Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42908 * 114.00065 * 2 1 4 4 C 1.52997 * 109.47089 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47108 * 180.02562 * 4 3 2 6 6 C 1.34697 * 125.81908 * 125.00216 * 5 4 3 7 7 C 1.37852 * 107.39178 * 180.02562 * 6 5 4 8 8 C 1.48003 * 126.36571 * 179.97438 * 7 6 5 9 9 C 1.39951 * 119.87888 * 359.72333 * 8 7 6 10 10 C 1.36231 * 120.11839 * 179.76262 * 9 8 7 11 11 C 1.40945 * 119.87942 * 0.48723 * 10 9 8 12 12 C 1.41021 * 120.11925 * 179.74293 * 11 10 9 13 13 H 1.08000 * 119.99947 * 204.71514 * 12 11 10 14 14 C 1.39948 * 119.99842 * 24.71267 * 12 11 10 15 15 N 1.30844 * 119.99956 * 17.96457 * 14 12 11 16 16 Si 1.86794 * 119.99763 * 197.96564 * 14 12 11 17 17 H 1.48501 * 109.47182 * 59.99791 * 16 14 12 18 18 H 1.48494 * 109.47028 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47100 * 300.00065 * 16 14 12 20 20 C 1.40935 * 119.76180 * 359.76222 * 11 10 9 21 21 C 1.36233 * 119.88402 * 0.02562 * 20 11 10 22 22 C 1.41090 * 107.26905 * 0.22322 * 7 6 5 23 23 N 1.30544 * 108.11775 * 359.61590 * 22 7 6 24 24 H 1.09005 * 109.47330 * 60.00172 * 1 2 3 25 25 H 1.09006 * 109.47390 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47315 * 299.99791 * 1 2 3 27 27 H 1.09001 * 109.46649 * 59.99706 * 3 2 1 28 28 H 1.08993 * 109.46964 * 300.00290 * 3 2 1 29 29 H 1.09001 * 109.47516 * 60.00358 * 4 3 2 30 30 H 1.09002 * 109.47543 * 300.00258 * 4 3 2 31 31 H 1.08004 * 126.30140 * 0.03287 * 6 5 4 32 32 H 1.08006 * 119.94289 * 359.97438 * 9 8 7 33 33 H 1.08000 * 120.06288 * 180.25088 * 10 9 8 34 34 H 0.96998 * 119.99674 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.06128 * 179.97438 * 20 11 10 36 36 H 1.07996 * 119.94368 * 179.97438 * 21 20 11 37 37 H 1.08002 * 125.93971 * 179.75364 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0238 2.9881 0.8965 7 6 5.3272 4.2848 0.5403 8 6 6.2653 5.1905 1.2404 9 6 6.9376 4.7484 2.3854 10 6 7.8059 5.5764 3.0308 11 6 8.0188 6.8838 2.5493 12 6 8.9123 7.7469 3.2166 13 1 8.7975 8.8171 3.1273 14 6 9.9477 7.2167 3.9946 15 7 10.3132 5.9705 3.8357 16 14 10.8080 8.2883 5.2599 17 1 9.8182 8.7671 6.2581 18 1 11.8602 7.4963 5.9460 19 1 11.4297 9.4535 4.5811 20 6 7.3351 7.3256 1.3988 21 6 6.4723 6.4881 0.7584 22 6 4.5727 4.5900 -0.6122 23 7 3.8697 3.5364 -0.9280 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4276 2.4450 1.7382 32 1 6.7704 3.7478 2.7562 33 1 8.3273 5.2329 3.9120 34 1 11.0306 5.6029 4.3752 35 1 7.4942 8.3266 1.0259 36 1 5.9476 6.8257 -0.1230 37 1 4.5778 5.5310 -1.1423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240625959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 44.050560 kcal Electronic energy + Delta-G solvation = -19247.921883 eV Core-core repulsion = 16184.555336 eV Total energy + Delta-G solvation = -3063.366547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65505 -38.19889 -37.41588 -34.10866 -33.38846 -30.86127 -29.75018 -29.29493 -28.06420 -26.48230 -24.81825 -23.41022 -21.49018 -21.35293 -19.55587 -19.37912 -17.36354 -17.18736 -16.44607 -16.09289 -15.49363 -15.22261 -14.61050 -14.20976 -14.04985 -13.59103 -13.42954 -13.24367 -12.58874 -12.35056 -12.19995 -11.92070 -11.86279 -11.60659 -11.59199 -11.18858 -11.11962 -10.81283 -10.62803 -10.27045 -9.98752 -9.62883 -9.37037 -9.25730 -9.06905 -8.45085 -7.53601 -6.90897 -6.74291 -4.31619 2.09299 2.55947 2.63075 3.02110 3.03812 3.08029 3.13892 3.63016 3.76772 3.89257 4.57165 4.69055 4.74081 5.01705 5.06007 5.08281 5.22637 5.29188 5.34434 5.50700 5.54756 5.74512 6.06402 6.12480 6.29712 6.32078 6.43615 6.74906 6.92379 7.03016 7.08844 7.27007 7.32544 7.40903 7.61469 7.91922 8.03016 8.05605 8.21371 8.26363 8.59872 8.84380 8.95665 10.11616 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.003067 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.027604 B = 9128.162675 C = 9533.784322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.144 3.856 5 N -0.378 5.378 6 C 0.019 3.981 7 C -0.129 4.129 8 C -0.152 4.152 9 C -0.087 4.087 10 C -0.167 4.167 11 C 0.112 3.888 12 C -0.456 4.456 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.787 5.787 16 Si 0.909 3.091 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.226 4.226 21 C -0.074 4.074 22 C 0.046 3.954 23 N -0.310 5.310 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.282 0.718 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 -8.223 -3.276 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.022 3.978 5 N -0.163 5.163 6 C -0.124 4.124 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.105 4.105 10 C -0.187 4.187 11 C 0.110 3.890 12 C -0.485 4.485 13 H 0.097 0.903 14 C -0.144 4.144 15 N -0.412 5.412 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.246 4.246 21 C -0.092 4.092 22 C -0.140 4.140 23 N -0.132 5.132 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.187 0.813 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.055 -9.219 -4.002 15.695 hybrid contribution 0.907 0.948 1.162 1.753 sum -11.147 -8.271 -2.841 14.168 Atomic orbital electron populations 1.22752 0.80336 1.02840 1.00292 1.87772 1.20290 1.27448 1.95598 1.22719 0.93184 0.84822 1.01877 1.21206 0.91960 0.79984 1.04651 1.47923 1.35012 1.11271 1.22103 1.22685 0.96643 0.96085 0.97036 1.19418 1.02862 0.93486 0.98179 1.17426 1.04214 0.93743 1.00046 1.20387 0.97233 0.97564 0.95354 1.20967 1.00509 0.95468 1.01714 1.17666 0.89821 0.92269 0.89284 1.19571 1.09612 0.94797 1.24471 0.90330 1.25957 0.96595 0.95299 0.96537 1.69834 1.23260 1.14634 1.33424 0.86353 0.79007 0.80567 0.80757 1.18751 1.20305 1.18939 1.20659 1.05279 0.99585 0.99057 1.20235 0.97799 0.93181 0.98008 1.23903 0.95864 0.97340 0.96894 1.76918 1.25134 0.97062 1.14062 0.93851 0.89380 0.93903 0.92713 0.91694 0.89430 0.88140 0.81321 0.89636 0.86516 0.90691 0.88930 0.89323 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.24 10.70 -35.23 -0.38 -4.62 16 3 C 0.05 0.58 6.12 37.16 0.23 0.80 16 4 C 0.14 1.69 6.86 -4.04 -0.03 1.66 16 5 N -0.38 -5.84 3.66 -60.75 -0.22 -6.07 16 6 C 0.02 0.31 10.88 -16.44 -0.18 0.13 16 7 C -0.13 -2.48 6.08 -104.95 -0.64 -3.12 16 8 C -0.15 -3.34 5.90 -104.61 -0.62 -3.96 16 9 C -0.09 -1.99 9.50 -39.66 -0.38 -2.36 16 10 C -0.17 -4.26 8.63 -39.28 -0.34 -4.59 16 11 C 0.11 2.94 5.57 -106.80 -0.60 2.35 16 12 C -0.46 -11.83 9.03 -37.89 -0.34 -12.17 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 14 C 0.07 1.84 5.13 -17.33 -0.09 1.75 16 15 N -0.79 -19.90 10.96 55.55 0.61 -19.29 16 16 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 C -0.23 -5.47 9.73 -39.28 -0.38 -5.85 16 21 C -0.07 -1.63 9.51 -39.66 -0.38 -2.01 16 22 C 0.05 0.81 11.42 -17.02 -0.19 0.61 16 23 N -0.31 -5.32 12.34 30.83 0.38 -4.94 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.98 8.06 -51.93 -0.42 0.56 16 31 H 0.17 2.44 7.30 -52.48 -0.38 2.05 16 32 H 0.09 1.73 7.01 -52.48 -0.37 1.37 16 33 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 34 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 36 H 0.09 1.70 7.03 -52.49 -0.37 1.33 16 37 H 0.18 2.72 7.34 -52.49 -0.39 2.33 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -28.92 319.97 -7.39 -36.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.76 Total: 5.98 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.82 Total: -25.38 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.77 Total: -30.30 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.38 Total: -4.62 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.92 -7.39 -36.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240625959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.362 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds