Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46909 * 111.00060 * 2 1 4 4 C 1.50704 * 109.46971 * 293.95303 * 3 2 1 5 5 H 1.08003 * 119.99836 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99918 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99758 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00057 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47085 * 89.99871 * 8 6 4 10 10 H 1.48501 * 109.47106 * 210.00139 * 8 6 4 11 11 H 1.48504 * 109.46839 * 330.00056 * 8 6 4 12 12 C 1.46900 * 111.00035 * 123.94893 * 2 1 3 13 13 C 1.50706 * 109.46733 * 66.05093 * 12 2 1 14 14 C 1.36206 * 120.13487 * 259.99630 * 13 12 2 15 15 C 1.39196 * 120.94451 * 179.97438 * 14 13 12 16 16 C 1.36598 * 121.00113 * 0.02562 * 15 14 13 17 17 O 1.35836 * 120.18457 * 180.02562 * 16 15 14 18 18 C 1.41045 * 119.63771 * 359.97438 * 16 15 14 19 19 N 1.33597 * 121.08515 * 179.72589 * 18 16 15 20 20 C 1.31077 * 121.33328 * 179.72236 * 19 18 16 21 21 C 1.39341 * 121.73223 * 0.57732 * 20 19 18 22 22 C 1.36572 * 119.93378 * 359.70529 * 21 20 19 23 23 C 1.40411 * 120.13863 * 79.99869 * 13 12 2 24 24 H 1.09003 * 109.47252 * 296.04911 * 1 2 3 25 25 H 1.09005 * 109.46812 * 56.04624 * 1 2 3 26 26 H 1.08999 * 109.47166 * 176.04638 * 1 2 3 27 27 H 1.08999 * 109.46728 * 53.95274 * 3 2 1 28 28 H 1.09000 * 109.46943 * 173.95576 * 3 2 1 29 29 H 0.96998 * 120.00163 * 179.97438 * 7 6 4 30 30 H 1.08991 * 109.47287 * 306.05113 * 12 2 1 31 31 H 1.09005 * 109.46936 * 186.04597 * 12 2 1 32 32 H 1.08004 * 119.52402 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.49901 * 179.97438 * 15 14 13 34 34 H 0.96703 * 114.00117 * 269.98237 * 17 16 15 35 35 H 1.08003 * 119.13830 * 180.28830 * 20 19 18 36 36 H 1.08004 * 120.03410 * 179.73962 * 21 20 19 37 37 H 1.07993 * 120.92825 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 1.7135 3.9393 -2.6615 8 14 2.9987 4.2767 -0.2305 9 1 4.4513 4.0644 -0.4541 10 1 2.6903 5.7264 -0.3227 11 1 2.6271 3.7763 1.1174 12 6 1.9954 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 6 0.5795 -2.7452 1.6523 15 6 0.2332 -4.0861 1.5123 16 6 0.9437 -4.9142 0.6904 17 8 0.5908 -6.2200 0.5659 18 6 2.0451 -4.4057 -0.0291 19 7 2.7634 -5.1909 -0.8367 20 6 3.7846 -4.7222 -1.5117 21 6 4.1789 -3.3894 -1.4128 22 6 3.4911 -2.5337 -0.6005 23 6 2.3917 -3.0401 0.1185 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5611 1.9274 0.8309 28 1 3.0798 1.3444 0.1082 29 1 1.9874 4.8556 -2.8232 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6610 1.1756 32 1 0.0015 -2.1119 2.3090 33 1 -0.6095 -4.4780 2.0625 34 1 1.0231 -6.8066 1.2015 35 1 4.3377 -5.3876 -2.1581 36 1 5.0273 -3.0333 -1.9784 37 1 3.7830 -1.4978 -0.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232275049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -2.221144 kcal Electronic energy + Delta-G solvation = -20397.177631 eV Core-core repulsion = 17331.804592 eV Total energy + Delta-G solvation = -3065.373039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00037 -38.99878 -38.88643 -36.89769 -34.65623 -33.82582 -31.59542 -31.36306 -29.53473 -27.87987 -25.49053 -24.98022 -24.60022 -22.50211 -21.43024 -19.48477 -19.09969 -18.88496 -18.08247 -17.13226 -16.70173 -16.15742 -15.93599 -15.80686 -15.55472 -15.26107 -14.92428 -14.52688 -14.27510 -14.11508 -14.00609 -13.49526 -13.11600 -13.03341 -12.86635 -12.63415 -12.35074 -12.25572 -12.00285 -11.85594 -11.58001 -11.47177 -11.25742 -10.76989 -10.46294 -9.76132 -9.14122 -8.88763 -8.26635 -6.30543 -0.60308 -0.15206 0.95077 1.36734 1.38307 1.48536 1.92811 2.35684 2.98747 3.07117 3.12951 3.32109 3.44891 3.69384 3.84731 3.94586 4.04383 4.15339 4.31682 4.42444 4.49567 4.53295 4.61229 4.67139 4.82695 4.90585 4.98431 5.02264 5.10510 5.15322 5.18903 5.27885 5.48038 5.52048 5.63803 5.83657 5.97144 6.31315 6.63369 6.75279 6.76383 6.99124 7.33138 8.90161 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.004846 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.993402 B = 5776.678664 C = 6352.689885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.515 4.515 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.248 1.248 12 C 0.089 3.911 13 C -0.062 4.062 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.113 3.887 17 O -0.493 6.493 18 C 0.076 3.924 19 N -0.493 5.493 20 C 0.124 3.876 21 C -0.175 4.175 22 C -0.057 4.057 23 C -0.088 4.088 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.066 0.934 27 H -0.007 1.007 28 H 0.034 0.966 29 H 0.266 0.734 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.406 0.594 35 H 0.190 0.810 36 H 0.164 0.836 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -17.030 11.743 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.264 5.264 3 C 0.045 3.955 4 C -0.554 4.554 5 H 0.052 0.948 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.171 1.171 12 C -0.039 4.039 13 C -0.064 4.064 14 C -0.118 4.118 15 C -0.141 4.141 16 C 0.067 3.933 17 O -0.305 6.305 18 C -0.046 4.046 19 N -0.202 5.202 20 C -0.048 4.048 21 C -0.195 4.195 22 C -0.083 4.083 23 C -0.090 4.090 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.010 0.990 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.168 0.832 33 H 0.179 0.821 34 H 0.265 0.735 35 H 0.207 0.793 36 H 0.181 0.819 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.793 -17.784 10.771 20.978 hybrid contribution 0.499 1.902 0.884 2.156 sum 3.291 -15.882 11.655 19.973 Atomic orbital electron populations 1.22161 0.87622 1.00746 1.00038 1.61848 1.08294 1.14752 1.41540 1.19973 0.95379 0.85382 0.94764 1.21243 1.34861 0.97462 1.01784 0.94787 1.25853 0.97039 0.98402 0.97638 1.70060 1.48688 1.13877 1.26481 0.85707 0.79447 0.77514 0.80206 1.18839 1.21134 1.17125 1.21105 1.00934 0.89157 0.92669 1.19703 0.95912 0.94783 0.95978 1.20917 0.96004 0.95158 0.99701 1.21311 1.00949 0.93639 0.98174 1.18048 0.92954 0.85929 0.96376 1.84743 1.69270 1.14769 1.61685 1.19524 0.96469 0.90499 0.98061 1.68007 1.06907 1.37996 1.07255 1.23529 0.91894 0.94430 0.94944 1.22253 1.02385 0.94722 1.00137 1.21756 0.92541 1.00602 0.93381 1.18714 0.97624 0.93633 0.99030 0.95309 0.93627 0.91506 0.98967 0.94802 0.92493 0.92624 0.89699 0.83219 0.82061 0.73532 0.79273 0.81890 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.09 127.69 1.16 2.76 16 2 N -0.54 -21.25 4.74 -931.61 -4.42 -25.67 16 3 C 0.17 7.81 3.79 85.56 0.32 8.14 16 4 C -0.52 -29.17 9.01 25.60 0.23 -28.94 16 5 H 0.03 2.19 7.37 -2.91 -0.02 2.16 16 6 C 0.01 0.44 5.47 84.65 0.46 0.91 16 7 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 8 Si 0.95 42.64 27.47 68.60 1.88 44.52 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 12 C 0.09 2.68 4.37 85.56 0.37 3.06 16 13 C -0.06 -1.77 4.59 -19.81 -0.09 -1.86 16 14 C -0.10 -2.31 8.62 22.03 0.19 -2.12 16 15 C -0.12 -2.65 9.87 22.12 0.22 -2.43 16 16 C 0.11 2.96 6.71 22.57 0.15 3.11 16 17 O -0.49 -11.45 13.29 -91.71 -1.22 -12.67 16 18 C 0.08 2.30 6.62 40.41 0.27 2.57 16 19 N -0.49 -14.47 10.13 -188.34 -1.91 -16.38 16 20 C 0.12 2.96 11.15 85.07 0.95 3.91 16 21 C -0.18 -4.23 10.03 22.15 0.22 -4.00 16 22 C -0.06 -1.66 9.37 22.50 0.21 -1.45 16 23 C -0.09 -2.67 5.74 -21.28 -0.12 -2.79 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 2.01 6.76 -2.38 -0.02 2.00 16 26 H 0.07 2.25 6.65 -2.39 -0.02 2.23 16 27 H -0.01 -0.33 7.18 -2.39 -0.02 -0.35 16 28 H 0.03 1.48 7.36 -2.39 -0.02 1.46 16 29 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.06 1.50 7.96 -2.39 -0.02 1.49 16 31 H 0.08 2.45 6.80 -2.38 -0.02 2.44 16 32 H 0.15 2.78 8.00 -2.91 -0.02 2.76 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.41 5.44 9.06 -74.06 -0.67 4.77 16 35 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.14 4.21 6.68 -2.91 -0.02 4.19 16 Total: -1.00 -72.69 309.22 -0.45 -73.14 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.37 Total: 14.87 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.55 Total: -19.14 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.03 Total: -100.72 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.22 Total: -12.67 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -72.69 -0.45 -73.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232275049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.915 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds