Wall clock time and date at job start Mon Mar 30 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99613 * 2 1 4 4 C 1.38482 * 119.98189 * 359.97438 * 3 2 1 5 5 C 1.39533 * 119.78571 * 180.02562 * 4 3 2 6 6 C 1.43198 * 120.12473 * 179.97438 * 5 4 3 7 7 N 5.84235 * 81.26883 * 359.97438 * 2 1 3 8 8 C 1.39665 * 119.75624 * 0.02562 * 5 4 3 9 9 C 1.37953 * 119.95621 * 359.97438 * 8 5 4 10 10 C 1.38291 * 120.21582 * 0.02562 * 9 8 5 11 11 C 1.50702 * 119.87745 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.46573 * 260.01651 * 11 10 9 13 13 C 1.47480 * 111.00503 * 265.96897 * 12 11 10 14 14 C 1.53514 * 87.93548 * 221.30440 * 13 12 11 15 15 C 1.50694 * 114.34522 * 139.68601 * 14 13 12 16 16 H 1.07998 * 119.99583 * 266.06968 * 15 14 13 17 17 C 1.37880 * 120.00001 * 86.07126 * 15 14 13 18 18 N 1.31514 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99633 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47163 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46659 * 120.00207 * 19 17 15 22 22 H 1.48496 * 109.46900 * 240.00165 * 19 17 15 23 23 C 1.47489 * 110.99732 * 170.00004 * 12 11 10 24 24 H 1.08996 * 109.46644 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47328 * 300.00202 * 1 2 3 26 26 H 1.08990 * 109.47227 * 60.00274 * 1 2 3 27 27 H 1.07993 * 120.10226 * 0.05193 * 4 3 2 28 28 H 1.07997 * 120.02545 * 179.72165 * 8 5 4 29 29 H 1.08003 * 119.89764 * 179.97438 * 9 8 5 30 30 H 1.08996 * 109.46878 * 20.01468 * 11 10 9 31 31 H 1.09000 * 109.46798 * 140.01973 * 11 10 9 32 32 H 1.08999 * 113.47145 * 336.07030 * 13 12 11 33 33 H 1.09005 * 113.47586 * 106.53102 * 13 12 11 34 34 H 1.09005 * 114.16575 * 272.37738 * 14 13 12 35 35 H 0.96994 * 119.99821 * 179.97438 * 18 17 15 36 36 H 1.09004 * 113.47376 * 253.47302 * 23 12 11 37 37 H 1.09002 * 113.47180 * 23.87859 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2913 2.3722 -0.0005 5 6 1.9289 3.6133 -0.0011 6 6 1.1557 4.8185 -0.0022 7 7 0.5422 5.7746 -0.0026 8 6 3.3242 3.6758 -0.0016 9 6 4.0658 2.5125 -0.0011 10 6 3.4323 1.2833 -0.0005 11 6 4.2500 0.0173 -0.0005 12 7 4.3134 -0.5245 -1.3645 13 6 3.2543 -1.5269 -1.5848 14 6 4.2898 -2.3741 -2.3376 15 6 4.2050 -3.8523 -2.0574 16 1 4.8214 -4.2922 -1.2874 17 6 3.3404 -4.6432 -2.7842 18 7 2.5902 -4.1076 -3.7222 19 14 3.2358 -6.4758 -2.4373 20 1 4.1761 -6.8269 -1.3428 21 1 1.8509 -6.8242 -2.0303 22 1 3.5970 -7.2329 -3.6627 23 6 5.2936 -1.6230 -1.4517 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 0.2128 2.3172 -0.0001 28 1 3.8222 4.6340 -0.0066 29 1 5.1447 2.5620 -0.0019 30 1 5.2583 0.2362 0.3508 31 1 3.7858 -0.7149 0.6601 32 1 2.8985 -1.9918 -0.6654 33 1 2.4427 -1.1690 -2.2184 34 1 4.3701 -2.1412 -3.3994 35 1 1.9823 -4.6641 -4.2337 36 1 6.2104 -1.3465 -1.9725 37 1 5.4828 -2.1130 -0.4966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231616577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:53 Heat of formation + Delta-G solvation = 55.079633 kcal Electronic energy + Delta-G solvation = -20192.408457 eV Core-core repulsion = 17129.520167 eV Total energy + Delta-G solvation = -3062.888290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45188 -38.67514 -37.80196 -36.35239 -33.17816 -32.15714 -30.35002 -28.81897 -27.36521 -25.90915 -24.70346 -23.46248 -22.29530 -21.25758 -19.46046 -18.57344 -16.79034 -16.71013 -16.05381 -15.82632 -15.55974 -14.77851 -14.35231 -14.22331 -14.04348 -13.97739 -13.85875 -13.47499 -13.10207 -12.65351 -12.41867 -12.06724 -11.88799 -11.71244 -11.49936 -11.35578 -11.06216 -11.00242 -10.88341 -10.56477 -10.22888 -9.72768 -9.35118 -8.92691 -8.85912 -8.43353 -8.16844 -7.94623 -6.04183 -4.08044 0.67203 1.32165 2.50594 2.85047 3.27468 3.33215 3.36091 3.39491 3.72453 3.77957 4.40864 4.66484 4.79251 4.92047 5.01045 5.20365 5.22552 5.24664 5.29830 5.49292 5.57411 5.60814 5.65086 5.97147 6.04149 6.14065 6.17636 6.38579 6.40498 6.57322 6.62269 6.72155 6.79313 7.22621 7.26260 7.31700 7.39970 7.75226 7.93111 8.11198 8.40021 8.95123 9.56523 11.05357 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.004282 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.544416 B = 6538.087715 C = 7099.289108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.140 3.860 4 C -0.165 4.165 5 C -0.005 4.005 6 C 0.263 3.737 7 N -0.427 5.427 8 C -0.107 4.107 9 C -0.074 4.074 10 C -0.058 4.058 11 C 0.058 3.942 12 N -0.480 5.480 13 C 0.021 3.979 14 C 0.037 3.963 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.005 4.005 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 10.587 8.858 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.093 3.907 4 C -0.186 4.186 5 C -0.009 4.009 6 C -0.052 4.052 7 N -0.103 5.103 8 C -0.128 4.128 9 C -0.093 4.093 10 C -0.060 4.060 11 C -0.070 4.070 12 N -0.202 5.202 13 C -0.107 4.107 14 C 0.018 3.982 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.134 4.134 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.629 12.431 8.318 15.046 hybrid contribution -0.387 -1.794 0.746 1.981 sum -2.015 10.638 9.064 14.120 Atomic orbital electron populations 1.23106 0.78516 1.04530 1.00865 1.86306 1.21116 1.25363 1.87833 1.18684 0.91817 0.84314 0.95840 1.21128 1.00206 0.90680 1.06635 1.15638 0.91797 0.86545 1.06912 1.25758 0.93192 0.92914 0.93385 1.81232 1.08850 1.10889 1.09297 1.20992 0.91284 0.99212 1.01308 1.20803 1.00302 0.90154 0.98006 1.19530 0.90508 0.96294 0.99662 1.21546 0.97997 0.93294 0.94153 1.68940 1.07644 1.23283 1.20335 1.23998 0.95621 0.91212 0.99903 1.20141 0.89513 0.93378 0.95205 1.21068 1.22759 0.92285 1.19068 0.92448 1.25003 0.95528 0.98339 0.94698 1.69981 1.24733 1.35502 1.22115 0.86596 0.77823 0.85708 0.78219 1.19738 1.21060 1.20976 1.24014 0.97025 0.92015 1.00325 0.87797 0.92992 0.92544 0.84772 0.85090 0.84338 0.90888 0.92486 0.92437 0.92213 0.91997 0.93015 0.92034 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.34 7.82 -19.47 -0.15 -4.49 16 3 C 0.14 1.93 6.64 -39.28 -0.26 1.67 16 4 C -0.17 -1.94 8.74 -39.01 -0.34 -2.28 16 5 C -0.01 -0.06 5.73 -106.96 -0.61 -0.67 16 6 C 0.26 3.20 15.33 -22.47 -0.34 2.85 16 7 N -0.43 -5.98 18.54 41.84 0.78 -5.20 16 8 C -0.11 -1.09 9.75 -39.15 -0.38 -1.48 16 9 C -0.07 -0.83 9.64 -39.67 -0.38 -1.21 16 10 C -0.06 -0.80 5.48 -104.39 -0.57 -1.37 16 11 C 0.06 0.91 4.70 -4.98 -0.02 0.89 16 12 N -0.48 -9.21 6.32 -246.07 -1.55 -10.76 16 13 C 0.02 0.47 5.71 -7.54 -0.04 0.43 16 14 C 0.04 0.90 3.76 -91.24 -0.34 0.55 16 15 C -0.51 -13.66 8.83 -34.44 -0.30 -13.96 16 16 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -25.09 13.26 55.43 0.74 -24.35 16 19 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.01 -0.10 7.25 -7.54 -0.05 -0.16 16 24 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.13 1.34 6.29 -52.49 -0.33 1.01 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.14 1.26 8.03 -52.48 -0.42 0.84 16 30 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 31 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 32 H 0.06 1.30 7.08 -51.93 -0.37 0.93 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.68 8.11 -51.93 -0.42 1.26 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.05 7.87 -51.93 -0.41 0.64 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -29.57 319.86 -7.92 -37.49 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.76 Total: -1.36 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.77 Total: -11.76 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.04 Total: -40.31 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.15 Total: -4.49 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.57 -7.92 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231616577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.573 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds