Wall clock time and date at job start Mon Mar 30 2020 01:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00059 * 2 1 4 4 C 1.50696 * 109.47173 * 66.04696 * 3 2 1 5 5 H 1.07998 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99961 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00223 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99820 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47211 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46934 * 119.99758 * 8 6 4 11 11 H 1.48501 * 109.46782 * 239.99858 * 8 6 4 12 12 C 1.46899 * 110.99651 * 236.04580 * 2 1 3 13 13 C 1.50698 * 109.47464 * 288.00354 * 12 2 1 14 14 C 1.36075 * 120.59762 * 105.25350 * 13 12 2 15 15 N 1.32650 * 121.96205 * 179.70209 * 14 13 12 16 16 C 1.31768 * 122.68010 * 0.27420 * 15 14 13 17 17 O 1.35492 * 120.12348 * 180.02562 * 16 15 14 18 18 C 1.41059 * 119.74831 * 359.97438 * 16 15 14 19 19 C 1.40167 * 122.06952 * 180.02562 * 18 16 15 20 20 C 1.36257 * 119.52991 * 179.97438 * 19 18 16 21 21 C 1.39303 * 121.06162 * 0.02562 * 20 19 18 22 22 C 1.36270 * 120.98110 * 359.95499 * 21 20 19 23 23 C 1.40193 * 119.47863 * 0.04115 * 22 21 20 24 24 H 1.09006 * 109.46863 * 186.08884 * 1 2 3 25 25 H 1.09002 * 109.46975 * 306.08055 * 1 2 3 26 26 H 1.09001 * 109.47569 * 66.08399 * 1 2 3 27 27 H 1.08996 * 109.47108 * 186.05133 * 3 2 1 28 28 H 1.09006 * 109.47037 * 306.05118 * 3 2 1 29 29 H 0.97002 * 120.00249 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47057 * 168.00191 * 12 2 1 31 31 H 1.09002 * 109.46932 * 48.00580 * 12 2 1 32 32 H 1.08006 * 119.01659 * 359.97438 * 14 13 12 33 33 H 0.96696 * 113.99993 * 90.00260 * 17 16 15 34 34 H 1.07999 * 120.23177 * 359.96731 * 19 18 16 35 35 H 1.08001 * 119.46766 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.51463 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.25912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0487 6 6 2.0269 3.3495 1.5284 7 7 2.7111 4.0022 0.6145 8 14 1.5831 4.1868 3.1383 9 1 0.8158 3.2441 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7551 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1376 13 6 1.7654 -2.2367 -0.9025 14 6 0.7901 -2.9021 -1.5790 15 7 0.5682 -4.1972 -1.3976 16 6 1.2668 -4.9271 -0.5517 17 8 0.9960 -6.2469 -0.4077 18 6 2.2982 -4.3296 0.2024 19 6 3.0717 -5.0598 1.1151 20 6 4.0558 -4.4301 1.8163 21 6 4.3059 -3.0709 1.6414 22 6 3.5738 -2.3304 0.7624 23 6 2.5533 -2.9461 0.0241 24 1 -0.3633 -1.0219 0.1090 25 1 -0.3633 0.6052 0.8306 26 1 -0.3634 0.4166 -0.9394 27 1 3.0797 1.3444 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 3.0640 -0.5771 -1.2395 31 1 1.4836 -0.4595 -2.0499 32 1 0.1815 -2.3604 -2.2881 33 1 1.4959 -6.8185 -1.0064 34 1 2.8889 -6.1141 1.2616 35 1 4.6515 -4.9939 2.5190 36 1 5.0919 -2.5970 2.2105 37 1 3.7780 -1.2775 0.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233964013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:14 Heat of formation + Delta-G solvation = 19.179968 kcal Electronic energy + Delta-G solvation = -20384.222879 eV Core-core repulsion = 17319.777862 eV Total energy + Delta-G solvation = -3064.445017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97407 -37.91136 -37.30252 -36.12467 -32.96955 -31.98910 -31.02693 -29.70561 -27.20197 -26.61361 -24.26306 -23.55410 -23.25152 -21.31809 -20.16460 -18.83025 -17.74796 -17.21179 -16.45002 -15.84310 -15.16415 -14.89930 -14.67383 -14.38001 -14.19276 -13.69291 -13.62103 -13.25332 -12.95771 -12.40255 -11.98891 -11.93274 -11.92396 -11.61879 -11.47043 -11.14475 -10.99581 -10.92505 -10.69932 -10.49815 -9.97424 -9.72897 -9.36723 -9.20285 -8.99402 -8.49354 -7.81596 -7.33365 -6.07842 -4.09137 0.42883 0.98406 1.97708 3.08579 3.28042 3.35927 3.41041 3.58148 4.09496 4.39683 4.65294 4.71544 4.82137 5.00574 5.04156 5.17877 5.28163 5.31256 5.42361 5.55447 5.65086 5.82989 5.98970 6.03604 6.13094 6.16575 6.18876 6.29794 6.49740 6.61567 6.66801 6.73398 6.95535 7.18334 7.26666 7.43474 7.73815 7.98117 8.00832 8.11238 8.46293 8.98968 9.55576 11.02927 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023916 B = 0.004802 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.479719 B = 5829.777567 C = 6453.589855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.533 5.533 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.092 3.908 13 C -0.093 4.093 14 C 0.087 3.913 15 N -0.502 5.502 16 C 0.331 3.669 17 O -0.477 6.477 18 C -0.118 4.118 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.079 4.079 23 C 0.000 4.000 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.013 0.987 27 H 0.030 0.970 28 H -0.007 1.007 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.153 0.847 33 H 0.397 0.603 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -16.943 -2.535 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.037 4.037 13 C -0.095 4.095 14 C -0.057 4.057 15 N -0.220 5.220 16 C 0.138 3.862 17 O -0.284 6.284 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.005 4.005 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.170 0.830 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.676 -17.114 -2.223 17.339 hybrid contribution 0.373 1.152 0.264 1.239 sum 2.049 -15.962 -1.960 16.212 Atomic orbital electron populations 1.22242 0.88561 0.99828 1.00559 1.62146 1.07311 1.17686 1.38623 1.19780 0.95311 0.81270 0.96881 1.21176 1.34851 0.96876 1.01616 0.91783 1.24972 0.95260 0.97309 0.96961 1.69958 1.38415 1.11433 1.33988 0.86461 0.78188 0.79353 0.83561 1.19655 1.20987 1.21099 1.20960 1.01104 0.88000 0.93665 1.20782 0.95920 0.97273 0.95559 1.21734 0.96310 0.88384 0.99276 1.66885 1.27698 1.08561 1.18902 1.19204 0.89929 0.85213 0.91838 1.84714 1.68975 1.12794 1.61914 1.18932 0.97790 0.94481 1.00902 1.20795 0.95249 0.99869 0.95660 1.20919 0.97979 0.95010 0.99504 1.21042 0.99733 0.93938 0.98115 1.21239 0.93117 1.00887 0.94462 1.17942 0.95645 0.91311 0.95573 0.93807 0.90477 0.96817 0.95166 0.98934 0.92943 0.89990 0.94178 0.83010 0.74584 0.85215 0.85890 0.85523 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.23 60.07 0.55 1.27 16 2 N -0.53 -11.01 4.61 -245.82 -1.13 -12.14 16 3 C 0.19 4.77 4.71 -4.98 -0.02 4.75 16 4 C -0.51 -13.81 8.43 -34.44 -0.29 -14.10 16 5 H 0.06 1.76 7.14 -52.49 -0.37 1.38 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.09 1.57 4.32 -4.98 -0.02 1.54 16 13 C -0.09 -1.48 4.69 -104.43 -0.49 -1.97 16 14 C 0.09 1.32 10.34 -17.98 -0.19 1.14 16 15 N -0.50 -7.90 10.33 -13.25 -0.14 -8.03 16 16 C 0.33 4.77 7.82 -16.51 -0.13 4.64 16 17 O -0.48 -5.53 12.86 -18.17 -0.23 -5.77 16 18 C -0.12 -1.70 5.75 -106.74 -0.61 -2.32 16 19 C -0.10 -1.15 9.59 -39.57 -0.38 -1.53 16 20 C -0.12 -1.32 9.95 -39.90 -0.40 -1.71 16 21 C -0.11 -1.40 9.95 -39.89 -0.40 -1.80 16 22 C -0.08 -1.21 9.35 -39.56 -0.37 -1.58 16 23 C 0.00 0.01 5.75 -106.83 -0.61 -0.61 16 24 H 0.04 0.79 7.25 -51.93 -0.38 0.41 16 25 H 0.08 1.62 6.71 -51.93 -0.35 1.28 16 26 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 27 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 28 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.08 1.37 7.09 -51.93 -0.37 1.00 16 31 H 0.04 0.65 7.79 -51.93 -0.40 0.24 16 32 H 0.15 2.03 7.96 -52.48 -0.42 1.62 16 33 H 0.40 2.45 9.06 45.56 0.41 2.86 16 34 H 0.13 1.24 7.68 -52.49 -0.40 0.84 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 2.39 6.83 -52.49 -0.36 2.03 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -31.59 313.27 -8.39 -39.98 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.87 Total: 1.04 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.45 Total: -10.80 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.53 Total: -45.46 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.23 Total: -5.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.59 -8.39 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233964013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.163 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds