Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00214 * 2 1 4 4 C 1.52999 * 109.46935 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46611 * 179.97438 * 4 3 2 6 6 C 1.34830 * 125.88816 * 125.00394 * 5 4 3 7 7 C 1.36439 * 107.60521 * 180.24237 * 6 5 4 8 8 C 1.48490 * 126.21776 * 179.75770 * 7 6 5 9 9 C 1.39703 * 119.99532 * 359.72700 * 8 7 6 10 10 C 1.38407 * 120.37551 * 179.72126 * 9 8 7 11 11 C 1.37714 * 120.37467 * 0.55148 * 10 9 8 12 12 C 1.40755 * 119.98314 * 359.72335 * 11 10 9 13 13 C 1.41413 * 120.18710 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00153 * 150.17923 * 13 12 11 15 15 C 1.39926 * 120.00334 * 330.17696 * 13 12 11 16 16 N 1.30834 * 120.00263 * 161.73410 * 15 13 12 17 17 Si 1.86801 * 120.00030 * 341.73450 * 15 13 12 18 18 H 1.48499 * 109.47231 * 95.41185 * 17 15 13 19 19 H 1.48497 * 109.47410 * 215.41211 * 17 15 13 20 20 H 1.48510 * 109.46964 * 335.41376 * 17 15 13 21 21 C 1.38689 * 119.99388 * 179.97438 * 8 7 6 22 22 C 1.40835 * 107.55618 * 359.61706 * 7 6 5 23 23 N 1.30676 * 108.10092 * 0.38686 * 22 7 6 24 24 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47378 * 300.00263 * 1 2 3 26 26 H 1.09001 * 109.46969 * 59.99998 * 1 2 3 27 27 H 1.08999 * 109.46780 * 59.99595 * 3 2 1 28 28 H 1.08996 * 109.46787 * 299.99515 * 3 2 1 29 29 H 1.08999 * 109.47331 * 60.00405 * 4 3 2 30 30 H 1.08996 * 109.47374 * 299.99629 * 4 3 2 31 31 H 1.07994 * 126.20066 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.81098 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.80684 * 180.27784 * 10 9 8 34 34 H 1.07998 * 120.00722 * 179.70163 * 11 10 9 35 35 H 0.97006 * 119.99956 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.18293 * 0.02767 * 21 8 7 37 37 H 1.08009 * 125.94873 * 180.14853 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0248 2.9907 0.8948 7 6 5.3235 4.2757 0.5467 8 6 6.2614 5.1817 1.2568 9 6 6.9298 4.7380 2.4006 10 6 7.8101 5.5739 3.0653 11 6 8.0286 6.8562 2.6133 12 6 7.3591 7.3212 1.4658 13 6 7.5806 8.6371 0.9976 14 1 7.4941 8.8570 -0.0563 15 6 7.9119 9.6542 1.8995 16 7 8.4590 10.7607 1.4657 17 14 7.5731 9.4324 3.7231 18 1 8.7985 8.9333 4.3972 19 1 7.1782 10.7356 4.3154 20 1 6.4730 8.4517 3.9065 21 6 6.4700 6.4700 0.7875 22 6 4.5828 4.5854 -0.6105 23 7 3.8712 3.5369 -0.9297 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4277 2.4482 1.7373 32 1 6.7616 3.7356 2.7657 33 1 8.3253 5.2198 3.9460 34 1 8.7132 7.5050 3.1394 35 1 8.6890 11.4657 2.0911 36 1 5.9514 6.8174 -0.0938 37 1 4.5973 5.5270 -1.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240628124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 46.649944 kcal Electronic energy + Delta-G solvation = -19389.283396 eV Core-core repulsion = 16326.029567 eV Total energy + Delta-G solvation = -3063.253829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96672 -38.28773 -37.60257 -34.06929 -33.46382 -31.30125 -30.20271 -29.77447 -27.75329 -26.34499 -25.10209 -23.56132 -22.12950 -21.19982 -19.77681 -19.62029 -17.60820 -16.95621 -16.55262 -16.11437 -15.66920 -15.45781 -14.75359 -14.52024 -14.02116 -13.91470 -13.49551 -13.40658 -12.79299 -12.50764 -12.41446 -12.24304 -11.96468 -11.82173 -11.67385 -11.46382 -10.87460 -10.75395 -10.58988 -10.22238 -10.06002 -9.78210 -9.51953 -9.26033 -9.18276 -8.77707 -7.63845 -6.98928 -6.90170 -4.45045 1.86256 2.38617 2.44946 2.66102 3.13667 3.24794 3.33694 3.51773 3.57477 4.02549 4.44066 4.61348 4.64223 4.93363 4.98505 4.99619 5.04109 5.11082 5.29303 5.40069 5.43698 5.49513 5.74374 5.87216 6.09315 6.16156 6.26834 6.55017 6.66068 6.71849 6.89449 7.01012 7.12149 7.22575 7.45693 7.64462 7.76919 7.89378 7.93353 8.15752 8.40073 8.69266 8.85129 10.12373 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037004 B = 0.003389 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.494205 B = 8259.055809 C = 8456.217479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.051 3.949 4 C 0.143 3.857 5 N -0.380 5.380 6 C 0.054 3.946 7 C -0.167 4.167 8 C 0.020 3.980 9 C -0.235 4.235 10 C -0.078 4.078 11 C -0.239 4.239 12 C 0.095 3.905 13 C -0.450 4.450 14 H 0.090 0.910 15 C 0.084 3.916 16 N -0.812 5.812 17 Si 0.911 3.089 18 H -0.271 1.271 19 H -0.293 1.293 20 H -0.244 1.244 21 C -0.195 4.195 22 C 0.065 3.935 23 N -0.306 5.306 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.284 0.716 36 H 0.102 0.898 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 -15.897 0.299 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.027 4.027 4 C 0.021 3.979 5 N -0.164 5.164 6 C -0.090 4.090 7 C -0.178 4.178 8 C 0.018 3.982 9 C -0.255 4.255 10 C -0.096 4.096 11 C -0.259 4.259 12 C 0.092 3.908 13 C -0.479 4.479 14 H 0.108 0.892 15 C -0.134 4.134 16 N -0.436 5.436 17 Si 0.738 3.262 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.167 1.167 21 C -0.215 4.215 22 C -0.121 4.121 23 N -0.126 5.126 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.191 0.809 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.370 -16.444 -0.540 20.000 hybrid contribution 0.392 0.680 1.432 1.633 sum -10.978 -15.764 0.891 19.231 Atomic orbital electron populations 1.22760 0.80204 1.02905 1.00361 1.87768 1.20392 1.27304 1.95612 1.22705 0.92991 0.84967 1.02010 1.21260 0.92175 0.79649 1.04852 1.48166 1.34641 1.11560 1.22022 1.22496 0.94818 0.95669 0.96025 1.19246 1.04993 0.94098 0.99463 1.17730 0.94260 0.92208 0.93982 1.20286 1.05921 0.99229 1.00052 1.20499 0.97103 0.94191 0.97802 1.21061 1.06046 0.96196 1.02577 1.17642 0.88956 0.93488 0.90709 1.19460 1.40048 0.91467 0.96915 0.89188 1.26131 0.90845 0.94553 1.01854 1.69708 1.28971 1.06466 1.38491 0.86323 0.80927 0.77469 0.81521 1.19760 1.22018 1.16713 1.20975 1.03176 0.93833 1.03496 1.24063 0.94475 0.97556 0.96040 1.77139 1.24708 0.96987 1.13796 0.89324 0.93874 0.93770 0.92658 0.91579 0.89162 0.87987 0.80916 0.89094 0.88870 0.88356 0.90574 0.88028 0.79686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.90 10.70 -35.23 -0.38 -4.27 16 3 C 0.05 0.52 6.12 37.16 0.23 0.74 16 4 C 0.14 1.47 6.87 -4.04 -0.03 1.44 16 5 N -0.38 -5.32 3.67 -61.10 -0.22 -5.54 16 6 C 0.05 0.80 10.83 -16.88 -0.18 0.62 16 7 C -0.17 -2.98 6.04 -105.34 -0.64 -3.62 16 8 C 0.02 0.41 5.87 -104.96 -0.62 -0.21 16 9 C -0.24 -4.75 9.57 -38.97 -0.37 -5.13 16 10 C -0.08 -1.66 10.01 -39.71 -0.40 -2.06 16 11 C -0.24 -5.76 7.17 -38.82 -0.28 -6.04 16 12 C 0.09 2.40 5.10 -106.87 -0.55 1.85 16 13 C -0.45 -12.16 9.57 -37.74 -0.36 -12.52 16 14 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 15 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 16 N -0.81 -21.77 13.93 55.55 0.77 -21.00 16 17 Si 0.91 20.93 24.52 -169.99 -4.17 16.76 16 18 H -0.27 -6.05 6.71 56.52 0.38 -5.67 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.24 -5.74 6.87 56.52 0.39 -5.36 16 21 C -0.20 -4.48 9.32 -38.55 -0.36 -4.84 16 22 C 0.07 1.10 11.41 -17.06 -0.19 0.91 16 23 N -0.31 -4.93 12.38 30.80 0.38 -4.55 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.17 2.07 7.27 -52.49 -0.38 1.69 16 32 H 0.09 1.56 6.99 -52.49 -0.37 1.19 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 35 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 36 H 0.10 2.18 7.03 -52.49 -0.37 1.82 16 37 H 0.19 2.81 7.34 -52.48 -0.39 2.43 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -29.71 314.84 -6.32 -36.02 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.72 Total: 3.20 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.73 Total: -25.36 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.93 Total: -31.09 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.38 Total: -4.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.71 -6.32 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240628124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.673 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds