Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99892 * 2 1 4 4 C 1.53001 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47085 * 179.97438 * 4 3 2 6 6 C 1.34698 * 125.80552 * 125.00138 * 5 4 3 7 7 C 1.37912 * 107.38061 * 179.97438 * 6 5 4 8 8 C 1.47890 * 126.37344 * 179.97438 * 7 6 5 9 9 C 1.39190 * 120.33541 * 310.04682 * 8 7 6 10 10 C 1.38044 * 119.98319 * 180.02562 * 9 8 7 11 11 C 1.38949 * 120.67856 * 0.02562 * 10 9 8 12 12 C 1.36409 * 120.68811 * 359.97438 * 11 10 9 13 13 C 1.40762 * 119.98839 * 359.72332 * 12 11 10 14 14 C 1.40873 * 120.33305 * 180.30137 * 13 12 11 15 15 H 1.08000 * 120.00063 * 153.69166 * 14 13 12 16 16 C 1.40015 * 120.00205 * 333.69167 * 14 13 12 17 17 N 1.30815 * 119.99749 * 343.61310 * 16 14 13 18 18 Si 1.86796 * 119.99956 * 163.61095 * 16 14 13 19 19 H 1.48511 * 109.46787 * 90.00049 * 18 16 14 20 20 H 1.48495 * 109.47238 * 209.99969 * 18 16 14 21 21 H 1.48493 * 109.47578 * 330.00524 * 18 16 14 22 22 C 1.41126 * 107.25093 * 359.97438 * 7 6 5 23 23 N 1.30545 * 108.12057 * 359.97438 * 22 7 6 24 24 H 1.09003 * 109.46600 * 60.00327 * 1 2 3 25 25 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47335 * 300.00221 * 1 2 3 27 27 H 1.08997 * 109.47482 * 59.99968 * 3 2 1 28 28 H 1.09004 * 109.47425 * 299.99724 * 3 2 1 29 29 H 1.08998 * 109.47329 * 60.00178 * 4 3 2 30 30 H 1.08994 * 109.47399 * 299.99903 * 4 3 2 31 31 H 1.07997 * 126.31181 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.00887 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.65946 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.65844 * 179.97438 * 11 10 9 35 35 H 1.07996 * 120.01078 * 180.02562 * 12 11 10 36 36 H 0.97000 * 119.99786 * 179.97438 * 17 16 14 37 37 H 1.08005 * 125.94157 * 180.26600 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0239 2.9887 0.8949 7 6 5.3282 4.2853 0.5368 8 6 6.2660 5.1909 1.2351 9 6 6.1722 5.3746 2.6117 10 6 7.0510 6.2221 3.2560 11 6 8.0338 6.8990 2.5442 12 6 8.1505 6.7394 1.1945 13 6 7.2735 5.8773 0.5096 14 6 7.3916 5.7022 -0.8832 15 1 7.0523 4.7857 -1.3430 16 6 7.9487 6.7163 -1.6716 17 7 8.0634 7.9283 -1.1930 18 14 8.5283 6.3385 -3.4068 19 1 7.4100 6.5535 -4.3600 20 1 9.6576 7.2364 -3.7580 21 1 8.9777 4.9252 -3.4819 22 6 4.5783 4.5870 -0.6200 23 7 3.8715 3.5346 -0.9316 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4270 2.4466 1.7375 32 1 5.4117 4.8548 3.1754 33 1 6.9733 6.3610 4.3242 34 1 8.7123 7.5583 3.0649 35 1 8.9186 7.2705 0.6522 36 1 8.4497 8.6308 -1.7391 37 1 4.5908 5.5239 -1.1571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240630008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = 46.752107 kcal Electronic energy + Delta-G solvation = -19873.111390 eV Core-core repulsion = 16809.861991 eV Total energy + Delta-G solvation = -3063.249399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41528 -38.10437 -37.32736 -33.64683 -33.53164 -30.84998 -29.70431 -29.22740 -27.45929 -26.19691 -25.10743 -23.28488 -21.47459 -20.91620 -19.76154 -19.09823 -17.31679 -16.93349 -16.31872 -15.88117 -15.38236 -15.19555 -14.53321 -14.26009 -13.77911 -13.50470 -13.40371 -13.00022 -12.59074 -12.27098 -12.11543 -11.83910 -11.66211 -11.50134 -11.46772 -11.16059 -11.04321 -10.72194 -10.45827 -10.10950 -9.88216 -9.61253 -9.37686 -9.16305 -8.78424 -8.03178 -7.35912 -7.00110 -6.69563 -4.30641 2.36764 2.76950 2.81015 2.95581 3.08810 3.14046 3.26680 3.76734 3.80351 3.95061 4.65863 4.70940 4.84798 5.09821 5.14451 5.19669 5.39596 5.44521 5.47156 5.64199 5.71483 5.83776 6.23744 6.31558 6.42366 6.50529 6.71726 6.81042 6.85365 7.10156 7.25884 7.38370 7.41461 7.61321 7.63286 7.96346 8.09344 8.14563 8.31183 8.41117 8.65621 8.91312 9.00844 10.18465 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.004911 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.702615 B = 5700.163154 C = 6950.556712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.147 3.853 5 N -0.384 5.384 6 C 0.023 3.977 7 C -0.122 4.122 8 C -0.141 4.141 9 C -0.078 4.078 10 C -0.244 4.244 11 C -0.106 4.106 12 C -0.159 4.159 13 C 0.127 3.873 14 C -0.449 4.449 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.902 3.098 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.261 1.261 22 C 0.078 3.922 23 N -0.320 5.320 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.166 0.834 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 -9.402 1.477 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.024 3.976 5 N -0.169 5.169 6 C -0.120 4.120 7 C -0.133 4.133 8 C -0.144 4.144 9 C -0.097 4.097 10 C -0.263 4.263 11 C -0.124 4.124 12 C -0.178 4.178 13 C 0.125 3.875 14 C -0.479 4.479 15 H 0.098 0.902 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.108 4.108 23 N -0.141 5.141 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.183 0.817 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.898 -9.975 0.590 13.380 hybrid contribution 0.688 0.578 -0.158 0.912 sum -8.210 -9.397 0.432 12.486 Atomic orbital electron populations 1.22741 0.80467 1.02726 1.00266 1.87767 1.20183 1.27612 1.95598 1.22735 0.93344 0.84664 1.01855 1.21143 0.91792 0.80294 1.04378 1.47914 1.35387 1.11351 1.22257 1.22795 0.96516 0.95788 0.96882 1.19155 1.02639 0.93042 0.98498 1.17956 0.98496 1.05840 0.92115 1.20533 0.97639 0.98089 0.93434 1.20242 1.02422 1.06239 0.97396 1.20441 0.97954 0.99081 0.94951 1.21021 1.01151 1.03050 0.92621 1.17525 0.88070 0.89057 0.92892 1.19503 1.34541 1.01763 0.92049 0.90152 1.25915 0.93298 0.94286 1.00585 1.69820 1.32683 1.01051 1.38120 0.86399 0.79128 0.79768 0.82037 1.19404 1.20163 1.18535 1.24104 0.93595 0.97062 0.96084 1.76974 1.25889 0.97320 1.13909 0.93860 0.89478 0.93975 0.92814 0.91643 0.89616 0.88425 0.81684 0.89582 0.89692 0.89705 0.86573 0.90880 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.58 10.70 -35.23 -0.38 -4.96 16 3 C 0.05 0.63 6.12 37.16 0.23 0.86 16 4 C 0.15 1.89 6.86 -4.04 -0.03 1.87 16 5 N -0.38 -6.55 3.66 -60.73 -0.22 -6.77 16 6 C 0.02 0.42 11.39 -16.41 -0.19 0.24 16 7 C -0.12 -2.62 4.96 -104.97 -0.52 -3.14 16 8 C -0.14 -3.34 5.82 -104.20 -0.61 -3.95 16 9 C -0.08 -1.74 9.71 -39.30 -0.38 -2.12 16 10 C -0.24 -5.40 10.03 -39.39 -0.40 -5.80 16 11 C -0.11 -2.46 9.96 -39.98 -0.40 -2.86 16 12 C -0.16 -4.05 8.62 -39.29 -0.34 -4.39 16 13 C 0.13 3.28 5.58 -106.56 -0.59 2.68 16 14 C -0.45 -11.48 7.75 -37.92 -0.29 -11.77 16 15 H 0.08 2.06 6.71 -52.49 -0.35 1.71 16 16 C 0.08 1.89 5.15 -17.32 -0.09 1.80 16 17 N -0.79 -19.91 10.99 55.55 0.61 -19.30 16 18 Si 0.90 18.63 29.59 -169.99 -5.03 13.60 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 C 0.08 1.63 10.39 -17.00 -0.18 1.45 16 23 N -0.32 -6.26 12.34 30.84 0.38 -5.87 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.04 8.06 -51.93 -0.42 0.62 16 31 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 32 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.12 3.04 6.24 -52.49 -0.33 2.72 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 37 H 0.18 3.83 7.95 -52.48 -0.42 3.41 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -28.35 320.31 -7.36 -35.70 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.88 Total: 6.50 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -2.67 Total: -23.72 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.77 Total: -31.95 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.38 Total: -4.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.35 -7.36 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240630008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.457 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds