Wall clock time and date at job start Mon Mar 30 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 N 1.46497 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.34862 * 125.89947 * 125.31392 * 4 3 2 6 6 C 1.36474 * 107.60332 * 180.14715 * 5 4 3 7 7 C 1.48414 * 126.22579 * 179.87518 * 6 5 4 8 8 C 1.39224 * 120.15294 * 309.98366 * 7 6 5 9 9 C 1.38047 * 119.95050 * 180.23315 * 8 7 6 10 10 C 1.38425 * 120.25822 * 359.76932 * 9 8 7 11 11 C 1.38138 * 120.30867 * 359.97438 * 10 9 8 12 12 C 1.38732 * 120.04553 * 359.97438 * 11 10 9 13 13 O 1.35697 * 120.12443 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00548 * 5.59633 * 13 12 11 15 15 H 1.08000 * 119.99413 * 354.93002 * 14 13 12 16 16 C 1.38635 * 120.00095 * 174.65717 * 14 13 12 17 17 N 1.31572 * 119.99838 * 180.27254 * 16 14 13 18 18 Si 1.86795 * 120.00237 * 0.27426 * 16 14 13 19 19 H 1.48501 * 109.47171 * 89.99813 * 18 16 14 20 20 H 1.48500 * 109.47342 * 210.00122 * 18 16 14 21 21 H 1.48510 * 109.47043 * 330.00019 * 18 16 14 22 22 C 1.40868 * 107.54555 * 359.60595 * 6 5 4 23 23 N 1.30674 * 108.10342 * 0.24586 * 22 6 5 24 24 H 1.09002 * 109.47056 * 300.00012 * 1 2 3 25 25 H 1.08999 * 109.47457 * 60.00049 * 1 2 3 26 26 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47056 * 239.99987 * 2 1 3 28 28 H 1.08999 * 109.47457 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.47076 * 60.00000 * 3 2 1 30 30 H 1.08999 * 109.46824 * 300.00338 * 3 2 1 31 31 H 1.08008 * 126.19335 * 0.03030 * 5 4 3 32 32 H 1.08000 * 120.02423 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.87254 * 179.79052 * 9 8 7 34 34 H 1.08000 * 119.84146 * 179.97438 * 10 9 8 35 35 H 1.07998 * 119.97335 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99957 * 179.97438 * 17 16 14 37 37 H 1.08003 * 125.94697 * 180.21903 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2954 2.0741 -0.8923 6 6 5.5913 1.8237 -0.5452 7 6 6.7995 2.3187 -1.2507 8 6 6.9169 2.1639 -2.6294 9 6 8.0448 2.6215 -3.2807 10 6 9.0590 3.2388 -2.5691 11 6 8.9514 3.4027 -1.2017 12 6 7.8230 2.9485 -0.5344 13 8 7.7153 3.1092 0.8087 14 6 8.6842 3.8200 1.4198 15 1 9.5399 4.1619 0.8566 16 6 8.5793 4.1169 2.7700 17 7 9.5223 4.8152 3.3651 18 14 7.0993 3.5254 3.7441 19 1 7.3861 2.1850 4.3153 20 1 6.8163 4.4820 4.8442 21 1 5.9187 3.4391 2.8473 22 6 5.5733 1.0152 0.6082 23 7 4.3262 0.7914 0.9278 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9629 2.6687 -1.7304 32 1 6.1277 1.6832 -3.1883 33 1 8.1360 2.4978 -4.3497 34 1 9.9386 3.5939 -3.0854 35 1 9.7458 3.8854 -0.6519 36 1 9.4488 5.0232 4.3097 37 1 6.4395 0.6444 1.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240134346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:15 Heat of formation + Delta-G solvation = 50.274359 kcal Electronic energy + Delta-G solvation = -20183.758349 eV Core-core repulsion = 17120.661686 eV Total energy + Delta-G solvation = -3063.096663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11622 -40.61778 -38.10857 -36.27802 -34.44042 -33.12328 -32.31555 -30.72953 -29.55479 -27.22373 -26.94640 -23.74743 -23.27843 -22.71829 -21.41553 -21.12942 -19.70042 -19.02302 -17.86811 -16.68603 -16.45311 -16.38017 -15.73591 -15.59422 -15.44587 -15.28603 -15.14845 -14.33201 -14.19818 -14.09698 -14.04317 -13.67875 -13.20860 -13.06195 -12.85990 -12.64026 -12.46335 -12.30273 -12.28449 -12.02404 -11.80440 -11.53666 -11.20837 -10.91411 -10.33707 -10.03245 -9.25007 -8.67139 -8.50083 -6.17990 0.46464 0.77374 1.01246 1.25925 1.29251 1.47669 1.65772 1.91599 2.24667 2.81287 3.11787 3.26295 3.54082 3.92426 4.01135 4.02198 4.21424 4.25994 4.33818 4.40705 4.44322 4.55805 4.69808 4.70123 4.75708 4.87551 5.03205 5.05885 5.11829 5.18591 5.32828 5.36802 5.49087 5.54932 5.77146 5.83134 5.86984 5.96384 6.20944 6.33063 6.74467 6.86973 7.68005 8.62085 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.006632 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.483679 B = 4221.159720 C = 5969.761151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.125 3.875 4 N -0.371 5.371 5 C 0.072 3.928 6 C -0.197 4.197 7 C -0.081 4.081 8 C -0.065 4.065 9 C -0.178 4.178 10 C -0.081 4.081 11 C -0.240 4.240 12 C 0.126 3.874 13 O -0.233 6.233 14 C -0.389 4.389 15 H 0.083 0.917 16 C 0.018 3.982 17 N -0.924 5.924 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.051 3.949 23 N -0.329 5.329 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.214 0.786 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.282 0.718 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -6.962 -12.958 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.006 3.994 4 N -0.153 5.153 5 C -0.075 4.075 6 C -0.208 4.208 7 C -0.084 4.084 8 C -0.083 4.083 9 C -0.196 4.196 10 C -0.099 4.099 11 C -0.260 4.260 12 C 0.077 3.923 13 O -0.140 6.140 14 C -0.466 4.466 15 H 0.101 0.899 16 C -0.180 4.180 17 N -0.565 5.565 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.134 4.134 23 N -0.150 5.150 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.231 0.769 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.342 -7.530 -11.770 22.271 hybrid contribution 1.074 0.549 0.640 1.365 sum -16.268 -6.981 -11.131 20.911 Atomic orbital electron populations 1.21675 0.92443 1.02936 1.03029 1.21722 0.97847 0.94796 1.02374 1.22178 0.71986 0.99734 1.05501 1.48818 1.07431 1.38590 1.20471 1.22991 0.89405 0.98282 0.96859 1.18824 0.92974 1.08345 1.00701 1.17522 0.92432 1.05210 0.93209 1.21156 0.98497 0.97702 0.90926 1.21145 0.94350 1.03204 1.00900 1.21182 0.99546 0.97124 0.92076 1.21263 0.99190 1.08854 0.96665 1.19662 0.94370 0.95116 0.83163 1.83565 1.47227 1.66033 1.17183 1.20733 1.00352 1.31454 0.94055 0.89905 1.25039 1.00292 0.96021 0.96662 1.69723 1.34875 1.39252 1.12664 0.85373 0.79707 0.78513 0.78081 1.19372 1.19661 1.19621 1.23873 0.94743 0.98386 0.96392 1.77055 1.01774 1.21437 1.14784 0.92116 0.90699 0.91715 0.91710 0.93015 0.89951 0.85024 0.76900 0.83004 0.82881 0.84440 0.87559 0.90784 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.13 -2.22 6.11 30.59 0.19 -2.04 16 3 C 0.13 2.33 6.50 86.38 0.56 2.89 16 4 N -0.37 -10.81 3.67 -347.16 -1.27 -12.09 16 5 C 0.07 2.05 11.31 83.82 0.95 3.00 16 6 C -0.20 -7.33 5.32 -20.33 -0.11 -7.44 16 7 C -0.08 -3.15 5.77 -19.92 -0.11 -3.26 16 8 C -0.06 -1.92 9.70 22.46 0.22 -1.70 16 9 C -0.18 -4.98 10.03 22.27 0.22 -4.76 16 10 C -0.08 -2.72 10.03 22.29 0.22 -2.50 16 11 C -0.24 -10.56 9.16 22.36 0.20 -10.36 16 12 C 0.13 5.96 6.63 22.79 0.15 6.11 16 13 O -0.23 -12.79 7.49 -21.98 -0.16 -12.95 16 14 C -0.39 -23.26 9.95 67.91 0.68 -22.58 16 15 H 0.08 5.15 5.44 -2.91 -0.02 5.14 16 16 C 0.02 1.07 5.49 84.83 0.47 1.54 16 17 N -0.92 -56.42 13.96 21.61 0.30 -56.12 16 18 Si 0.96 48.51 28.62 68.60 1.96 50.47 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.27 -14.24 7.11 99.48 0.71 -13.53 16 22 C 0.05 2.10 11.30 85.51 0.97 3.06 16 23 N -0.33 -12.41 12.38 -56.44 -0.70 -13.11 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.42 8.07 -2.39 -0.02 1.40 16 31 H 0.21 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.11 5.15 5.64 -2.91 -0.02 5.13 16 36 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.16 6.91 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -74.01 321.25 6.51 -67.50 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.06 Total: 15.23 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 5.32 Total: -38.92 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.67 Total: -81.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.16 Total: -12.95 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.96 Total: 50.47 kcal Total: -74.01 6.51 -67.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240134346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.775 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds