Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00009 * 2 1 4 4 C 1.50701 * 109.46902 * 66.04308 * 3 2 1 5 5 C 1.41374 * 126.79958 * 95.00325 * 4 3 2 6 6 C 1.35455 * 103.98944 * 179.97438 * 5 4 3 7 7 O 1.34045 * 106.44137 * 359.97438 * 6 5 4 8 8 N 1.20923 * 111.56495 * 359.71349 * 7 6 5 9 9 C 1.46894 * 111.00132 * 236.04498 * 2 1 3 10 10 C 1.50704 * 109.46965 * 288.00854 * 9 2 1 11 11 C 1.37642 * 120.12583 * 265.29613 * 10 9 2 12 12 C 1.38607 * 120.24786 * 179.75151 * 11 10 9 13 13 C 1.38664 * 120.50344 * 0.25039 * 12 11 10 14 14 C 1.37597 * 120.24518 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.13168 * 85.56928 * 10 9 2 16 16 C 1.41402 * 120.24241 * 359.97438 * 15 10 9 17 17 H 1.07998 * 119.99895 * 232.17702 * 16 15 10 18 18 C 1.39946 * 119.99754 * 52.17613 * 16 15 10 19 19 N 1.30822 * 119.99872 * 203.49287 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 23.50388 * 18 16 15 21 21 H 1.48496 * 109.47629 * 86.56270 * 20 18 16 22 22 H 1.48506 * 109.46796 * 206.56771 * 20 18 16 23 23 H 1.48510 * 109.47077 * 326.56134 * 20 18 16 24 24 H 1.09001 * 109.47350 * 190.82869 * 1 2 3 25 25 H 1.09004 * 109.47300 * 310.82747 * 1 2 3 26 26 H 1.08999 * 109.46892 * 70.82421 * 1 2 3 27 27 H 1.08998 * 109.46838 * 186.04525 * 3 2 1 28 28 H 1.08994 * 109.46820 * 306.04695 * 3 2 1 29 29 H 1.08010 * 128.01103 * 0.03295 * 5 4 3 30 30 H 1.08002 * 126.77831 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.47298 * 168.00727 * 9 2 1 32 32 H 1.09005 * 109.47302 * 48.00488 * 9 2 1 33 33 H 1.08002 * 119.87475 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.75373 * 180.23142 * 12 11 10 35 35 H 1.07998 * 119.87666 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.12336 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4433 2.1396 2.4559 6 6 1.6788 2.8332 3.3331 7 8 0.5284 3.1053 2.7012 8 7 0.5260 2.6673 1.5741 9 6 1.9955 -0.7660 -1.1375 10 6 1.7654 -2.2367 -0.9023 11 6 2.7557 -3.0095 -0.3398 12 6 2.5450 -4.3614 -0.1176 13 6 1.3388 -4.9518 -0.4632 14 6 0.3368 -4.1996 -1.0320 15 6 0.5396 -2.8262 -1.2622 16 6 -0.4831 -2.0432 -1.8456 17 1 -1.4792 -2.0583 -1.4285 18 6 -0.2045 -1.2487 -2.9635 19 7 -0.9530 -0.2094 -3.2302 20 14 1.2359 -1.6723 -4.0749 21 1 0.7984 -2.6534 -5.1002 22 1 1.7231 -0.4399 -4.7451 23 1 2.3315 -2.2603 -3.2629 24 1 -0.3634 -1.0094 0.1931 25 1 -0.3634 0.6719 0.7776 26 1 -0.3633 0.3376 -0.9706 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 3.4389 1.7487 2.6059 30 1 1.9439 3.1119 4.3423 31 1 3.0641 -0.5771 -1.2393 32 1 1.4838 -0.4595 -2.0499 33 1 3.6989 -2.5600 -0.0664 34 1 3.3262 -4.9595 0.3277 35 1 1.1854 -6.0059 -0.2852 36 1 -0.6020 -4.6615 -1.2999 37 1 -0.7596 0.3415 -4.0049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235526925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = 105.177831 kcal Electronic energy + Delta-G solvation = -21042.365158 eV Core-core repulsion = 17981.649288 eV Total energy + Delta-G solvation = -3060.715870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.70365 -38.56566 -36.49073 -33.96751 -33.17683 -31.50318 -30.51713 -30.23528 -27.13970 -26.44783 -24.72155 -23.05216 -22.23741 -20.65487 -20.48551 -19.57651 -17.57512 -17.49862 -17.34910 -15.58721 -15.18418 -14.84389 -14.56673 -14.36414 -13.82935 -13.54812 -13.19075 -13.02428 -12.86184 -12.11741 -11.97897 -11.78656 -11.67702 -11.26794 -11.21452 -10.75894 -10.69652 -10.59971 -10.54079 -10.10515 -9.96737 -9.75324 -9.54791 -9.41853 -8.93519 -7.68708 -7.51815 -7.23786 -6.73305 -4.36091 1.70869 2.40555 2.59947 2.66318 3.09227 3.20476 3.29313 3.46480 4.04406 4.39539 4.54583 4.75364 4.94627 5.33156 5.34534 5.49874 5.59954 5.78807 5.86188 5.94744 6.02991 6.15884 6.18114 6.22696 6.30353 6.55362 6.60814 6.78973 6.89883 7.01233 7.26544 7.35698 7.44731 7.62449 7.67725 7.81467 7.84449 8.01183 8.13339 8.48950 8.53073 8.72328 8.92755 10.26990 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.006754 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.716209 B = 4144.732151 C = 4885.997028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.525 5.525 3 C 0.124 3.876 4 C 0.037 3.963 5 C -0.218 4.218 6 C -0.075 4.075 7 O 0.095 5.905 8 N -0.357 5.357 9 C 0.110 3.890 10 C -0.140 4.140 11 C -0.084 4.084 12 C -0.213 4.213 13 C -0.104 4.104 14 C -0.190 4.190 15 C 0.099 3.901 16 C -0.489 4.489 17 H 0.091 0.909 18 C 0.098 3.902 19 N -0.822 5.822 20 Si 0.861 3.139 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.234 1.234 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.168 0.832 30 H 0.212 0.788 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 4.221 7.624 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.004 4.004 4 C -0.123 4.123 5 C -0.240 4.240 6 C -0.157 4.157 7 O 0.028 5.972 8 N -0.062 5.062 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.103 4.103 12 C -0.232 4.232 13 C -0.123 4.123 14 C -0.209 4.209 15 C 0.096 3.904 16 C -0.520 4.520 17 H 0.109 0.891 18 C -0.116 4.116 19 N -0.449 5.449 20 Si 0.685 3.315 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.157 1.157 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.186 0.814 30 H 0.228 0.772 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.550 4.481 7.206 10.719 hybrid contribution 1.177 -0.076 -0.948 1.513 sum 7.727 4.405 6.258 10.875 Atomic orbital electron populations 1.22693 0.85097 1.02877 1.01533 1.62150 1.10361 1.09069 1.43459 1.20398 1.00016 0.90214 0.89809 1.23554 0.90413 0.99346 0.98943 1.22689 1.03238 1.04815 0.93229 1.25921 0.86703 1.02155 1.00875 1.84842 1.34793 1.58322 1.19207 1.73907 1.21713 1.13855 0.96686 1.20991 0.97276 0.91548 0.91868 1.19753 0.96756 0.93217 1.04417 1.20546 0.97511 0.93691 0.98520 1.20553 0.97839 0.95147 1.09664 1.20746 0.94317 0.97953 0.99242 1.21447 0.98908 0.94113 1.06401 1.17668 0.91503 0.90996 0.90223 1.18965 0.97830 1.22361 1.12813 0.89134 1.25631 0.95986 0.92049 0.97977 1.69743 1.38392 1.11127 1.25676 0.87093 0.84345 0.79123 0.80932 1.19919 1.20758 1.15714 0.89939 0.94328 0.91714 0.89514 0.93472 0.81408 0.77170 0.92717 0.93001 0.88709 0.88795 0.88797 0.87970 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 7.89 60.07 0.47 1.05 16 2 N -0.53 -10.85 4.70 -245.82 -1.16 -12.01 16 3 C 0.12 2.20 5.55 -4.97 -0.03 2.17 16 4 C 0.04 0.61 6.08 -82.10 -0.50 0.11 16 5 C -0.22 -2.81 11.12 -39.38 -0.44 -3.25 16 6 C -0.07 -0.83 12.30 29.74 0.37 -0.46 16 7 O 0.10 1.40 11.20 17.16 0.19 1.59 16 8 N -0.36 -6.34 10.84 33.42 0.36 -5.98 16 9 C 0.11 2.35 4.01 -4.98 -0.02 2.33 16 10 C -0.14 -3.19 3.45 -103.91 -0.36 -3.55 16 11 C -0.08 -1.76 9.66 -39.66 -0.38 -2.15 16 12 C -0.21 -4.30 10.05 -39.29 -0.39 -4.69 16 13 C -0.10 -2.14 10.02 -39.66 -0.40 -2.54 16 14 C -0.19 -4.31 9.80 -38.87 -0.38 -4.69 16 15 C 0.10 2.39 3.67 -106.82 -0.39 2.00 16 16 C -0.49 -12.58 5.86 -37.74 -0.22 -12.80 16 17 H 0.09 2.52 8.02 -52.49 -0.42 2.10 16 18 C 0.10 2.48 3.23 -17.34 -0.06 2.42 16 19 N -0.82 -21.45 12.87 55.55 0.71 -20.73 16 20 Si 0.86 19.82 25.16 -169.99 -4.28 15.54 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.23 -5.38 5.66 56.52 0.32 -5.06 16 24 H 0.08 2.04 5.71 -51.93 -0.30 1.75 16 25 H 0.04 0.85 6.08 -51.93 -0.32 0.54 16 26 H 0.06 1.62 5.64 -51.93 -0.29 1.33 16 27 H 0.09 1.30 7.86 -51.93 -0.41 0.89 16 28 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 29 H 0.17 1.74 8.06 -52.48 -0.42 1.31 16 30 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.05 1.05 7.72 -51.93 -0.40 0.65 16 32 H 0.05 1.21 2.96 -51.93 -0.15 1.05 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 37 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -28.22 296.08 -6.89 -35.11 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.46 Total: 6.03 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.73 Total: -24.03 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.08 Total: -38.71 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.28 Total: 15.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.22 -6.89 -35.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.292 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds