Wall clock time and date at job start Mon Mar 30 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 N 1.46497 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.34862 * 125.89947 * 125.31392 * 4 3 2 6 6 C 1.36474 * 107.60332 * 180.14715 * 5 4 3 7 7 C 1.48414 * 126.22579 * 179.87518 * 6 5 4 8 8 C 1.39224 * 120.15294 * 309.98366 * 7 6 5 9 9 C 1.38047 * 119.95050 * 180.23315 * 8 7 6 10 10 C 1.38425 * 120.25822 * 359.76932 * 9 8 7 11 11 C 1.38138 * 120.30867 * 359.97438 * 10 9 8 12 12 C 1.38732 * 120.04553 * 359.97438 * 11 10 9 13 13 O 1.35697 * 120.12443 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00548 * 5.59633 * 13 12 11 15 15 H 1.08000 * 119.99413 * 354.93002 * 14 13 12 16 16 C 1.38635 * 120.00095 * 174.65717 * 14 13 12 17 17 N 1.31572 * 119.99838 * 180.27254 * 16 14 13 18 18 Si 1.86795 * 120.00237 * 0.27426 * 16 14 13 19 19 H 1.48501 * 109.47171 * 89.99813 * 18 16 14 20 20 H 1.48500 * 109.47342 * 210.00122 * 18 16 14 21 21 H 1.48510 * 109.47043 * 330.00019 * 18 16 14 22 22 C 1.40868 * 107.54555 * 359.60595 * 6 5 4 23 23 N 1.30674 * 108.10342 * 0.24586 * 22 6 5 24 24 H 1.09002 * 109.47056 * 300.00012 * 1 2 3 25 25 H 1.08999 * 109.47457 * 60.00049 * 1 2 3 26 26 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47056 * 239.99987 * 2 1 3 28 28 H 1.08999 * 109.47457 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.47076 * 60.00000 * 3 2 1 30 30 H 1.08999 * 109.46824 * 300.00338 * 3 2 1 31 31 H 1.08008 * 126.19335 * 0.03030 * 5 4 3 32 32 H 1.08000 * 120.02423 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.87254 * 179.79052 * 9 8 7 34 34 H 1.08000 * 119.84146 * 179.97438 * 10 9 8 35 35 H 1.07998 * 119.97335 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99957 * 179.97438 * 17 16 14 37 37 H 1.08003 * 125.94697 * 180.21903 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2954 2.0741 -0.8923 6 6 5.5913 1.8237 -0.5452 7 6 6.7995 2.3187 -1.2507 8 6 6.9169 2.1639 -2.6294 9 6 8.0448 2.6215 -3.2807 10 6 9.0590 3.2388 -2.5691 11 6 8.9514 3.4027 -1.2017 12 6 7.8230 2.9485 -0.5344 13 8 7.7153 3.1092 0.8087 14 6 8.6842 3.8200 1.4198 15 1 9.5399 4.1619 0.8566 16 6 8.5793 4.1169 2.7700 17 7 9.5223 4.8152 3.3651 18 14 7.0993 3.5254 3.7441 19 1 7.3861 2.1850 4.3153 20 1 6.8163 4.4820 4.8442 21 1 5.9187 3.4391 2.8473 22 6 5.5733 1.0152 0.6082 23 7 4.3262 0.7914 0.9278 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9629 2.6687 -1.7304 32 1 6.1277 1.6832 -3.1883 33 1 8.1360 2.4978 -4.3497 34 1 9.9386 3.5939 -3.0854 35 1 9.7458 3.8854 -0.6519 36 1 9.4488 5.0232 4.3097 37 1 6.4395 0.6444 1.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240134346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:15 Heat of formation + Delta-G solvation = 68.580912 kcal Electronic energy + Delta-G solvation = -20182.964517 eV Core-core repulsion = 17120.661686 eV Total energy + Delta-G solvation = -3062.302831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78036 -38.96446 -36.45830 -35.37038 -32.39531 -31.80039 -31.06879 -29.17181 -28.22264 -25.98642 -25.18429 -22.37302 -22.18075 -21.24912 -20.13165 -19.76217 -17.79156 -17.42880 -16.47717 -15.61546 -14.95626 -14.77437 -14.49480 -14.09461 -13.93083 -13.71103 -13.63730 -13.17923 -12.89172 -12.51580 -12.32797 -12.23812 -12.14570 -12.04285 -11.55207 -11.35083 -11.12470 -10.89389 -10.78276 -10.65593 -10.29760 -10.06708 -9.35996 -9.01836 -8.85439 -8.60428 -7.74548 -7.11684 -6.38913 -4.04320 1.90677 2.30382 2.38257 2.78041 3.26169 3.30027 3.37477 3.48889 4.28214 4.45444 4.56611 4.68998 4.87676 4.92225 5.07257 5.14007 5.19717 5.27904 5.37820 5.46853 5.62026 5.68255 5.73097 5.84202 5.87071 5.98832 6.11230 6.15882 6.18592 6.46797 6.60389 6.81367 6.99950 7.18757 7.24473 7.33883 7.39810 7.65079 7.83267 8.06831 8.11581 8.97277 9.61566 10.68613 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.006632 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.483679 B = 4221.159720 C = 5969.761151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.138 3.862 4 N -0.380 5.380 5 C 0.048 3.952 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.070 4.070 9 C -0.205 4.205 10 C -0.077 4.077 11 C -0.221 4.221 12 C 0.169 3.831 13 O -0.206 6.206 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.067 3.933 17 N -0.880 5.880 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.256 1.256 22 C 0.076 3.924 23 N -0.305 5.305 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.170 0.830 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.279 0.721 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 -6.391 -9.550 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.017 3.983 4 N -0.163 5.163 5 C -0.097 4.097 6 C -0.171 4.171 7 C -0.089 4.089 8 C -0.089 4.089 9 C -0.224 4.224 10 C -0.096 4.096 11 C -0.240 4.240 12 C 0.116 3.884 13 O -0.110 6.110 14 C -0.464 4.464 15 H 0.123 0.877 16 C -0.137 4.137 17 N -0.518 5.518 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.180 1.180 22 C -0.111 4.111 23 N -0.125 5.125 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.187 0.813 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.353 -6.933 -8.334 17.987 hybrid contribution 0.254 0.462 -0.047 0.530 sum -14.098 -6.471 -8.381 17.631 Atomic orbital electron populations 1.21712 0.94776 1.02250 1.01993 1.21796 0.95979 0.95855 1.03754 1.21658 0.74823 0.98512 1.03348 1.48369 1.05849 1.40289 1.21759 1.22421 0.90684 0.99894 0.96707 1.18681 0.91750 1.06664 0.99991 1.17180 0.92995 1.06742 0.91936 1.20665 0.97260 0.98708 0.92240 1.20566 0.96114 1.06957 0.98800 1.20829 0.97742 0.97321 0.93682 1.21225 0.99926 1.08045 0.94812 1.19076 0.92434 0.93075 0.83804 1.83597 1.47627 1.64461 1.15354 1.20778 1.00290 1.31528 0.93766 0.87653 1.24414 0.98006 0.95418 0.95828 1.69653 1.33106 1.36920 1.12136 0.86275 0.83208 0.78673 0.79473 1.19765 1.21074 1.17963 1.23970 0.94601 0.97031 0.95461 1.77126 1.01803 1.20235 1.13357 0.92375 0.92542 0.92144 0.91494 0.90403 0.90243 0.89075 0.81326 0.87072 0.87501 0.87341 0.84917 0.91127 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.14 -1.33 6.11 -26.73 -0.16 -1.49 16 3 C 0.14 1.52 6.50 -4.04 -0.03 1.49 16 4 N -0.38 -5.99 3.67 -61.08 -0.22 -6.21 16 5 C 0.05 0.77 11.31 -16.86 -0.19 0.58 16 6 C -0.16 -3.06 5.32 -105.35 -0.56 -3.62 16 7 C -0.09 -1.72 5.77 -104.71 -0.60 -2.32 16 8 C -0.07 -1.19 9.70 -39.28 -0.38 -1.57 16 9 C -0.21 -3.39 10.03 -39.58 -0.40 -3.78 16 10 C -0.08 -1.39 10.03 -39.55 -0.40 -1.78 16 11 C -0.22 -4.73 9.16 -39.44 -0.36 -5.09 16 12 C 0.17 3.88 6.63 -38.77 -0.26 3.62 16 13 O -0.21 -5.36 7.49 0.26 0.00 -5.36 16 14 C -0.39 -10.87 9.95 30.88 0.31 -10.57 16 15 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 16 C 0.07 1.88 5.49 -17.52 -0.10 1.79 16 17 N -0.88 -25.61 13.96 55.48 0.77 -24.84 16 18 Si 0.90 22.36 28.62 -169.99 -4.86 17.49 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.08 1.51 11.30 -17.05 -0.19 1.32 16 23 N -0.30 -5.77 12.38 30.81 0.38 -5.39 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.17 2.10 8.06 -52.48 -0.42 1.67 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 36 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.18 3.55 8.06 -52.48 -0.42 3.13 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -31.50 321.25 -6.83 -38.32 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.79 Total: 3.28 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.95 Total: -22.14 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.93 Total: -36.44 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.00 Total: -5.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.49 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.50 -6.83 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240134346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.903 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds