Wall clock time and date at job start Mon Mar 30 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 N 1.46507 * 109.47230 * 120.00223 * 2 1 3 5 5 C 1.36464 * 125.47845 * 299.69343 * 4 2 1 6 6 C 1.34577 * 108.54015 * 179.83198 * 5 4 2 7 7 C 1.41895 * 107.31472 * 0.41710 * 6 5 4 8 8 C 1.48215 * 126.47520 * 179.71252 * 7 6 5 9 9 C 1.39498 * 119.65844 * 359.76722 * 8 7 6 10 10 C 1.38170 * 119.13984 * 179.72654 * 9 8 7 11 11 C 1.39459 * 118.46948 * 0.52758 * 10 9 8 12 12 O 1.35741 * 120.37858 * 179.70532 * 11 10 9 13 13 C 1.34814 * 117.00139 * 354.54520 * 12 11 10 14 14 H 1.07995 * 119.99489 * 5.05381 * 13 12 11 15 15 C 1.38634 * 119.99934 * 185.05426 * 13 12 11 16 16 N 1.31570 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47303 * 60.00467 * 17 15 13 19 19 H 1.48506 * 109.46913 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47196 * 299.99922 * 17 15 13 21 21 C 1.38873 * 119.24605 * 359.73207 * 11 10 9 22 22 N 1.31731 * 120.79129 * 359.97438 * 21 11 10 23 23 C 1.36021 * 125.49008 * 120.00030 * 4 2 1 24 24 H 1.09006 * 109.47172 * 300.00256 * 1 2 3 25 25 H 1.08998 * 109.47504 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47398 * 60.00081 * 1 2 3 27 27 H 1.09006 * 109.47172 * 239.99744 * 2 1 3 28 28 H 1.08996 * 109.47151 * 59.99732 * 3 2 1 29 29 H 1.09001 * 109.47470 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46946 * 299.99685 * 3 2 1 31 31 H 1.07992 * 125.72862 * 359.95925 * 5 4 2 32 32 H 1.07998 * 126.34470 * 180.14562 * 6 5 4 33 33 H 1.07993 * 120.42861 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.76634 * 180.25689 * 10 9 8 35 35 H 0.96994 * 120.00198 * 180.02562 * 16 15 13 36 36 H 1.07994 * 119.60370 * 179.97438 * 21 11 10 37 37 H 1.08006 * 125.96387 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7633 -0.3198 2.4845 6 6 2.3725 -1.1915 3.3092 7 6 3.0444 -2.1419 2.4976 8 6 3.8557 -3.2883 2.9712 9 6 4.0143 -3.5028 4.3405 10 6 4.7681 -4.5781 4.7701 11 6 5.3533 -5.4051 3.8117 12 8 6.1066 -6.4688 4.1907 13 6 6.3467 -6.6099 5.5097 14 1 5.8790 -5.9423 6.2181 15 6 7.1941 -7.6120 5.9567 16 7 7.7643 -8.4250 5.0935 17 14 7.5274 -7.8070 7.7843 18 1 6.2508 -8.0733 8.4946 19 1 8.4591 -8.9432 7.9990 20 1 8.1368 -6.5599 8.3121 21 6 5.1571 -5.1275 2.4652 22 7 4.4277 -4.0974 2.0883 23 6 2.8036 -1.8013 1.2015 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.1704 0.5292 2.7907 32 1 2.3570 -1.1690 4.3889 33 1 3.5505 -2.8394 5.0553 34 1 4.9046 -4.7712 5.8240 35 1 8.3568 -9.1263 5.4063 36 1 5.6080 -5.7639 1.7182 37 1 3.1715 -2.3222 0.3298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239067287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:12 Heat of formation + Delta-G solvation = 31.072138 kcal Electronic energy + Delta-G solvation = -19462.244673 eV Core-core repulsion = 16398.315339 eV Total energy + Delta-G solvation = -3063.929333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16468 -41.05587 -38.87391 -36.25565 -34.38462 -33.00232 -32.07919 -30.28394 -28.92166 -28.15225 -27.33654 -24.60348 -23.96155 -23.00129 -21.01676 -20.21299 -19.80601 -18.93290 -18.09422 -17.05138 -16.52941 -16.22409 -15.88572 -15.60032 -15.31178 -15.19665 -14.81094 -14.40020 -14.13242 -14.10512 -13.62013 -13.58973 -13.48695 -13.09855 -13.01207 -12.88696 -12.69945 -12.61072 -12.20453 -12.18083 -11.93412 -11.64665 -10.93391 -10.54343 -10.38089 -9.98466 -9.17084 -8.49986 -8.45008 -6.16552 0.27085 0.44601 1.36421 1.44180 1.51833 1.52902 2.07361 2.13313 2.16999 2.93091 3.27286 3.34722 3.67404 3.69948 3.99396 4.04201 4.07954 4.13469 4.22458 4.35268 4.45700 4.61316 4.65931 4.70190 4.83466 4.85699 4.91204 4.99885 5.03139 5.14830 5.27767 5.28002 5.37011 5.41031 5.60318 5.86710 5.95898 6.07892 6.33377 6.60374 6.93351 7.18796 7.69144 8.72531 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.003160 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.925374 B = 8857.747426 C = 9210.482501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 C -0.157 4.157 4 N -0.437 5.437 5 C -0.003 4.003 6 C -0.204 4.204 7 C -0.141 4.141 8 C 0.110 3.890 9 C -0.109 4.109 10 C -0.193 4.193 11 C 0.066 3.934 12 O -0.216 6.216 13 C -0.418 4.418 14 H 0.104 0.896 15 C -0.019 4.019 16 N -0.916 5.916 17 Si 1.020 2.980 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.257 1.257 21 C 0.025 3.975 22 N -0.455 5.455 23 C 0.012 3.988 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.275 0.725 36 H 0.153 0.847 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.124 19.728 -6.092 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 C -0.215 4.215 4 N -0.113 5.113 5 C -0.132 4.132 6 C -0.229 4.229 7 C -0.149 4.149 8 C -0.027 4.027 9 C -0.129 4.129 10 C -0.219 4.219 11 C 0.012 3.988 12 O -0.121 6.121 13 C -0.494 4.494 14 H 0.122 0.878 15 C -0.217 4.217 16 N -0.553 5.553 17 Si 0.839 3.161 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.135 4.135 22 N -0.165 5.165 23 C -0.122 4.122 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.209 0.791 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.122 19.710 -7.431 25.360 hybrid contribution 0.740 -0.971 1.584 1.999 sum -13.382 18.739 -5.848 23.757 Atomic orbital electron populations 1.22148 0.92239 1.02701 1.04375 1.21738 0.96274 0.94479 0.85703 1.22151 1.01326 0.93622 1.04383 1.44430 1.38324 1.21548 1.06996 1.21963 1.06196 1.02887 0.82163 1.21049 1.04628 0.97589 0.99597 1.17977 1.05454 0.97552 0.93898 1.19297 0.98836 0.95221 0.89323 1.21951 0.97694 0.96819 0.96404 1.21681 1.02137 0.97615 1.00467 1.20864 0.93347 0.89023 0.95521 1.83948 1.61391 1.39075 1.27677 1.21826 1.29554 1.18017 0.80022 0.87844 1.26615 0.94710 0.94464 1.05935 1.70176 1.29754 1.18171 1.37206 0.84632 0.79132 0.78864 0.73509 1.18011 1.19613 1.18083 1.21850 1.02160 0.97665 0.91794 1.67504 1.07354 1.03152 1.38451 1.21905 1.00023 0.91976 0.98264 0.91258 0.93114 0.88537 0.88030 0.91239 0.93116 0.88543 0.79135 0.83677 0.82741 0.84193 0.91615 0.82984 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.24 71.98 0.66 -0.89 16 2 C 0.12 1.57 3.54 44.99 0.16 1.73 16 3 C -0.16 -1.56 9.23 71.98 0.66 -0.89 16 4 N -0.44 -9.22 2.61 -501.25 -1.31 -10.53 16 5 C 0.00 -0.06 10.30 83.13 0.86 0.80 16 6 C -0.20 -5.40 10.23 22.34 0.23 -5.17 16 7 C -0.14 -4.68 6.09 -20.20 -0.12 -4.80 16 8 C 0.11 4.41 6.75 41.97 0.28 4.70 16 9 C -0.11 -4.22 9.61 22.56 0.22 -4.00 16 10 C -0.19 -8.66 9.25 22.55 0.21 -8.46 16 11 C 0.07 3.38 6.67 22.72 0.15 3.53 16 12 O -0.22 -12.99 9.76 -22.48 -0.22 -13.21 16 13 C -0.42 -24.11 9.49 67.91 0.64 -23.47 16 14 H 0.10 5.41 5.25 -2.91 -0.02 5.39 16 15 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16 16 N -0.92 -55.72 13.67 21.61 0.30 -55.42 16 17 Si 1.02 42.18 29.55 68.60 2.03 44.21 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 C 0.03 1.19 11.14 84.86 0.95 2.13 16 22 N -0.45 -19.80 10.06 -184.34 -1.85 -21.65 16 23 C 0.01 0.34 11.10 83.56 0.93 1.26 16 24 H 0.07 0.63 7.92 -2.38 -0.02 0.61 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.10 1.26 8.06 -2.38 -0.02 1.24 16 28 H 0.07 0.63 7.91 -2.39 -0.02 0.61 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.15 3.38 7.39 -2.91 -0.02 3.35 16 33 H 0.16 4.79 7.07 -2.91 -0.02 4.77 16 34 H 0.14 6.05 5.75 -2.91 -0.02 6.04 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.15 6.86 8.06 -2.91 -0.02 6.83 16 37 H 0.16 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -72.92 319.51 6.31 -66.61 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.07 Total: 24.12 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 6.29 Total: -34.12 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.87 Total: -87.61 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.22 Total: -13.21 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -72.92 6.31 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239067287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.683 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds