Wall clock time and date at job start Mon Mar 30 2020 01:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00059 * 2 1 4 4 C 1.50696 * 109.47173 * 66.04696 * 3 2 1 5 5 H 1.07998 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99961 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00223 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99820 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47211 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46934 * 119.99758 * 8 6 4 11 11 H 1.48501 * 109.46782 * 239.99858 * 8 6 4 12 12 C 1.46899 * 110.99651 * 236.04580 * 2 1 3 13 13 C 1.50698 * 109.47464 * 288.00354 * 12 2 1 14 14 C 1.36075 * 120.59762 * 105.25350 * 13 12 2 15 15 N 1.32650 * 121.96205 * 179.70209 * 14 13 12 16 16 C 1.31768 * 122.68010 * 0.27420 * 15 14 13 17 17 O 1.35492 * 120.12348 * 180.02562 * 16 15 14 18 18 C 1.41059 * 119.74831 * 359.97438 * 16 15 14 19 19 C 1.40167 * 122.06952 * 180.02562 * 18 16 15 20 20 C 1.36257 * 119.52991 * 179.97438 * 19 18 16 21 21 C 1.39303 * 121.06162 * 0.02562 * 20 19 18 22 22 C 1.36270 * 120.98110 * 359.95499 * 21 20 19 23 23 C 1.40193 * 119.47863 * 0.04115 * 22 21 20 24 24 H 1.09006 * 109.46863 * 186.08884 * 1 2 3 25 25 H 1.09002 * 109.46975 * 306.08055 * 1 2 3 26 26 H 1.09001 * 109.47569 * 66.08399 * 1 2 3 27 27 H 1.08996 * 109.47108 * 186.05133 * 3 2 1 28 28 H 1.09006 * 109.47037 * 306.05118 * 3 2 1 29 29 H 0.97002 * 120.00249 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47057 * 168.00191 * 12 2 1 31 31 H 1.09002 * 109.46932 * 48.00580 * 12 2 1 32 32 H 1.08006 * 119.01659 * 359.97438 * 14 13 12 33 33 H 0.96696 * 113.99993 * 90.00260 * 17 16 15 34 34 H 1.07999 * 120.23177 * 359.96731 * 19 18 16 35 35 H 1.08001 * 119.46766 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.51463 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.25912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0487 6 6 2.0269 3.3495 1.5284 7 7 2.7111 4.0022 0.6145 8 14 1.5831 4.1868 3.1383 9 1 0.8158 3.2441 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7551 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1376 13 6 1.7654 -2.2367 -0.9025 14 6 0.7901 -2.9021 -1.5790 15 7 0.5682 -4.1972 -1.3976 16 6 1.2668 -4.9271 -0.5517 17 8 0.9960 -6.2469 -0.4077 18 6 2.2982 -4.3296 0.2024 19 6 3.0717 -5.0598 1.1151 20 6 4.0558 -4.4301 1.8163 21 6 4.3059 -3.0709 1.6414 22 6 3.5738 -2.3304 0.7624 23 6 2.5533 -2.9461 0.0241 24 1 -0.3633 -1.0219 0.1090 25 1 -0.3633 0.6052 0.8306 26 1 -0.3634 0.4166 -0.9394 27 1 3.0797 1.3444 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 3.0640 -0.5771 -1.2395 31 1 1.4836 -0.4595 -2.0499 32 1 0.1815 -2.3604 -2.2881 33 1 1.4959 -6.8185 -1.0064 34 1 2.8889 -6.1141 1.2616 35 1 4.6515 -4.9939 2.5190 36 1 5.0919 -2.5970 2.2105 37 1 3.7780 -1.2775 0.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233964013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:14 Heat of formation + Delta-G solvation = -4.322684 kcal Electronic energy + Delta-G solvation = -20385.242031 eV Core-core repulsion = 17319.777862 eV Total energy + Delta-G solvation = -3065.464168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06012 -38.99525 -38.55184 -37.45056 -34.83250 -33.39188 -32.07498 -30.88682 -29.10514 -28.06478 -25.80373 -24.70694 -24.47584 -22.78382 -21.61078 -19.84705 -18.82920 -18.52082 -18.20956 -16.94139 -16.87824 -16.12416 -15.93167 -15.84790 -15.75211 -15.05320 -14.84172 -14.42409 -14.22432 -13.93949 -13.59810 -13.34354 -13.03983 -12.89351 -12.80612 -12.72385 -12.60762 -12.51355 -12.32557 -12.05001 -11.83303 -11.32460 -10.82899 -10.61829 -10.42738 -10.04656 -9.10626 -8.83927 -8.20300 -6.29564 -0.64124 -0.08736 0.91628 1.40362 1.41642 1.54550 2.03460 2.40393 2.58624 2.98690 3.12692 3.39598 3.59940 3.63831 3.81428 3.99346 4.16237 4.25200 4.26069 4.45234 4.48414 4.57192 4.66610 4.70342 4.78504 4.93798 5.05074 5.09668 5.18929 5.19523 5.28220 5.48298 5.56099 5.61925 5.65571 5.95302 6.03880 6.27764 6.57910 6.62861 6.86010 6.90957 7.39989 8.90527 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023916 B = 0.004802 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.479719 B = 5829.777567 C = 6453.589855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.538 5.538 3 C 0.209 3.791 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.099 3.901 13 C -0.113 4.113 14 C 0.090 3.910 15 N -0.526 5.526 16 C 0.344 3.656 17 O -0.477 6.477 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.099 4.099 22 C -0.113 4.113 23 C -0.013 4.013 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.020 0.980 27 H 0.010 0.990 28 H -0.034 1.034 29 H 0.264 0.736 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.165 0.835 33 H 0.422 0.578 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -19.162 -1.179 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.262 5.262 3 C 0.083 3.917 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.573 5.573 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.205 1.205 12 C -0.029 4.029 13 C -0.115 4.115 14 C -0.053 4.053 15 N -0.246 5.246 16 C 0.151 3.849 17 O -0.288 6.288 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.019 4.019 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.028 0.972 28 H -0.016 1.016 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.182 0.818 33 H 0.284 0.716 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.736 -19.372 -0.886 19.469 hybrid contribution 0.406 1.663 -0.157 1.719 sum 2.142 -17.709 -1.042 17.868 Atomic orbital electron populations 1.22159 0.87804 1.00440 1.00072 1.62020 1.07987 1.15289 1.40909 1.19411 0.93932 0.83257 0.95075 1.21444 1.34723 0.97385 1.02292 0.92279 1.25814 0.95049 0.97976 1.00379 1.70071 1.39391 1.11877 1.35948 0.85406 0.78088 0.78210 0.79347 1.19100 1.20289 1.20515 1.20869 1.00681 0.88771 0.92611 1.20565 0.97439 0.96196 0.97319 1.21882 0.95874 0.88545 0.99025 1.66964 1.28776 1.08649 1.20165 1.19376 0.88864 0.86125 0.90535 1.84654 1.69569 1.11709 1.62846 1.19134 0.98647 0.94043 1.01980 1.21182 0.94225 1.01136 0.94139 1.21307 0.97914 0.94288 0.99639 1.21369 0.99006 0.94835 0.96631 1.21127 0.94934 1.00244 0.96764 1.18103 0.95778 0.92303 0.95669 0.92153 0.92369 0.96161 0.97158 1.01614 0.92681 0.90529 0.93358 0.81838 0.71578 0.82188 0.82123 0.83758 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 9.23 127.69 1.18 2.91 16 2 N -0.54 -23.00 4.61 -931.65 -4.29 -27.29 16 3 C 0.21 10.87 4.71 85.56 0.40 11.27 16 4 C -0.52 -29.08 8.43 25.60 0.22 -28.87 16 5 H 0.06 3.30 7.14 -2.91 -0.02 3.28 16 6 C 0.01 0.34 5.46 84.66 0.46 0.80 16 7 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 8 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.10 3.52 4.32 85.56 0.37 3.89 16 13 C -0.11 -3.64 4.69 -19.74 -0.09 -3.73 16 14 C 0.09 2.71 10.34 84.07 0.87 3.58 16 15 N -0.53 -15.91 10.33 -309.05 -3.19 -19.10 16 16 C 0.34 9.22 7.82 85.39 0.67 9.89 16 17 O -0.48 -9.57 12.86 -87.92 -1.13 -10.70 16 18 C -0.13 -3.65 5.75 -21.24 -0.12 -3.77 16 19 C -0.09 -1.80 9.59 22.28 0.21 -1.58 16 20 C -0.11 -2.18 9.95 22.06 0.22 -1.97 16 21 C -0.10 -2.39 9.95 22.07 0.22 -2.17 16 22 C -0.11 -3.48 9.35 22.29 0.21 -3.27 16 23 C -0.01 -0.42 5.75 -21.29 -0.12 -0.55 16 24 H 0.06 2.18 7.25 -2.38 -0.02 2.16 16 25 H 0.06 2.50 6.71 -2.39 -0.02 2.48 16 26 H 0.02 0.76 8.07 -2.39 -0.02 0.74 16 27 H 0.01 0.57 7.86 -2.39 -0.02 0.55 16 28 H -0.03 -1.90 8.12 -2.38 -0.02 -1.92 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.08 2.75 7.09 -2.39 -0.02 2.73 16 31 H 0.05 1.61 7.79 -2.39 -0.02 1.59 16 32 H 0.16 4.32 7.96 -2.91 -0.02 4.29 16 33 H 0.42 3.71 9.06 -74.06 -0.67 3.03 16 34 H 0.16 2.28 7.68 -2.91 -0.02 2.26 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.12 4.24 6.83 -2.91 -0.02 4.22 16 Total: -1.00 -68.71 313.27 -1.20 -69.90 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.42 Total: 9.58 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.69 Total: -13.57 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -7.20 Total: -101.25 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.13 Total: -10.70 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.71 -1.20 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233964013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.582 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds