Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00123 * 2 1 4 4 C 1.50693 * 109.46984 * 66.04611 * 3 2 1 5 5 C 1.35457 * 126.77739 * 90.00111 * 4 3 2 6 6 C 1.41381 * 103.98547 * 179.97438 * 5 4 3 7 7 N 1.30179 * 106.39491 * 359.97438 * 6 5 4 8 8 O 1.20917 * 111.60745 * 359.72474 * 7 6 5 9 9 C 1.46904 * 111.00247 * 236.04454 * 2 1 3 10 10 C 1.50699 * 109.47149 * 288.05857 * 9 2 1 11 11 C 1.37640 * 120.12595 * 265.27640 * 10 9 2 12 12 C 1.38616 * 120.24601 * 179.75197 * 11 10 9 13 13 C 1.38655 * 120.50311 * 0.24730 * 12 11 10 14 14 C 1.37603 * 120.24893 * 0.02959 * 13 12 11 15 15 C 1.40703 * 120.12860 * 85.54796 * 10 9 2 16 16 C 1.41397 * 120.24311 * 359.97438 * 15 10 9 17 17 H 1.08002 * 119.99794 * 232.13948 * 16 15 10 18 18 C 1.39942 * 120.00229 * 52.14171 * 16 15 10 19 19 N 1.30820 * 120.00369 * 203.54156 * 18 16 15 20 20 Si 1.86803 * 119.99602 * 23.54288 * 18 16 15 21 21 H 1.48503 * 109.47293 * 86.57663 * 20 18 16 22 22 H 1.48501 * 109.46801 * 206.57308 * 20 18 16 23 23 H 1.48492 * 109.47368 * 326.57032 * 20 18 16 24 24 H 1.09004 * 109.47170 * 191.06275 * 1 2 3 25 25 H 1.08996 * 109.47019 * 311.06317 * 1 2 3 26 26 H 1.09000 * 109.47126 * 71.06444 * 1 2 3 27 27 H 1.09000 * 109.46811 * 186.04604 * 3 2 1 28 28 H 1.09001 * 109.47239 * 306.04549 * 3 2 1 29 29 H 1.07999 * 128.00430 * 359.97438 * 5 4 3 30 30 H 1.08004 * 126.80296 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47571 * 168.05601 * 9 2 1 32 32 H 1.09005 * 109.46766 * 48.05235 * 9 2 1 33 33 H 1.07993 * 119.87727 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.74961 * 180.23768 * 12 11 10 35 35 H 1.08001 * 119.87876 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.12903 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00263 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2984 5 6 2.3696 2.0553 2.4377 6 6 1.5926 2.8196 3.3381 7 7 0.5237 3.1790 2.6877 8 8 0.5332 2.7642 1.5519 9 6 1.9955 -0.7660 -1.1376 10 6 1.7643 -2.2366 -0.9030 11 6 2.7540 -3.0104 -0.3406 12 6 2.5422 -4.3622 -0.1190 13 6 1.3358 -4.9515 -0.4649 14 6 0.3343 -4.1985 -1.0336 15 6 0.5381 -2.8251 -1.2633 16 6 -0.4839 -2.0411 -1.8465 17 1 -1.4802 -2.0562 -1.4299 18 6 -0.2046 -1.2458 -2.9635 19 7 -0.9518 -0.2054 -3.2292 20 14 1.2355 -1.6698 -4.0753 21 1 0.7968 -2.6493 -5.1017 22 1 1.7241 -0.4373 -4.7442 23 1 2.3303 -2.2599 -3.2640 24 1 -0.3634 -1.0086 0.1972 25 1 -0.3633 0.6750 0.7748 26 1 -0.3633 0.3335 -0.9720 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 3.3260 1.5866 2.6166 30 1 1.8372 3.0581 4.3627 31 1 3.0643 -0.5778 -1.2389 32 1 1.4843 -0.4589 -2.0501 33 1 3.6975 -2.5617 -0.0669 34 1 3.3230 -4.9610 0.3262 35 1 1.1814 -6.0056 -0.2874 36 1 -0.6049 -4.6594 -1.3019 37 1 -0.7579 0.3461 -4.0033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235525594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 87.424231 kcal Electronic energy + Delta-G solvation = -21075.918520 eV Core-core repulsion = 18014.432796 eV Total energy + Delta-G solvation = -3061.485723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.80897 -40.22723 -37.93881 -35.39344 -34.74016 -33.40942 -32.05488 -31.73197 -28.41756 -27.83338 -26.47458 -24.33219 -23.83333 -22.36515 -22.02178 -21.25618 -19.39902 -18.56040 -18.19761 -17.29075 -16.52037 -16.34051 -16.05275 -15.93287 -15.43936 -15.12098 -14.75654 -14.46670 -14.23835 -13.78904 -13.70842 -13.34886 -13.24323 -12.98247 -12.71427 -12.48143 -12.34864 -12.24856 -12.07752 -11.85095 -11.48220 -11.37114 -11.28446 -10.78919 -10.38211 -9.33976 -9.20015 -8.97397 -8.58896 -6.27204 0.49319 0.88304 0.95727 1.30470 1.41017 1.44287 1.48770 2.18027 2.21259 2.75157 3.22218 3.54395 3.62070 3.67378 4.14511 4.21199 4.29442 4.41616 4.44986 4.57363 4.59631 4.67515 4.73252 4.81269 4.88231 4.93637 5.08542 5.14724 5.23587 5.26500 5.48461 5.60139 5.70977 5.93932 6.01284 6.09306 6.16187 6.23452 6.44909 6.60517 6.93392 7.04564 7.30990 8.44667 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.006803 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.375757 B = 4114.569403 C = 4865.548408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.524 5.524 3 C 0.126 3.874 4 C -0.022 4.022 5 C -0.213 4.213 6 C -0.005 4.005 7 N -0.405 5.405 8 O 0.062 5.938 9 C 0.106 3.894 10 C -0.148 4.148 11 C -0.091 4.091 12 C -0.200 4.200 13 C -0.107 4.107 14 C -0.209 4.209 15 C 0.074 3.926 16 C -0.501 4.501 17 H 0.048 0.952 18 C 0.073 3.927 19 N -0.859 5.859 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.270 1.270 23 H -0.228 1.228 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.137 0.863 28 H 0.046 0.954 29 H 0.201 0.799 30 H 0.224 0.776 31 H 0.089 0.911 32 H 0.035 0.965 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.401 2.211 6.444 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.248 5.248 3 C -0.003 4.003 4 C -0.086 4.086 5 C -0.235 4.235 6 C -0.183 4.183 7 N -0.113 5.113 8 O 0.001 5.999 9 C -0.020 4.020 10 C -0.149 4.149 11 C -0.109 4.109 12 C -0.218 4.218 13 C -0.125 4.125 14 C -0.228 4.228 15 C 0.072 3.928 16 C -0.533 4.533 17 H 0.066 0.934 18 C -0.138 4.138 19 N -0.489 5.489 20 Si 0.728 3.272 21 H -0.210 1.210 22 H -0.195 1.195 23 H -0.150 1.150 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.154 0.846 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.241 0.759 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.368 2.934 7.016 12.858 hybrid contribution -0.040 -0.114 -1.407 1.412 sum 10.327 2.821 5.609 12.086 Atomic orbital electron populations 1.22323 0.86974 1.01036 0.99919 1.62158 1.08524 1.10870 1.43249 1.20723 1.02394 0.88076 0.89068 1.24644 0.87305 0.96630 1.00039 1.22918 1.04721 1.04649 0.91194 1.25686 0.90364 0.98504 1.03734 1.73873 1.23804 1.21070 0.92562 1.84811 1.38766 1.51938 1.24395 1.21050 0.98985 0.90851 0.91162 1.19992 0.96357 0.94323 1.04235 1.20951 0.98266 0.94061 0.97666 1.21066 0.98119 0.95310 1.07355 1.21096 0.93845 0.99413 0.98172 1.21629 0.99719 0.94238 1.07188 1.17778 0.92274 0.91539 0.91250 1.18750 0.96568 1.24044 1.13932 0.93419 1.26051 0.97708 0.91718 0.98295 1.69789 1.40274 1.12237 1.26564 0.86424 0.82388 0.79009 0.79352 1.21046 1.19470 1.15003 0.92489 0.94708 0.93806 0.84558 0.93620 0.78197 0.75943 0.89258 0.94728 0.85477 0.85159 0.85770 0.88505 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.01 7.89 127.69 1.01 3.02 16 2 N -0.52 -19.43 4.70 -931.66 -4.38 -23.81 16 3 C 0.13 3.74 5.52 85.56 0.47 4.21 16 4 C -0.02 -0.67 6.05 25.04 0.15 -0.52 16 5 C -0.21 -5.03 11.09 22.40 0.25 -4.79 16 6 C 0.00 -0.11 12.17 85.71 1.04 0.93 16 7 N -0.40 -13.03 12.07 -59.25 -0.72 -13.75 16 8 O 0.06 2.13 10.36 71.57 0.74 2.88 16 9 C 0.11 4.08 4.01 85.56 0.34 4.42 16 10 C -0.15 -6.19 3.45 -19.40 -0.07 -6.25 16 11 C -0.09 -3.31 9.66 22.22 0.21 -3.10 16 12 C -0.20 -6.93 10.05 22.46 0.23 -6.70 16 13 C -0.11 -3.98 10.02 22.22 0.22 -3.76 16 14 C -0.21 -9.19 9.80 22.73 0.22 -8.97 16 15 C 0.07 3.49 3.67 -21.29 -0.08 3.41 16 16 C -0.50 -26.18 5.86 23.46 0.14 -26.04 16 17 H 0.05 2.82 8.02 -2.91 -0.02 2.79 16 18 C 0.07 3.69 3.22 85.26 0.27 3.96 16 19 N -0.86 -45.21 12.86 21.83 0.28 -44.93 16 20 Si 0.91 39.52 25.16 68.60 1.73 41.24 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.23 -9.55 5.66 99.48 0.56 -8.99 16 24 H 0.06 2.81 5.74 -2.38 -0.01 2.80 16 25 H 0.03 1.48 6.35 -2.39 -0.02 1.46 16 26 H 0.04 2.15 5.61 -2.39 -0.01 2.14 16 27 H 0.14 3.01 7.86 -2.39 -0.02 2.99 16 28 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 29 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.22 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.09 2.81 7.72 -2.39 -0.02 2.80 16 32 H 0.03 1.50 2.96 -2.38 -0.01 1.49 16 33 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -60.00 296.52 3.01 -56.99 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.94 Total: 21.55 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 4.42 Total: -40.17 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -4.81 Total: -82.49 kcal Atomic # 8 Polarization: 2.13 SS G_CDS: 0.74 Total: 2.88 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.73 Total: 41.24 kcal Total: -60.00 3.01 -56.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.414 kcal (2) G-P(sol) polarization free energy of solvation -60.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds