Wall clock time and date at job start Mon Mar 30 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35048 * 126.39934 * 2 1 4 4 N 1.30494 * 108.70127 * 179.76613 * 3 2 1 5 5 C 1.34131 * 109.25521 * 0.37828 * 4 3 2 6 6 C 1.50701 * 125.98959 * 179.88078 * 5 4 3 7 7 O 1.42890 * 109.47135 * 179.69301 * 6 5 4 8 8 C 1.42900 * 113.99927 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47515 * 30.00330 * 8 7 6 10 10 C 1.50699 * 109.47374 * 270.00144 * 8 7 6 11 11 H 1.07998 * 119.99976 * 305.05441 * 10 8 7 12 12 C 1.37873 * 120.00274 * 125.06162 * 10 8 7 13 13 N 1.31513 * 120.00325 * 173.07161 * 12 10 8 14 14 Si 1.86804 * 119.99572 * 353.06886 * 12 10 8 15 15 H 1.48501 * 109.47097 * 85.12633 * 14 12 10 16 16 H 1.48507 * 109.47030 * 205.12081 * 14 12 10 17 17 H 1.48496 * 109.47329 * 325.12120 * 14 12 10 18 18 C 1.50706 * 109.46963 * 150.00140 * 8 7 6 19 19 C 1.38236 * 120.00294 * 35.38856 * 18 8 7 20 20 C 1.38227 * 120.00079 * 179.78917 * 19 18 8 21 21 C 1.38241 * 120.00084 * 0.43998 * 20 19 18 22 22 C 1.38231 * 120.00104 * 359.81119 * 21 20 19 23 23 C 1.38235 * 120.00035 * 215.65877 * 18 8 7 24 24 C 1.34669 * 108.02182 * 359.62333 * 5 4 3 25 25 H 1.08994 * 109.47118 * 270.00399 * 1 2 3 26 26 H 1.09005 * 109.47074 * 30.00087 * 1 2 3 27 27 H 1.08997 * 109.47184 * 150.00054 * 1 2 3 28 28 H 1.08001 * 125.64457 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.47005 * 59.69347 * 6 5 4 30 30 H 1.09003 * 109.47390 * 299.69655 * 6 5 4 31 31 H 0.96998 * 120.00136 * 179.97438 * 13 12 10 32 32 H 1.08004 * 119.99738 * 359.97438 * 19 18 8 33 33 H 1.08000 * 120.00043 * 180.26961 * 20 19 18 34 34 H 1.08001 * 119.99909 * 179.83761 * 21 20 19 35 35 H 1.07988 * 120.00164 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.00104 * 359.97438 * 23 18 8 37 37 H 1.08002 * 126.59230 * 180.20295 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 0.0050 5 6 3.5461 -0.6505 0.0001 6 6 4.7890 -1.5026 0.0008 7 8 4.4202 -2.8831 0.0016 8 6 5.5314 -3.7816 0.0017 9 1 6.3736 -3.3178 0.5152 10 6 5.9217 -4.0981 -1.4190 11 1 5.1863 -4.4886 -2.1068 12 6 7.2176 -3.8895 -1.8407 13 7 7.5931 -4.2910 -3.0354 14 14 8.4402 -3.0364 -0.7150 15 1 9.0518 -4.0345 0.1986 16 1 9.5026 -2.3968 -1.5321 17 1 7.7380 -1.9995 0.0832 18 6 5.1484 -5.0539 0.7129 19 6 3.8621 -5.5478 0.6015 20 6 3.5121 -6.7171 1.2502 21 6 4.4459 -7.3878 2.0178 22 6 5.7307 -6.8913 2.1334 23 6 6.0819 -5.7242 1.4811 24 6 2.2772 -1.1018 0.0000 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9335 2.1144 0.0004 29 1 5.3791 -1.2837 0.8908 30 1 5.3795 -1.2847 -0.8892 31 1 8.5048 -4.1439 -3.3322 32 1 3.1314 -5.0215 0.0052 33 1 2.5083 -7.1052 1.1597 34 1 4.1716 -8.3001 2.5268 35 1 6.4603 -7.4155 2.7327 36 1 7.0858 -5.3363 1.5713 37 1 1.9613 -2.1346 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223553555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:43 Heat of formation + Delta-G solvation = 27.294505 kcal Electronic energy + Delta-G solvation = -20234.613003 eV Core-core repulsion = 17170.519860 eV Total energy + Delta-G solvation = -3064.093144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95455 -40.20148 -38.39788 -35.20209 -34.72783 -32.91095 -31.64420 -30.89771 -29.01444 -28.50146 -26.33073 -24.57035 -23.28070 -22.17230 -21.61467 -21.20790 -19.31729 -18.15075 -17.54946 -17.33899 -16.81707 -16.42778 -16.03500 -15.56305 -15.31586 -15.03859 -14.84439 -14.76833 -14.51324 -14.10385 -14.00218 -13.59237 -13.40980 -13.32502 -13.19821 -12.91610 -12.53929 -12.16215 -11.90774 -11.81743 -11.29569 -10.93739 -10.88862 -10.54769 -10.28858 -9.67073 -9.40138 -9.28655 -8.42657 -6.49570 0.62796 0.67075 1.13808 1.23235 1.27763 1.34690 2.00037 2.09933 2.20654 2.65602 3.00418 3.13575 3.86967 4.01872 4.11538 4.12042 4.26285 4.31364 4.37407 4.41792 4.43901 4.50104 4.61069 4.67816 4.75228 4.85796 4.89221 4.96564 5.23282 5.28612 5.32407 5.38216 5.68664 5.71242 5.75139 5.90364 6.05981 6.28292 6.36169 6.51037 6.66834 7.12684 7.19449 8.74068 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.006618 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.946090 B = 4230.122532 C = 5679.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.464 5.464 3 C 0.190 3.810 4 N -0.537 5.537 5 C -0.032 4.032 6 C 0.161 3.839 7 O -0.391 6.391 8 C 0.221 3.779 9 H 0.032 0.968 10 C -0.525 4.525 11 H 0.034 0.966 12 C 0.029 3.971 13 N -0.930 5.930 14 Si 0.920 3.080 15 H -0.250 1.250 16 H -0.277 1.277 17 H -0.253 1.253 18 C -0.067 4.067 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.028 4.028 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.251 0.749 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.271 0.729 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 4.130 11.318 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.147 5.147 3 C -0.093 4.093 4 N -0.258 5.258 5 C -0.159 4.159 6 C 0.083 3.917 7 O -0.310 6.310 8 C 0.165 3.835 9 H 0.049 0.951 10 C -0.563 4.563 11 H 0.052 0.948 12 C -0.171 4.171 13 N -0.569 5.569 14 Si 0.743 3.257 15 H -0.174 1.174 16 H -0.203 1.203 17 H -0.177 1.177 18 C -0.068 4.068 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.138 4.138 23 C -0.164 4.164 24 C -0.162 4.162 25 H 0.111 0.889 26 H 0.134 0.866 27 H 0.110 0.890 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.127 0.873 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.345 4.542 11.193 18.000 hybrid contribution 0.644 -0.019 -0.469 0.797 sum -12.701 4.523 10.724 17.227 Atomic orbital electron populations 1.22399 0.73331 1.06418 1.05103 1.45668 1.09456 1.05772 1.53813 1.25739 0.84270 0.95324 1.03995 1.69932 1.22598 1.10924 1.22311 1.20308 0.94344 0.90785 1.10488 1.19899 0.92068 0.81176 0.98578 1.87650 1.34277 1.13916 1.95169 1.18943 0.85506 0.85753 0.93324 0.95060 1.21373 0.95743 1.43338 0.95844 0.94753 1.25864 0.99817 0.94988 0.96448 1.70020 1.19374 1.46857 1.20690 0.86139 0.79197 0.80516 0.79804 1.17441 1.20255 1.17692 1.20127 0.94896 0.97092 0.94676 1.20982 0.95701 0.97053 1.00045 1.21423 1.00819 0.94542 0.97235 1.21414 0.93117 1.00868 0.99870 1.21334 0.97700 0.95165 0.99571 1.21047 0.98752 0.97752 0.98827 1.22471 0.90295 0.93597 1.09797 0.88938 0.86631 0.89043 0.73306 0.93816 0.94984 0.91980 0.87085 0.83685 0.82909 0.83595 0.87326 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.18 127.77 1.43 2.19 16 2 N -0.46 -11.07 3.15 -552.53 -1.74 -12.81 16 3 C 0.19 4.83 12.56 180.26 2.26 7.10 16 4 N -0.54 -19.85 11.25 -188.31 -2.12 -21.97 16 5 C -0.03 -1.30 7.07 41.39 0.29 -1.01 16 6 C 0.16 7.39 6.36 71.24 0.45 7.84 16 7 O -0.39 -18.75 8.42 -148.98 -1.25 -20.00 16 8 C 0.22 11.15 2.30 29.10 0.07 11.22 16 9 H 0.03 1.58 4.23 -2.39 -0.01 1.57 16 10 C -0.53 -31.24 9.16 25.60 0.23 -31.00 16 11 H 0.03 2.30 8.06 -2.91 -0.02 2.27 16 12 C 0.03 1.70 5.47 84.65 0.46 2.17 16 13 N -0.93 -58.55 13.96 21.45 0.30 -58.25 16 14 Si 0.92 44.50 27.04 68.60 1.86 46.35 16 15 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.25 -11.74 6.66 99.48 0.66 -11.08 16 18 C -0.07 -3.04 4.98 -19.86 -0.10 -3.14 16 19 C -0.12 -4.81 9.35 22.27 0.21 -4.60 16 20 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 22 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 23 C -0.15 -5.83 9.68 22.27 0.22 -5.62 16 24 C -0.03 -0.91 10.89 83.09 0.91 -0.01 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.25 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.04 1.96 8.09 -2.38 -0.02 1.94 16 30 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.11 4.53 7.64 -2.91 -0.02 4.51 16 33 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 34 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.15 3.59 8.06 -2.92 -0.02 3.56 16 36 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.18 5.77 7.86 -2.91 -0.02 5.75 16 Total: -1.00 -78.59 320.90 5.16 -73.44 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.01 Total: 18.95 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 7.10 Total: -25.70 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.56 Total: -93.03 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.25 Total: -20.00 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.86 Total: 46.35 kcal Total: -78.59 5.16 -73.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223553555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.732 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds