757 1.43499 1.50772 1.96772 2.15931 2.40312 3.11199 3.31989 3.42263 3.85625 3.95557 4.03958 4.35160 4.37708 4.38882 4.44107 4.46811 4.57818 4.64373 4.67019 4.72815 4.85927 4.88577 5.12640 5.21973 5.43076 5.47668 5.63715 5.68698 5.88642 5.90679 6.04967 6.16291 6.23939 6.34913 6.54030 6.63548 7.04734 7.20477 7.46015 8.90789 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.007437 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.619002 B = 3764.132439 C = 4964.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.048 4.048 4 C -0.058 4.058 5 N -0.521 5.521 6 C 0.194 3.806 7 C 0.155 3.845 8 O -0.382 6.382 9 C 0.244 3.756 10 H 0.020 0.980 11 C -0.563 4.563 12 H 0.057 0.943 13 C 0.048 3.952 14 N -0.858 5.858 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.070 4.070 20 C -0.065 4.065 21 C -0.164 4.164 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.141 4.141 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.216 0.784 29 H 0.193 0.807 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.258 0.742 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 4.688 3.608 6.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.131 5.131 3 C -0.182 4.182 4 C -0.206 4.206 5 N -0.242 5.242 6 C -0.069 4.069 7 C 0.076 3.924 8 O -0.300 6.300 9 C 0.188 3.812 10 H 0.038 0.962 11 C -0.600 4.600 12 H 0.075 0.925 13 C -0.156 4.156 14 N -0.493 5.493 15 Si 0.768 3.232 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.070 4.070 20 C -0.084 4.084 21 C -0.182 4.182 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.210 0.790 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.495 4.381 3.294 5.681 hybrid contribution -1.857 0.355 -0.017 1.890 sum -0.362 4.736 3.277 5.771 Atomic orbital electron populations 1.22239 0.74978 1.05393 1.04683 1.45490 1.08831 1.06340 1.52392 1.23341 0.90716 0.93664 1.10486 1.22814 0.98199 0.90431 1.09205 1.70149 1.19529 1.13976 1.20547 1.22989 0.86006 0.91088 1.06772 1.20220 0.98666 0.86188 0.87309 1.88078 1.87995 1.31244 1.22707 1.18576 0.92431 0.79554 0.90623 0.96185 1.21618 0.91720 1.34385 1.12250 0.92527 1.25578 1.01573 0.94143 0.94327 1.70077 1.35078 1.31133 1.13055 0.85828 0.81515 0.78719 0.77129 1.19191 1.21464 1.19971 1.20127 0.95594 0.94096 0.97233 1.21632 0.92518 1.02479 0.91811 1.21384 1.02077 0.96411 0.98375 1.21233 1.01867 0.93886 0.98881 1.21142 1.01961 1.00301 0.92842 1.21059 1.01162 0.94586 0.99148 0.88324 0.87378 0.91106 0.76768 0.79038 0.92188 0.92323 0.93202 0.84882 0.86554 0.84495 0.84194 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 10.79 127.77 1.38 3.24 16 2 N -0.45 -14.96 3.15 -537.61 -1.69 -16.66 16 3 C -0.05 -1.35 11.58 83.08 0.96 -0.39 16 4 C -0.06 -1.88 11.87 83.52 0.99 -0.89 16 5 N -0.52 -21.54 11.25 -188.13 -2.12 -23.66 16 6 C 0.19 7.89 7.53 138.13 1.04 8.93 16 7 C 0.15 6.62 5.83 71.24 0.41 7.04 16 8 O -0.38 -19.28 8.52 -148.98 -1.27 -20.55 16 9 C 0.24 12.23 2.59 29.10 0.08 12.31 16 10 H 0.02 0.96 7.70 -2.39 -0.02 0.95 16 11 C -0.56 -29.27 8.89 25.60 0.23 -29.04 16 12 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 13 C 0.05 2.47 5.24 84.66 0.44 2.92 16 14 N -0.86 -45.61 8.50 21.45 0.18 -45.43 16 15 Si 0.94 40.63 29.54 68.60 2.03 42.66 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C -0.07 -3.45 4.80 -19.87 -0.10 -3.55 16 20 C -0.07 -3.26 7.46 22.27 0.17 -3.09 16 21 C -0.16 -7.01 10.05 22.27 0.22 -6.79 16 22 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 23 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 24 C -0.14 -6.07 9.68 22.26 0.22 -5.85 16 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.44 7.66 -2.39 -0.02 2.42 16 28 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.19 4.77 8.06 -2.91 -0.02 4.74 16 30 H 0.06 2.43 7.71 -2.39 -0.02 2.41 16 31 H 0.06 2.42 8.09 -2.38 -0.02 2.40 16 32 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 33 H 0.13 7.39 5.50 -2.91 -0.02 7.38 16 34 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -65.96 316.07 4.68 -61.29 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.06 Total: 27.65 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 6.49 Total: -25.30 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -3.63 Total: -85.74 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.27 Total: -20.55 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -65.96 4.68 -61.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222936798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.797 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds