Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00009 * 2 1 4 4 C 1.50701 * 109.46902 * 66.04308 * 3 2 1 5 5 C 1.41374 * 126.79958 * 95.00325 * 4 3 2 6 6 C 1.35455 * 103.98944 * 179.97438 * 5 4 3 7 7 O 1.34045 * 106.44137 * 359.97438 * 6 5 4 8 8 N 1.20923 * 111.56495 * 359.71349 * 7 6 5 9 9 C 1.46894 * 111.00132 * 236.04498 * 2 1 3 10 10 C 1.50704 * 109.46965 * 288.00854 * 9 2 1 11 11 C 1.37642 * 120.12583 * 265.29613 * 10 9 2 12 12 C 1.38607 * 120.24786 * 179.75151 * 11 10 9 13 13 C 1.38664 * 120.50344 * 0.25039 * 12 11 10 14 14 C 1.37597 * 120.24518 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.13168 * 85.56928 * 10 9 2 16 16 C 1.41402 * 120.24241 * 359.97438 * 15 10 9 17 17 H 1.07998 * 119.99895 * 232.17702 * 16 15 10 18 18 C 1.39946 * 119.99754 * 52.17613 * 16 15 10 19 19 N 1.30822 * 119.99872 * 203.49287 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 23.50388 * 18 16 15 21 21 H 1.48496 * 109.47629 * 86.56270 * 20 18 16 22 22 H 1.48506 * 109.46796 * 206.56771 * 20 18 16 23 23 H 1.48510 * 109.47077 * 326.56134 * 20 18 16 24 24 H 1.09001 * 109.47350 * 190.82869 * 1 2 3 25 25 H 1.09004 * 109.47300 * 310.82747 * 1 2 3 26 26 H 1.08999 * 109.46892 * 70.82421 * 1 2 3 27 27 H 1.08998 * 109.46838 * 186.04525 * 3 2 1 28 28 H 1.08994 * 109.46820 * 306.04695 * 3 2 1 29 29 H 1.08010 * 128.01103 * 0.03295 * 5 4 3 30 30 H 1.08002 * 126.77831 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.47298 * 168.00727 * 9 2 1 32 32 H 1.09005 * 109.47302 * 48.00488 * 9 2 1 33 33 H 1.08002 * 119.87475 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.75373 * 180.23142 * 12 11 10 35 35 H 1.07998 * 119.87666 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.12336 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4433 2.1396 2.4559 6 6 1.6788 2.8332 3.3331 7 8 0.5284 3.1053 2.7012 8 7 0.5260 2.6673 1.5741 9 6 1.9955 -0.7660 -1.1375 10 6 1.7654 -2.2367 -0.9023 11 6 2.7557 -3.0095 -0.3398 12 6 2.5450 -4.3614 -0.1176 13 6 1.3388 -4.9518 -0.4632 14 6 0.3368 -4.1996 -1.0320 15 6 0.5396 -2.8262 -1.2622 16 6 -0.4831 -2.0432 -1.8456 17 1 -1.4792 -2.0583 -1.4285 18 6 -0.2045 -1.2487 -2.9635 19 7 -0.9530 -0.2094 -3.2302 20 14 1.2359 -1.6723 -4.0749 21 1 0.7984 -2.6534 -5.1002 22 1 1.7231 -0.4399 -4.7451 23 1 2.3315 -2.2603 -3.2629 24 1 -0.3634 -1.0094 0.1931 25 1 -0.3634 0.6719 0.7776 26 1 -0.3633 0.3376 -0.9706 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 3.4389 1.7487 2.6059 30 1 1.9439 3.1119 4.3423 31 1 3.0641 -0.5771 -1.2393 32 1 1.4838 -0.4595 -2.0499 33 1 3.6989 -2.5600 -0.0664 34 1 3.3262 -4.9595 0.3277 35 1 1.1854 -6.0059 -0.2852 36 1 -0.6020 -4.6615 -1.2999 37 1 -0.7596 0.3415 -4.0049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235526925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = 87.012188 kcal Electronic energy + Delta-G solvation = -21043.152879 eV Core-core repulsion = 17981.649288 eV Total energy + Delta-G solvation = -3061.503591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.84364 -40.26722 -38.05794 -35.55335 -34.68010 -32.65057 -32.17396 -31.93730 -28.69299 -28.13680 -26.53086 -24.33295 -23.59786 -22.39882 -21.71606 -21.26391 -19.43377 -18.60718 -18.53261 -17.32929 -16.64551 -16.44324 -16.10690 -15.90045 -15.47003 -15.12526 -14.80355 -14.56037 -14.18078 -13.83225 -13.55719 -13.32912 -13.25484 -13.01600 -12.72256 -12.51353 -12.40344 -12.29028 -12.06002 -11.89790 -11.50345 -11.34202 -11.03545 -10.82321 -10.47316 -9.37451 -9.23038 -9.00934 -8.62963 -6.31450 0.69888 0.84638 0.91631 1.25400 1.35446 1.37432 1.43802 2.16978 2.58303 2.71257 3.12687 3.39499 3.61335 3.70085 4.15762 4.27419 4.34773 4.44959 4.47012 4.55309 4.55942 4.65648 4.69016 4.80441 4.89161 4.92829 5.06506 5.11956 5.22485 5.23954 5.43760 5.55566 5.67410 5.90783 5.98228 6.07781 6.13437 6.21703 6.41619 6.56864 6.89439 7.00718 7.47927 8.40437 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.006754 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.716209 B = 4144.732151 C = 4885.997028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.521 5.521 3 C 0.125 3.875 4 C 0.009 3.991 5 C -0.225 4.225 6 C -0.050 4.050 7 O 0.089 5.911 8 N -0.403 5.403 9 C 0.106 3.894 10 C -0.147 4.147 11 C -0.092 4.092 12 C -0.197 4.197 13 C -0.106 4.106 14 C -0.207 4.207 15 C 0.073 3.927 16 C -0.501 4.501 17 H 0.047 0.953 18 C 0.070 3.930 19 N -0.862 5.862 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.228 1.228 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.119 0.881 28 H 0.025 0.975 29 H 0.197 0.803 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 3.467 9.694 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.245 5.245 3 C -0.003 4.003 4 C -0.149 4.149 5 C -0.246 4.246 6 C -0.131 4.131 7 O 0.022 5.978 8 N -0.108 5.108 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.111 4.111 12 C -0.216 4.216 13 C -0.124 4.124 14 C -0.226 4.226 15 C 0.070 3.930 16 C -0.533 4.533 17 H 0.065 0.935 18 C -0.140 4.140 19 N -0.492 5.492 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.150 1.150 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.137 0.863 28 H 0.043 0.957 29 H 0.214 0.786 30 H 0.282 0.718 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.258 3.717 9.280 14.324 hybrid contribution 0.086 0.074 -1.378 1.383 sum 10.344 3.791 7.902 13.558 Atomic orbital electron populations 1.22272 0.87089 1.00761 0.99777 1.62113 1.08429 1.11049 1.42922 1.20463 1.01511 0.88151 0.90156 1.23670 0.91405 1.00117 0.99739 1.23032 1.04347 1.05411 0.91842 1.26922 0.84433 0.99607 1.02166 1.84783 1.36428 1.58034 1.18507 1.73913 1.23074 1.15474 0.98331 1.21041 0.98625 0.91164 0.91261 1.19986 0.96494 0.94127 1.04273 1.20942 0.98171 0.94186 0.97765 1.21076 0.98196 0.95125 1.07192 1.21110 0.93730 0.99499 0.98069 1.21628 0.99804 0.94072 1.07074 1.17771 0.92187 0.91673 0.91328 1.18749 0.96549 1.24152 1.13819 0.93531 1.26094 0.97773 0.91683 0.98433 1.69809 1.40474 1.12373 1.26501 0.86390 0.82313 0.78943 0.79360 1.20539 1.19801 1.15024 0.92681 0.94334 0.94556 0.86256 0.95655 0.78603 0.71793 0.89771 0.95080 0.85628 0.84925 0.85472 0.88348 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.37 7.89 127.69 1.01 3.38 16 2 N -0.52 -21.43 4.70 -931.65 -4.38 -25.81 16 3 C 0.13 4.37 5.55 85.56 0.47 4.84 16 4 C 0.01 0.28 6.08 43.58 0.27 0.54 16 5 C -0.22 -5.09 11.12 22.40 0.25 -4.84 16 6 C -0.05 -0.93 12.30 67.18 0.83 -0.11 16 7 O 0.09 2.51 11.20 71.59 0.80 3.31 16 8 N -0.40 -14.35 10.84 -49.56 -0.54 -14.89 16 9 C 0.11 4.45 4.01 85.56 0.34 4.79 16 10 C -0.15 -6.52 3.45 -19.40 -0.07 -6.59 16 11 C -0.09 -3.52 9.66 22.22 0.21 -3.30 16 12 C -0.20 -7.03 10.05 22.46 0.23 -6.81 16 13 C -0.11 -4.02 10.02 22.22 0.22 -3.80 16 14 C -0.21 -9.34 9.80 22.73 0.22 -9.12 16 15 C 0.07 3.57 3.67 -21.29 -0.08 3.49 16 16 C -0.50 -27.33 5.86 23.46 0.14 -27.19 16 17 H 0.05 2.86 8.02 -2.91 -0.02 2.83 16 18 C 0.07 3.74 3.23 85.26 0.28 4.02 16 19 N -0.86 -47.84 12.87 21.83 0.28 -47.56 16 20 Si 0.91 41.51 25.16 68.60 1.73 43.24 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.23 -10.04 5.66 99.48 0.56 -9.48 16 24 H 0.05 2.90 5.71 -2.39 -0.01 2.89 16 25 H 0.04 1.80 6.08 -2.39 -0.01 1.79 16 26 H 0.04 1.95 5.64 -2.39 -0.01 1.93 16 27 H 0.12 3.28 7.86 -2.39 -0.02 3.27 16 28 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 29 H 0.20 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.27 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.08 2.98 7.72 -2.39 -0.02 2.96 16 32 H 0.03 1.47 2.96 -2.38 -0.01 1.46 16 33 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 34 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.28 14.47 8.30 -92.71 -0.77 13.70 16 Total: -1.00 -65.85 296.08 3.15 -62.70 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.94 Total: 19.71 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.32 Total: -40.69 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.63 Total: -88.26 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.80 Total: 3.31 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.73 Total: 43.24 kcal Total: -65.85 3.15 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.708 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds