Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42908 * 114.00065 * 2 1 4 4 C 1.52997 * 109.47089 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47108 * 180.02562 * 4 3 2 6 6 C 1.34697 * 125.81908 * 125.00216 * 5 4 3 7 7 C 1.37852 * 107.39178 * 180.02562 * 6 5 4 8 8 C 1.48003 * 126.36571 * 179.97438 * 7 6 5 9 9 C 1.39951 * 119.87888 * 359.72333 * 8 7 6 10 10 C 1.36231 * 120.11839 * 179.76262 * 9 8 7 11 11 C 1.40945 * 119.87942 * 0.48723 * 10 9 8 12 12 C 1.41021 * 120.11925 * 179.74293 * 11 10 9 13 13 H 1.08000 * 119.99947 * 204.71514 * 12 11 10 14 14 C 1.39948 * 119.99842 * 24.71267 * 12 11 10 15 15 N 1.30844 * 119.99956 * 17.96457 * 14 12 11 16 16 Si 1.86794 * 119.99763 * 197.96564 * 14 12 11 17 17 H 1.48501 * 109.47182 * 59.99791 * 16 14 12 18 18 H 1.48494 * 109.47028 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47100 * 300.00065 * 16 14 12 20 20 C 1.40935 * 119.76180 * 359.76222 * 11 10 9 21 21 C 1.36233 * 119.88402 * 0.02562 * 20 11 10 22 22 C 1.41090 * 107.26905 * 0.22322 * 7 6 5 23 23 N 1.30544 * 108.11775 * 359.61590 * 22 7 6 24 24 H 1.09005 * 109.47330 * 60.00172 * 1 2 3 25 25 H 1.09006 * 109.47390 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47315 * 299.99791 * 1 2 3 27 27 H 1.09001 * 109.46649 * 59.99706 * 3 2 1 28 28 H 1.08993 * 109.46964 * 300.00290 * 3 2 1 29 29 H 1.09001 * 109.47516 * 60.00358 * 4 3 2 30 30 H 1.09002 * 109.47543 * 300.00258 * 4 3 2 31 31 H 1.08004 * 126.30140 * 0.03287 * 6 5 4 32 32 H 1.08006 * 119.94289 * 359.97438 * 9 8 7 33 33 H 1.08000 * 120.06288 * 180.25088 * 10 9 8 34 34 H 0.96998 * 119.99674 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.06128 * 179.97438 * 20 11 10 36 36 H 1.07996 * 119.94368 * 179.97438 * 21 20 11 37 37 H 1.08002 * 125.93971 * 179.75364 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0238 2.9881 0.8965 7 6 5.3272 4.2848 0.5403 8 6 6.2653 5.1905 1.2404 9 6 6.9376 4.7484 2.3854 10 6 7.8059 5.5764 3.0308 11 6 8.0188 6.8838 2.5493 12 6 8.9123 7.7469 3.2166 13 1 8.7975 8.8171 3.1273 14 6 9.9477 7.2167 3.9946 15 7 10.3132 5.9705 3.8357 16 14 10.8080 8.2883 5.2599 17 1 9.8182 8.7671 6.2581 18 1 11.8602 7.4963 5.9460 19 1 11.4297 9.4535 4.5811 20 6 7.3351 7.3256 1.3988 21 6 6.4723 6.4881 0.7584 22 6 4.5727 4.5900 -0.6122 23 7 3.8697 3.5364 -0.9280 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4276 2.4450 1.7382 32 1 6.7704 3.7478 2.7562 33 1 8.3273 5.2329 3.9120 34 1 11.0306 5.6029 4.3752 35 1 7.4942 8.3266 1.0259 36 1 5.9476 6.8257 -0.1230 37 1 4.5778 5.5310 -1.1423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240625959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 28.262025 kcal Electronic energy + Delta-G solvation = -19248.606526 eV Core-core repulsion = 16184.555336 eV Total energy + Delta-G solvation = -3064.051189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98476 -39.27811 -38.92712 -35.74658 -34.67670 -32.50812 -31.32745 -30.73221 -29.50706 -27.35767 -26.40511 -24.48045 -23.15554 -22.93213 -20.95239 -20.91730 -19.19595 -18.33470 -17.36382 -17.19125 -16.87951 -16.38408 -15.87813 -15.74139 -15.35879 -15.18737 -14.78821 -14.39862 -14.19882 -13.92005 -13.48790 -13.46189 -13.20903 -12.82261 -12.76897 -12.71034 -12.40241 -12.33596 -12.24865 -11.75694 -11.30758 -11.15984 -11.04002 -10.77582 -10.34875 -10.07562 -9.37210 -8.68037 -8.45216 -6.21036 0.62156 1.09289 1.26975 1.39949 1.46696 1.48111 1.52473 2.15459 2.23567 2.78687 2.90350 3.62495 3.87289 3.88831 4.00614 4.04407 4.22279 4.42276 4.46412 4.50605 4.56692 4.58993 4.64254 4.67296 4.81164 4.84093 4.92867 5.12106 5.20527 5.43459 5.51755 5.67509 5.78599 5.96809 6.08225 6.16462 6.20490 6.32330 6.42531 6.73432 6.79628 6.97045 7.09733 8.34307 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.003067 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.027604 B = 9128.162675 C = 9533.784322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.060 3.940 4 C 0.136 3.864 5 N -0.370 5.370 6 C 0.042 3.958 7 C -0.172 4.172 8 C -0.136 4.136 9 C -0.095 4.095 10 C -0.189 4.189 11 C 0.076 3.924 12 C -0.496 4.496 13 H 0.075 0.925 14 C 0.035 3.965 15 N -0.822 5.822 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.241 4.241 21 C -0.082 4.082 22 C 0.046 3.954 23 N -0.322 5.322 24 H 0.048 0.952 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.195 0.805 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.288 0.712 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -9.596 -3.509 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.017 4.017 4 C 0.015 3.985 5 N -0.154 5.154 6 C -0.104 4.104 7 C -0.183 4.183 8 C -0.138 4.138 9 C -0.114 4.114 10 C -0.208 4.208 11 C 0.074 3.926 12 C -0.526 4.526 13 H 0.093 0.907 14 C -0.181 4.181 15 N -0.447 5.447 16 Si 0.802 3.198 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.260 4.260 21 C -0.100 4.100 22 C -0.140 4.140 23 N -0.143 5.143 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.211 0.789 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.330 -10.614 -4.267 17.566 hybrid contribution 1.046 1.142 1.075 1.886 sum -12.283 -9.472 -3.192 15.836 Atomic orbital electron populations 1.22976 0.78758 1.04320 1.00875 1.87748 1.22008 1.26967 1.95660 1.22531 0.92790 0.85105 1.01313 1.21549 0.92334 0.78185 1.06393 1.48244 1.34091 1.12050 1.20966 1.23076 0.95156 0.95309 0.96821 1.19344 1.04549 0.94530 0.99880 1.17722 1.03086 0.93974 0.99014 1.20653 0.96694 0.98401 0.95609 1.20952 1.01807 0.96022 1.02022 1.18016 0.91006 0.93075 0.90496 1.19786 1.11137 0.94770 1.26870 0.90663 1.26764 0.96809 0.96620 0.97866 1.69884 1.24135 1.16210 1.34499 0.85265 0.77895 0.78721 0.77920 1.18523 1.19172 1.18433 1.20868 1.05870 1.00348 0.98962 1.20562 0.97487 0.93175 0.98788 1.24168 0.95215 0.98178 0.96395 1.76924 1.25340 0.97359 1.14706 0.93334 0.87541 0.93267 0.92934 0.92646 0.88490 0.85665 0.78867 0.87147 0.88086 0.90089 0.88438 0.86357 0.78774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.71 10.70 -148.98 -1.59 -9.30 16 3 C 0.06 1.19 6.12 71.98 0.44 1.63 16 4 C 0.14 2.74 6.86 86.38 0.59 3.33 16 5 N -0.37 -10.30 3.66 -346.11 -1.27 -11.57 16 6 C 0.04 1.27 10.88 84.16 0.92 2.19 16 7 C -0.17 -6.24 6.08 -20.08 -0.12 -6.36 16 8 C -0.14 -5.84 5.90 -19.86 -0.12 -5.96 16 9 C -0.10 -4.34 9.50 22.22 0.21 -4.13 16 10 C -0.19 -9.89 8.63 22.47 0.19 -9.69 16 11 C 0.08 4.16 5.57 -21.27 -0.12 4.04 16 12 C -0.50 -26.88 9.03 23.37 0.21 -26.67 16 13 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 14 C 0.03 1.75 5.13 85.25 0.44 2.18 16 15 N -0.82 -42.87 10.96 21.83 0.24 -42.63 16 16 Si 0.98 38.04 29.60 68.60 2.03 40.07 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 20 C -0.24 -11.91 9.73 22.46 0.22 -11.69 16 21 C -0.08 -3.59 9.51 22.22 0.21 -3.38 16 22 C 0.05 1.51 11.42 85.58 0.98 2.48 16 23 N -0.32 -10.23 12.34 -56.36 -0.70 -10.92 16 24 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.13 1.94 8.06 -2.39 -0.02 1.92 16 31 H 0.19 4.83 7.30 -2.91 -0.02 4.80 16 32 H 0.11 4.33 7.01 -2.91 -0.02 4.31 16 33 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 34 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 35 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.12 4.37 7.03 -2.91 -0.02 4.35 16 37 H 0.20 5.49 7.34 -2.91 -0.02 5.46 16 Total: -1.00 -63.49 319.97 5.08 -58.41 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.07 Total: 26.37 kcal Atomic # 6 Polarization: -55.72 SS G_CDS: 5.30 Total: -50.42 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -1.72 Total: -65.12 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -1.59 Total: -9.30 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -63.49 5.08 -58.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240625959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.673 kcal (2) G-P(sol) polarization free energy of solvation -63.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds