Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00123 * 2 1 4 4 C 1.50693 * 109.46984 * 66.04611 * 3 2 1 5 5 C 1.35457 * 126.77739 * 90.00111 * 4 3 2 6 6 C 1.41381 * 103.98547 * 179.97438 * 5 4 3 7 7 N 1.30179 * 106.39491 * 359.97438 * 6 5 4 8 8 O 1.20917 * 111.60745 * 359.72474 * 7 6 5 9 9 C 1.46904 * 111.00247 * 236.04454 * 2 1 3 10 10 C 1.50699 * 109.47149 * 288.05857 * 9 2 1 11 11 C 1.37640 * 120.12595 * 265.27640 * 10 9 2 12 12 C 1.38616 * 120.24601 * 179.75197 * 11 10 9 13 13 C 1.38655 * 120.50311 * 0.24730 * 12 11 10 14 14 C 1.37603 * 120.24893 * 0.02959 * 13 12 11 15 15 C 1.40703 * 120.12860 * 85.54796 * 10 9 2 16 16 C 1.41397 * 120.24311 * 359.97438 * 15 10 9 17 17 H 1.08002 * 119.99794 * 232.13948 * 16 15 10 18 18 C 1.39942 * 120.00229 * 52.14171 * 16 15 10 19 19 N 1.30820 * 120.00369 * 203.54156 * 18 16 15 20 20 Si 1.86803 * 119.99602 * 23.54288 * 18 16 15 21 21 H 1.48503 * 109.47293 * 86.57663 * 20 18 16 22 22 H 1.48501 * 109.46801 * 206.57308 * 20 18 16 23 23 H 1.48492 * 109.47368 * 326.57032 * 20 18 16 24 24 H 1.09004 * 109.47170 * 191.06275 * 1 2 3 25 25 H 1.08996 * 109.47019 * 311.06317 * 1 2 3 26 26 H 1.09000 * 109.47126 * 71.06444 * 1 2 3 27 27 H 1.09000 * 109.46811 * 186.04604 * 3 2 1 28 28 H 1.09001 * 109.47239 * 306.04549 * 3 2 1 29 29 H 1.07999 * 128.00430 * 359.97438 * 5 4 3 30 30 H 1.08004 * 126.80296 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47571 * 168.05601 * 9 2 1 32 32 H 1.09005 * 109.46766 * 48.05235 * 9 2 1 33 33 H 1.07993 * 119.87727 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.74961 * 180.23768 * 12 11 10 35 35 H 1.08001 * 119.87876 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.12903 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00263 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2984 5 6 2.3696 2.0553 2.4377 6 6 1.5926 2.8196 3.3381 7 7 0.5237 3.1790 2.6877 8 8 0.5332 2.7642 1.5519 9 6 1.9955 -0.7660 -1.1376 10 6 1.7643 -2.2366 -0.9030 11 6 2.7540 -3.0104 -0.3406 12 6 2.5422 -4.3622 -0.1190 13 6 1.3358 -4.9515 -0.4649 14 6 0.3343 -4.1985 -1.0336 15 6 0.5381 -2.8251 -1.2633 16 6 -0.4839 -2.0411 -1.8465 17 1 -1.4802 -2.0562 -1.4299 18 6 -0.2046 -1.2458 -2.9635 19 7 -0.9518 -0.2054 -3.2292 20 14 1.2355 -1.6698 -4.0753 21 1 0.7968 -2.6493 -5.1017 22 1 1.7241 -0.4373 -4.7442 23 1 2.3303 -2.2599 -3.2640 24 1 -0.3634 -1.0086 0.1972 25 1 -0.3633 0.6750 0.7748 26 1 -0.3633 0.3335 -0.9720 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 3.3260 1.5866 2.6166 30 1 1.8372 3.0581 4.3627 31 1 3.0643 -0.5778 -1.2389 32 1 1.4843 -0.4589 -2.0501 33 1 3.6975 -2.5617 -0.0669 34 1 3.3230 -4.9610 0.3262 35 1 1.1814 -6.0056 -0.2874 36 1 -0.6049 -4.6594 -1.3019 37 1 -0.7579 0.3461 -4.0033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235525594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 103.194899 kcal Electronic energy + Delta-G solvation = -21075.234652 eV Core-core repulsion = 18014.432796 eV Total energy + Delta-G solvation = -3060.801856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.67680 -38.61159 -36.44180 -33.76393 -33.51079 -32.05687 -30.38193 -30.20127 -26.86754 -26.36868 -24.75081 -23.22933 -22.37738 -20.81455 -20.68736 -19.64257 -17.62026 -17.36451 -17.00056 -15.64312 -15.09845 -14.86591 -14.59523 -14.50245 -13.88781 -13.55373 -13.18350 -13.06380 -12.88263 -12.30708 -12.12338 -11.80697 -11.76640 -11.31212 -11.21605 -10.84730 -10.73481 -10.66303 -10.62380 -10.24878 -10.13203 -9.85681 -9.61713 -9.20582 -8.97334 -7.72992 -7.60069 -7.28614 -6.77383 -4.40068 1.67459 2.45207 2.54827 2.61372 3.06439 3.18329 3.26789 3.31917 4.01098 4.47367 4.53157 4.73941 4.81739 5.25327 5.30837 5.47483 5.56245 5.72020 5.82928 5.90159 5.95948 6.10521 6.14785 6.21338 6.23064 6.47983 6.50943 6.75452 6.83452 6.94434 7.21846 7.28776 7.39424 7.58571 7.63375 7.71023 7.73506 7.96853 8.09493 8.44956 8.45608 8.68704 8.88962 10.23162 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.006803 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.375757 B = 4114.569403 C = 4865.548408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.526 5.526 3 C 0.125 3.875 4 C 0.000 4.000 5 C -0.228 4.228 6 C -0.016 4.016 7 N -0.374 5.374 8 O 0.096 5.904 9 C 0.110 3.890 10 C -0.142 4.142 11 C -0.083 4.083 12 C -0.213 4.213 13 C -0.104 4.104 14 C -0.189 4.189 15 C 0.099 3.901 16 C -0.489 4.489 17 H 0.092 0.908 18 C 0.098 3.902 19 N -0.822 5.822 20 Si 0.860 3.140 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.234 1.234 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 2.910 4.947 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.004 4.004 4 C -0.065 4.065 5 C -0.251 4.251 6 C -0.194 4.194 7 N -0.077 5.077 8 O 0.031 5.969 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.102 4.102 12 C -0.232 4.232 13 C -0.122 4.122 14 C -0.208 4.208 15 C 0.096 3.904 16 C -0.520 4.520 17 H 0.109 0.891 18 C -0.116 4.116 19 N -0.450 5.450 20 Si 0.684 3.316 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.157 1.157 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.187 0.813 30 H 0.203 0.797 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.540 3.647 5.539 9.314 hybrid contribution 1.086 -0.230 -1.130 1.584 sum 7.626 3.417 4.409 9.448 Atomic orbital electron populations 1.22722 0.84953 1.03183 1.01454 1.62222 1.10452 1.08645 1.43798 1.20600 1.00592 0.90281 0.88974 1.24511 0.86908 0.95768 0.99277 1.22483 1.04159 1.05916 0.92522 1.24993 0.91740 1.00265 1.02417 1.73863 1.21971 1.19527 0.92381 1.84842 1.37592 1.50780 1.23721 1.21005 0.97415 0.91555 0.91679 1.19726 0.96810 0.93138 1.04645 1.20549 0.97512 0.93691 0.98432 1.20561 0.97839 0.95171 1.09600 1.20756 0.94308 0.97987 0.99151 1.21455 0.98918 0.94121 1.06336 1.17669 0.91485 0.90998 0.90207 1.18976 0.97865 1.22297 1.12900 0.89067 1.25625 0.96000 0.92075 0.97931 1.69731 1.38355 1.11097 1.25769 0.87105 0.84311 0.79187 0.80977 1.19924 1.20699 1.15717 0.89562 0.94783 0.91298 0.88226 0.92702 0.81321 0.79653 0.92508 0.92797 0.88669 0.88778 0.88785 0.87947 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 7.89 60.06 0.47 0.98 16 2 N -0.53 -10.02 4.70 -245.83 -1.16 -11.18 16 3 C 0.12 1.95 5.52 -4.98 -0.03 1.93 16 4 C 0.00 -0.01 6.05 -35.30 -0.21 -0.22 16 5 C -0.23 -3.08 11.09 -39.38 -0.44 -3.52 16 6 C -0.02 -0.21 12.17 -17.06 -0.21 -0.42 16 7 N -0.37 -6.16 12.07 30.36 0.37 -5.79 16 8 O 0.10 1.65 10.36 17.16 0.18 1.83 16 9 C 0.11 2.20 4.01 -4.97 -0.02 2.18 16 10 C -0.14 -3.09 3.45 -103.91 -0.36 -3.45 16 11 C -0.08 -1.68 9.66 -39.66 -0.38 -2.07 16 12 C -0.21 -4.17 10.05 -39.29 -0.39 -4.56 16 13 C -0.10 -2.07 10.02 -39.66 -0.40 -2.47 16 14 C -0.19 -4.18 9.80 -38.87 -0.38 -4.56 16 15 C 0.10 2.31 3.67 -106.82 -0.39 1.92 16 16 C -0.49 -12.10 5.86 -37.74 -0.22 -12.32 16 17 H 0.09 2.45 8.02 -52.49 -0.42 2.03 16 18 C 0.10 2.38 3.22 -17.34 -0.06 2.32 16 19 N -0.82 -20.52 12.86 55.55 0.71 -19.80 16 20 Si 0.86 19.05 25.16 -169.99 -4.28 14.78 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.23 -5.18 5.66 56.52 0.32 -4.86 16 24 H 0.09 2.01 5.74 -51.93 -0.30 1.71 16 25 H 0.03 0.69 6.35 -51.93 -0.33 0.36 16 26 H 0.07 1.59 5.61 -51.93 -0.29 1.30 16 27 H 0.10 1.29 7.86 -51.93 -0.41 0.88 16 28 H 0.05 0.88 8.12 -51.93 -0.42 0.45 16 29 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 32 H 0.05 1.17 2.96 -51.93 -0.15 1.02 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -26.29 296.52 -7.20 -33.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.48 Total: 6.45 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.02 Total: -24.25 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.07 Total: -36.77 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.18 Total: 1.83 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.28 Total: 14.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.29 -7.20 -33.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.686 kcal (2) G-P(sol) polarization free energy of solvation -26.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds