Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00214 * 2 1 4 4 C 1.52999 * 109.46935 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46611 * 179.97438 * 4 3 2 6 6 C 1.34830 * 125.88816 * 125.00394 * 5 4 3 7 7 C 1.36439 * 107.60521 * 180.24237 * 6 5 4 8 8 C 1.48490 * 126.21776 * 179.75770 * 7 6 5 9 9 C 1.39703 * 119.99532 * 359.72700 * 8 7 6 10 10 C 1.38407 * 120.37551 * 179.72126 * 9 8 7 11 11 C 1.37714 * 120.37467 * 0.55148 * 10 9 8 12 12 C 1.40755 * 119.98314 * 359.72335 * 11 10 9 13 13 C 1.41413 * 120.18710 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00153 * 150.17923 * 13 12 11 15 15 C 1.39926 * 120.00334 * 330.17696 * 13 12 11 16 16 N 1.30834 * 120.00263 * 161.73410 * 15 13 12 17 17 Si 1.86801 * 120.00030 * 341.73450 * 15 13 12 18 18 H 1.48499 * 109.47231 * 95.41185 * 17 15 13 19 19 H 1.48497 * 109.47410 * 215.41211 * 17 15 13 20 20 H 1.48510 * 109.46964 * 335.41376 * 17 15 13 21 21 C 1.38689 * 119.99388 * 179.97438 * 8 7 6 22 22 C 1.40835 * 107.55618 * 359.61706 * 7 6 5 23 23 N 1.30676 * 108.10092 * 0.38686 * 22 7 6 24 24 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47378 * 300.00263 * 1 2 3 26 26 H 1.09001 * 109.46969 * 59.99998 * 1 2 3 27 27 H 1.08999 * 109.46780 * 59.99595 * 3 2 1 28 28 H 1.08996 * 109.46787 * 299.99515 * 3 2 1 29 29 H 1.08999 * 109.47331 * 60.00405 * 4 3 2 30 30 H 1.08996 * 109.47374 * 299.99629 * 4 3 2 31 31 H 1.07994 * 126.20066 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.81098 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.80684 * 180.27784 * 10 9 8 34 34 H 1.07998 * 120.00722 * 179.70163 * 11 10 9 35 35 H 0.97006 * 119.99956 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.18293 * 0.02767 * 21 8 7 37 37 H 1.08009 * 125.94873 * 180.14853 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0248 2.9907 0.8948 7 6 5.3235 4.2757 0.5467 8 6 6.2614 5.1817 1.2568 9 6 6.9298 4.7380 2.4006 10 6 7.8101 5.5739 3.0653 11 6 8.0286 6.8562 2.6133 12 6 7.3591 7.3212 1.4658 13 6 7.5806 8.6371 0.9976 14 1 7.4941 8.8570 -0.0563 15 6 7.9119 9.6542 1.8995 16 7 8.4590 10.7607 1.4657 17 14 7.5731 9.4324 3.7231 18 1 8.7985 8.9333 4.3972 19 1 7.1782 10.7356 4.3154 20 1 6.4730 8.4517 3.9065 21 6 6.4700 6.4700 0.7875 22 6 4.5828 4.5854 -0.6105 23 7 3.8712 3.5369 -0.9297 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4277 2.4482 1.7373 32 1 6.7616 3.7356 2.7657 33 1 8.3253 5.2198 3.9460 34 1 8.7132 7.5050 3.1394 35 1 8.6890 11.4657 2.0911 36 1 5.9514 6.8174 -0.0938 37 1 4.5973 5.5270 -1.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240628124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 28.370483 kcal Electronic energy + Delta-G solvation = -19390.076053 eV Core-core repulsion = 16326.029567 eV Total energy + Delta-G solvation = -3064.046486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18339 -39.39436 -38.94455 -35.62972 -34.82761 -32.88272 -31.90802 -30.88524 -28.98947 -27.10384 -26.94586 -24.51427 -23.66397 -22.68536 -21.25514 -20.98823 -19.14526 -18.19632 -17.61155 -17.30753 -16.81031 -16.47012 -16.31308 -15.66103 -15.58546 -15.26412 -14.80226 -14.59517 -14.38230 -13.97915 -13.80120 -13.70414 -13.27227 -12.98737 -12.74563 -12.57848 -12.53159 -12.32620 -12.16457 -11.71714 -11.55193 -11.27924 -10.99177 -10.77751 -10.43931 -10.28412 -9.44489 -8.84736 -8.51682 -6.45264 0.48168 0.88697 1.02197 1.28753 1.40384 1.44727 1.51549 2.03067 2.17767 2.75598 2.78361 3.57241 3.66313 3.87740 3.93986 3.98080 4.22517 4.31461 4.41382 4.45159 4.46949 4.53288 4.63757 4.65286 4.75539 4.81748 4.82498 4.86137 5.05547 5.20099 5.39268 5.56919 5.71577 5.89083 5.96516 5.98213 6.08989 6.10968 6.33881 6.48596 6.68321 6.81995 6.90829 8.24511 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037004 B = 0.003389 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.494205 B = 8259.055809 C = 8456.217479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.057 3.943 4 C 0.136 3.864 5 N -0.370 5.370 6 C 0.085 3.915 7 C -0.209 4.209 8 C 0.027 3.973 9 C -0.218 4.218 10 C -0.081 4.081 11 C -0.258 4.258 12 C 0.074 3.926 13 C -0.489 4.489 14 H 0.053 0.947 15 C 0.046 3.954 16 N -0.857 5.857 17 Si 0.967 3.033 18 H -0.258 1.258 19 H -0.281 1.281 20 H -0.253 1.253 21 C -0.216 4.216 22 C 0.055 3.945 23 N -0.321 5.321 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.214 0.786 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.291 0.709 36 H 0.098 0.902 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 -19.939 2.516 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.020 4.020 4 C 0.015 3.985 5 N -0.153 5.153 6 C -0.062 4.062 7 C -0.220 4.220 8 C 0.026 3.974 9 C -0.237 4.237 10 C -0.099 4.099 11 C -0.277 4.277 12 C 0.072 3.928 13 C -0.520 4.520 14 H 0.071 0.929 15 C -0.168 4.168 16 N -0.484 5.484 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.176 1.176 21 C -0.235 4.235 22 C -0.131 4.131 23 N -0.142 5.142 24 H 0.125 0.875 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.230 0.770 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.365 -20.508 1.652 24.004 hybrid contribution 0.528 1.546 0.648 1.758 sum -11.836 -18.962 2.300 22.471 Atomic orbital electron populations 1.22969 0.78824 1.04310 1.00821 1.87745 1.21910 1.26878 1.95654 1.22549 0.93024 0.85166 1.01293 1.21621 0.92133 0.77809 1.06904 1.48488 1.33785 1.12165 1.20856 1.22980 0.92963 0.94368 0.95870 1.19148 1.06650 0.95462 1.00775 1.17991 0.93935 0.91494 0.93975 1.20856 1.03534 1.00811 0.98524 1.20932 0.97126 0.92956 0.98857 1.21175 1.06394 0.97776 1.02398 1.17784 0.89976 0.93051 0.92003 1.19446 1.43487 0.93423 0.95597 0.92919 1.26812 0.90439 0.94051 1.05467 1.69745 1.31138 1.07559 1.39976 0.85460 0.80757 0.77557 0.77111 1.18301 1.20785 1.17640 1.21115 1.03462 0.95183 1.03782 1.24156 0.94699 0.98037 0.96236 1.77131 1.24923 0.97384 1.14782 0.87523 0.93226 0.93533 0.92766 0.93011 0.88346 0.84733 0.76987 0.84533 0.85204 0.88890 0.89832 0.88391 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.84 10.70 -148.98 -1.59 -8.43 16 3 C 0.06 1.01 6.12 71.98 0.44 1.45 16 4 C 0.14 2.24 6.87 86.38 0.59 2.83 16 5 N -0.37 -9.00 3.67 -347.23 -1.27 -10.27 16 6 C 0.08 2.11 10.83 83.81 0.91 3.02 16 7 C -0.21 -6.94 6.04 -20.33 -0.12 -7.06 16 8 C 0.03 1.08 5.87 -20.08 -0.12 0.97 16 9 C -0.22 -7.85 9.57 22.66 0.22 -7.64 16 10 C -0.08 -3.17 10.01 22.19 0.22 -2.95 16 11 C -0.26 -12.24 7.17 22.76 0.16 -12.08 16 12 C 0.07 3.86 5.10 -21.32 -0.11 3.75 16 13 C -0.49 -28.28 9.57 23.46 0.22 -28.06 16 14 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 15 C 0.05 2.52 5.40 85.25 0.46 2.98 16 16 N -0.86 -48.48 13.93 21.82 0.30 -48.18 16 17 Si 0.97 43.92 24.52 68.60 1.68 45.61 16 18 H -0.26 -10.98 6.71 99.48 0.67 -10.32 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.25 -11.67 6.87 99.48 0.68 -10.98 16 21 C -0.22 -10.12 9.32 22.94 0.21 -9.91 16 22 C 0.05 1.80 11.41 85.50 0.98 2.78 16 23 N -0.32 -9.81 12.38 -56.46 -0.70 -10.51 16 24 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.41 8.07 -2.39 -0.02 1.40 16 31 H 0.21 3.50 7.27 -2.91 -0.02 3.48 16 32 H 0.14 3.68 6.99 -2.91 -0.02 3.66 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.09 4.44 4.72 -2.91 -0.01 4.42 16 35 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 36 H 0.10 4.49 7.03 -2.91 -0.02 4.47 16 37 H 0.19 5.81 7.34 -2.91 -0.02 5.79 16 Total: -1.00 -67.54 314.84 4.74 -62.80 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.01 Total: 17.35 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 5.32 Total: -48.36 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.67 Total: -68.96 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -1.59 Total: -8.43 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.61 kcal Total: -67.54 4.74 -62.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240628124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.172 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds