Wall clock time and date at job start Mon Mar 30 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99613 * 2 1 4 4 C 1.38482 * 119.98189 * 359.97438 * 3 2 1 5 5 C 1.39533 * 119.78571 * 180.02562 * 4 3 2 6 6 C 1.43198 * 120.12473 * 179.97438 * 5 4 3 7 7 N 5.84235 * 81.26883 * 359.97438 * 2 1 3 8 8 C 1.39665 * 119.75624 * 0.02562 * 5 4 3 9 9 C 1.37953 * 119.95621 * 359.97438 * 8 5 4 10 10 C 1.38291 * 120.21582 * 0.02562 * 9 8 5 11 11 C 1.50702 * 119.87745 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.46573 * 260.01651 * 11 10 9 13 13 C 1.47480 * 111.00503 * 265.96897 * 12 11 10 14 14 C 1.53514 * 87.93548 * 221.30440 * 13 12 11 15 15 C 1.50694 * 114.34522 * 139.68601 * 14 13 12 16 16 H 1.07998 * 119.99583 * 266.06968 * 15 14 13 17 17 C 1.37880 * 120.00001 * 86.07126 * 15 14 13 18 18 N 1.31514 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99633 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47163 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46659 * 120.00207 * 19 17 15 22 22 H 1.48496 * 109.46900 * 240.00165 * 19 17 15 23 23 C 1.47489 * 110.99732 * 170.00004 * 12 11 10 24 24 H 1.08996 * 109.46644 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47328 * 300.00202 * 1 2 3 26 26 H 1.08990 * 109.47227 * 60.00274 * 1 2 3 27 27 H 1.07993 * 120.10226 * 0.05193 * 4 3 2 28 28 H 1.07997 * 120.02545 * 179.72165 * 8 5 4 29 29 H 1.08003 * 119.89764 * 179.97438 * 9 8 5 30 30 H 1.08996 * 109.46878 * 20.01468 * 11 10 9 31 31 H 1.09000 * 109.46798 * 140.01973 * 11 10 9 32 32 H 1.08999 * 113.47145 * 336.07030 * 13 12 11 33 33 H 1.09005 * 113.47586 * 106.53102 * 13 12 11 34 34 H 1.09005 * 114.16575 * 272.37738 * 14 13 12 35 35 H 0.96994 * 119.99821 * 179.97438 * 18 17 15 36 36 H 1.09004 * 113.47376 * 253.47302 * 23 12 11 37 37 H 1.09002 * 113.47180 * 23.87859 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2913 2.3722 -0.0005 5 6 1.9289 3.6133 -0.0011 6 6 1.1557 4.8185 -0.0022 7 7 0.5422 5.7746 -0.0026 8 6 3.3242 3.6758 -0.0016 9 6 4.0658 2.5125 -0.0011 10 6 3.4323 1.2833 -0.0005 11 6 4.2500 0.0173 -0.0005 12 7 4.3134 -0.5245 -1.3645 13 6 3.2543 -1.5269 -1.5848 14 6 4.2898 -2.3741 -2.3376 15 6 4.2050 -3.8523 -2.0574 16 1 4.8214 -4.2922 -1.2874 17 6 3.3404 -4.6432 -2.7842 18 7 2.5902 -4.1076 -3.7222 19 14 3.2358 -6.4758 -2.4373 20 1 4.1761 -6.8269 -1.3428 21 1 1.8509 -6.8242 -2.0303 22 1 3.5970 -7.2329 -3.6627 23 6 5.2936 -1.6230 -1.4517 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 0.2128 2.3172 -0.0001 28 1 3.8222 4.6340 -0.0066 29 1 5.1447 2.5620 -0.0019 30 1 5.2583 0.2362 0.3508 31 1 3.7858 -0.7149 0.6601 32 1 2.8985 -1.9918 -0.6654 33 1 2.4427 -1.1690 -2.2184 34 1 4.3701 -2.1412 -3.3994 35 1 1.9823 -4.6641 -4.2337 36 1 6.2104 -1.3465 -1.9725 37 1 5.4828 -2.1130 -0.4966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231616577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:53 Heat of formation + Delta-G solvation = 36.417973 kcal Electronic energy + Delta-G solvation = -20193.217687 eV Core-core repulsion = 17129.520167 eV Total energy + Delta-G solvation = -3063.697521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49446 -40.23812 -38.76846 -37.37035 -34.85746 -33.62211 -31.26828 -30.28900 -28.27421 -27.55014 -26.41226 -24.95022 -23.19694 -22.55381 -20.42513 -20.33954 -18.62400 -17.75238 -17.06343 -16.89622 -16.81600 -16.39728 -15.96700 -15.59202 -15.13967 -15.01562 -14.99168 -14.69405 -14.22527 -13.91757 -13.72560 -13.32386 -13.22140 -13.13853 -12.92459 -12.79060 -12.50067 -12.36641 -12.15248 -11.94303 -11.77621 -11.48083 -11.13325 -10.77851 -10.43920 -9.90253 -9.57953 -9.14211 -8.10139 -6.20541 -0.27737 0.43584 1.43726 1.45964 1.53835 1.57147 1.87823 2.42421 2.46000 2.76764 2.84142 3.19518 3.55404 3.77581 3.89067 4.05946 4.16374 4.33003 4.38078 4.40035 4.48008 4.54359 4.67040 4.73179 4.78365 4.85482 4.91761 4.98195 5.06714 5.10795 5.27687 5.38590 5.44137 5.65289 5.69216 5.73628 5.92385 6.36173 6.36419 6.43939 6.50684 6.89088 7.47382 8.99671 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.004282 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.544416 B = 6538.087715 C = 7099.289108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.122 3.878 4 C -0.163 4.163 5 C -0.006 4.006 6 C 0.283 3.717 7 N -0.459 5.459 8 C -0.095 4.095 9 C -0.066 4.066 10 C -0.082 4.082 11 C 0.061 3.939 12 N -0.476 5.476 13 C 0.044 3.956 14 C 0.013 3.987 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.015 3.985 18 N -0.922 5.922 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.011 3.989 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.165 0.835 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 11.446 10.175 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.075 3.925 4 C -0.184 4.184 5 C -0.009 4.009 6 C -0.031 4.031 7 N -0.135 5.135 8 C -0.115 4.115 9 C -0.084 4.084 10 C -0.084 4.084 11 C -0.067 4.067 12 N -0.198 5.198 13 C -0.086 4.086 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.118 4.118 24 H 0.121 0.879 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.686 13.300 9.651 16.447 hybrid contribution -0.667 -1.987 0.344 2.124 sum -1.354 11.313 9.995 15.156 Atomic orbital electron populations 1.23276 0.77113 1.04987 1.02197 1.86248 1.22850 1.26450 1.88244 1.18881 0.92197 0.84532 0.96852 1.21224 1.00909 0.90258 1.06042 1.15718 0.92376 0.85862 1.06984 1.25750 0.92454 0.92524 0.92382 1.81263 1.09775 1.11952 1.10484 1.21304 0.90677 1.00246 0.99309 1.21070 1.01616 0.89174 0.96558 1.19588 0.90544 0.96476 1.01755 1.21537 0.99883 0.93803 0.91460 1.68841 1.05619 1.21935 1.23430 1.23575 0.94937 0.91501 0.98539 1.20113 0.93035 0.93320 0.94096 1.21411 1.22477 0.93630 1.18908 0.92278 1.25797 0.95261 1.02787 0.94572 1.70108 1.25619 1.37104 1.23264 0.85561 0.77932 0.80309 0.78181 1.18750 1.20723 1.20775 1.23829 0.96778 0.91520 0.99680 0.87904 0.90605 0.92184 0.83479 0.82139 0.81781 0.88193 0.93702 0.93254 0.94737 0.95600 0.93025 0.90538 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -9.66 7.82 -92.60 -0.72 -10.39 16 3 C 0.12 3.25 6.64 22.47 0.15 3.40 16 4 C -0.16 -3.58 8.74 22.64 0.20 -3.38 16 5 C -0.01 -0.11 5.73 -21.38 -0.12 -0.24 16 6 C 0.28 6.31 15.33 88.33 1.35 7.66 16 7 N -0.46 -12.12 18.54 19.00 0.35 -11.77 16 8 C -0.09 -1.61 9.75 22.55 0.22 -1.39 16 9 C -0.07 -1.25 9.64 22.21 0.21 -1.04 16 10 C -0.08 -2.12 5.48 -19.71 -0.11 -2.23 16 11 C 0.06 1.81 4.70 85.56 0.40 2.21 16 12 N -0.48 -17.99 6.32 -932.43 -5.89 -23.88 16 13 C 0.04 1.99 5.71 83.58 0.48 2.46 16 14 C 0.01 0.68 3.76 -11.20 -0.04 0.63 16 15 C -0.53 -28.35 8.83 25.60 0.23 -28.13 16 16 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.82 5.46 84.66 0.46 1.28 16 18 N -0.92 -53.65 13.26 21.45 0.28 -53.37 16 19 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C 0.01 0.42 7.25 83.57 0.61 1.02 16 24 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.08 1.23 7.66 -2.38 -0.02 1.22 16 26 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 27 H 0.15 2.73 6.29 -2.91 -0.02 2.71 16 28 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.16 2.25 8.03 -2.91 -0.02 2.23 16 30 H 0.10 2.40 7.93 -2.39 -0.02 2.38 16 31 H 0.04 1.45 7.00 -2.39 -0.02 1.43 16 32 H 0.05 2.30 7.08 -2.39 -0.02 2.28 16 33 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.03 1.46 8.11 -2.38 -0.02 1.44 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 37 H 0.06 2.37 7.87 -2.39 -0.02 2.36 16 Total: -1.00 -64.82 319.86 2.27 -62.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.08 Total: 8.40 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 5.15 Total: -16.21 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -5.25 Total: -89.02 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.72 Total: -10.39 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -64.82 2.27 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231616577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.966 kcal (2) G-P(sol) polarization free energy of solvation -64.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds