Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46909 * 111.00060 * 2 1 4 4 C 1.50704 * 109.46971 * 293.95303 * 3 2 1 5 5 H 1.08003 * 119.99836 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99918 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99758 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00057 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47085 * 89.99871 * 8 6 4 10 10 H 1.48501 * 109.47106 * 210.00139 * 8 6 4 11 11 H 1.48504 * 109.46839 * 330.00056 * 8 6 4 12 12 C 1.46900 * 111.00035 * 123.94893 * 2 1 3 13 13 C 1.50706 * 109.46733 * 66.05093 * 12 2 1 14 14 C 1.36206 * 120.13487 * 259.99630 * 13 12 2 15 15 C 1.39196 * 120.94451 * 179.97438 * 14 13 12 16 16 C 1.36598 * 121.00113 * 0.02562 * 15 14 13 17 17 O 1.35836 * 120.18457 * 180.02562 * 16 15 14 18 18 C 1.41045 * 119.63771 * 359.97438 * 16 15 14 19 19 N 1.33597 * 121.08515 * 179.72589 * 18 16 15 20 20 C 1.31077 * 121.33328 * 179.72236 * 19 18 16 21 21 C 1.39341 * 121.73223 * 0.57732 * 20 19 18 22 22 C 1.36572 * 119.93378 * 359.70529 * 21 20 19 23 23 C 1.40411 * 120.13863 * 79.99869 * 13 12 2 24 24 H 1.09003 * 109.47252 * 296.04911 * 1 2 3 25 25 H 1.09005 * 109.46812 * 56.04624 * 1 2 3 26 26 H 1.08999 * 109.47166 * 176.04638 * 1 2 3 27 27 H 1.08999 * 109.46728 * 53.95274 * 3 2 1 28 28 H 1.09000 * 109.46943 * 173.95576 * 3 2 1 29 29 H 0.96998 * 120.00163 * 179.97438 * 7 6 4 30 30 H 1.08991 * 109.47287 * 306.05113 * 12 2 1 31 31 H 1.09005 * 109.46936 * 186.04597 * 12 2 1 32 32 H 1.08004 * 119.52402 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.49901 * 179.97438 * 15 14 13 34 34 H 0.96703 * 114.00117 * 269.98237 * 17 16 15 35 35 H 1.08003 * 119.13830 * 180.28830 * 20 19 18 36 36 H 1.08004 * 120.03410 * 179.73962 * 21 20 19 37 37 H 1.07993 * 120.92825 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 1.7135 3.9393 -2.6615 8 14 2.9987 4.2767 -0.2305 9 1 4.4513 4.0644 -0.4541 10 1 2.6903 5.7264 -0.3227 11 1 2.6271 3.7763 1.1174 12 6 1.9954 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 6 0.5795 -2.7452 1.6523 15 6 0.2332 -4.0861 1.5123 16 6 0.9437 -4.9142 0.6904 17 8 0.5908 -6.2200 0.5659 18 6 2.0451 -4.4057 -0.0291 19 7 2.7634 -5.1909 -0.8367 20 6 3.7846 -4.7222 -1.5117 21 6 4.1789 -3.3894 -1.4128 22 6 3.4911 -2.5337 -0.6005 23 6 2.3917 -3.0401 0.1185 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5611 1.9274 0.8309 28 1 3.0798 1.3444 0.1082 29 1 1.9874 4.8556 -2.8232 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6610 1.1756 32 1 0.0015 -2.1119 2.3090 33 1 -0.6095 -4.4780 2.0625 34 1 1.0231 -6.8066 1.2015 35 1 4.3377 -5.3876 -2.1581 36 1 5.0273 -3.0333 -1.9784 37 1 3.7830 -1.4978 -0.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232275049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = 22.269736 kcal Electronic energy + Delta-G solvation = -20396.115626 eV Core-core repulsion = 17331.804592 eV Total energy + Delta-G solvation = -3064.311034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96935 -37.99126 -37.60871 -35.62562 -32.95583 -32.39944 -30.57587 -30.08218 -27.75902 -26.53321 -24.25947 -23.73395 -23.40032 -21.00507 -20.06169 -18.47737 -18.04889 -17.07808 -16.86876 -16.05351 -15.13579 -14.82368 -14.66617 -14.46755 -14.22792 -14.00729 -13.73646 -13.26916 -12.95117 -12.85287 -12.40777 -12.10208 -11.83653 -11.64497 -11.55274 -11.09775 -11.01538 -10.61942 -10.57437 -10.42502 -10.20672 -9.96022 -9.43079 -9.32935 -8.75116 -8.62628 -7.96458 -7.47022 -6.10161 -4.08279 0.42813 0.86363 2.01494 2.92012 3.23088 3.31437 3.31815 4.00701 4.12488 4.32506 4.36321 4.72569 4.75911 4.91079 4.95521 5.09375 5.17181 5.23373 5.36107 5.41302 5.55310 5.76349 5.87073 5.99513 6.07004 6.07389 6.16344 6.19268 6.28444 6.47730 6.59017 6.69318 6.78874 6.81961 6.90589 7.49312 7.57642 7.78785 7.92851 7.98829 8.58632 8.98778 9.50718 11.02872 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.004846 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.993402 B = 5776.678664 C = 6352.689885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.083 3.917 13 C -0.041 4.041 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.119 3.881 17 O -0.483 6.483 18 C 0.102 3.898 19 N -0.472 5.472 20 C 0.127 3.873 21 C -0.182 4.182 22 C -0.032 4.032 23 C -0.073 4.073 24 H 0.013 0.987 25 H 0.081 0.919 26 H 0.050 0.950 27 H -0.010 1.010 28 H 0.024 0.976 29 H 0.264 0.736 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.386 0.614 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -16.056 9.548 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.248 5.248 3 C 0.036 3.964 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.045 4.045 13 C -0.042 4.042 14 C -0.128 4.128 15 C -0.145 4.145 16 C 0.073 3.927 17 O -0.292 6.292 18 C -0.020 4.020 19 N -0.180 5.180 20 C -0.045 4.045 21 C -0.202 4.202 22 C -0.058 4.058 23 C -0.076 4.076 24 H 0.031 0.969 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.241 0.759 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.100 -16.767 8.548 18.937 hybrid contribution 0.757 1.761 1.649 2.529 sum 2.857 -15.006 10.197 18.366 Atomic orbital electron populations 1.22288 0.87893 1.00263 1.00922 1.62012 1.07876 1.16312 1.38613 1.20222 0.94833 0.83845 0.97543 1.21005 1.35849 0.97225 1.00786 0.90085 1.24892 0.95780 0.97313 0.95246 1.69889 1.46719 1.13288 1.23849 0.86885 0.80872 0.79436 0.82685 1.20117 1.21159 1.19307 1.21126 1.00645 0.88984 0.93767 1.19770 0.94524 0.95502 0.94448 1.20636 0.97031 0.94609 1.00566 1.21051 1.00634 0.94181 0.98641 1.17847 0.93242 0.85168 0.96443 1.84804 1.68967 1.14894 1.60552 1.19197 0.95422 0.90240 0.97127 1.67973 1.05996 1.37492 1.06582 1.22938 0.92434 0.93838 0.95285 1.21930 1.02260 0.94913 1.01089 1.21678 0.91632 1.00529 0.91966 1.18546 0.97165 0.93272 0.98581 0.96854 0.90023 0.93157 0.99204 0.95840 0.92600 0.94283 0.90204 0.85403 0.84961 0.75867 0.82661 0.84499 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.09 60.06 0.55 1.20 16 2 N -0.52 -10.44 4.74 -245.81 -1.17 -11.61 16 3 C 0.16 3.73 3.79 -4.97 -0.02 3.71 16 4 C -0.51 -14.09 9.01 -34.44 -0.31 -14.40 16 5 H 0.08 2.46 7.37 -52.48 -0.39 2.08 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.87 20.84 27.47 -169.99 -4.67 16.18 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.08 1.32 4.37 -4.97 -0.02 1.30 16 13 C -0.04 -0.61 4.59 -104.53 -0.48 -1.09 16 14 C -0.11 -1.42 8.62 -39.96 -0.34 -1.76 16 15 C -0.12 -1.53 9.87 -39.82 -0.39 -1.92 16 16 C 0.12 1.65 6.71 -39.11 -0.26 1.39 16 17 O -0.48 -6.04 13.29 -19.23 -0.26 -6.30 16 18 C 0.10 1.59 6.62 -84.73 -0.56 1.03 16 19 N -0.47 -7.17 10.13 -10.88 -0.11 -7.28 16 20 C 0.13 1.61 11.15 -17.46 -0.19 1.42 16 21 C -0.18 -2.30 10.03 -39.77 -0.40 -2.70 16 22 C -0.03 -0.48 9.37 -39.22 -0.37 -0.84 16 23 C -0.07 -1.14 5.74 -106.81 -0.61 -1.75 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 26 H 0.05 0.87 6.65 -51.93 -0.35 0.52 16 27 H -0.01 -0.23 7.18 -51.93 -0.37 -0.60 16 28 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.04 0.59 7.96 -51.93 -0.41 0.17 16 31 H 0.08 1.21 6.80 -51.93 -0.35 0.86 16 32 H 0.13 1.42 8.00 -52.48 -0.42 1.00 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.39 2.95 9.06 45.56 0.41 3.36 16 35 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.15 2.22 6.68 -52.49 -0.35 1.87 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -32.79 309.22 -8.11 -40.89 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.82 Total: 2.30 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.52 Total: -12.54 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.50 Total: -45.19 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.26 Total: -6.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.79 -8.11 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232275049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.163 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds