Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99892 * 2 1 4 4 C 1.53001 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47085 * 179.97438 * 4 3 2 6 6 C 1.34698 * 125.80552 * 125.00138 * 5 4 3 7 7 C 1.37912 * 107.38061 * 179.97438 * 6 5 4 8 8 C 1.47890 * 126.37344 * 179.97438 * 7 6 5 9 9 C 1.39190 * 120.33541 * 310.04682 * 8 7 6 10 10 C 1.38044 * 119.98319 * 180.02562 * 9 8 7 11 11 C 1.38949 * 120.67856 * 0.02562 * 10 9 8 12 12 C 1.36409 * 120.68811 * 359.97438 * 11 10 9 13 13 C 1.40762 * 119.98839 * 359.72332 * 12 11 10 14 14 C 1.40873 * 120.33305 * 180.30137 * 13 12 11 15 15 H 1.08000 * 120.00063 * 153.69166 * 14 13 12 16 16 C 1.40015 * 120.00205 * 333.69167 * 14 13 12 17 17 N 1.30815 * 119.99749 * 343.61310 * 16 14 13 18 18 Si 1.86796 * 119.99956 * 163.61095 * 16 14 13 19 19 H 1.48511 * 109.46787 * 90.00049 * 18 16 14 20 20 H 1.48495 * 109.47238 * 209.99969 * 18 16 14 21 21 H 1.48493 * 109.47578 * 330.00524 * 18 16 14 22 22 C 1.41126 * 107.25093 * 359.97438 * 7 6 5 23 23 N 1.30545 * 108.12057 * 359.97438 * 22 7 6 24 24 H 1.09003 * 109.46600 * 60.00327 * 1 2 3 25 25 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47335 * 300.00221 * 1 2 3 27 27 H 1.08997 * 109.47482 * 59.99968 * 3 2 1 28 28 H 1.09004 * 109.47425 * 299.99724 * 3 2 1 29 29 H 1.08998 * 109.47329 * 60.00178 * 4 3 2 30 30 H 1.08994 * 109.47399 * 299.99903 * 4 3 2 31 31 H 1.07997 * 126.31181 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.00887 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.65946 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.65844 * 179.97438 * 11 10 9 35 35 H 1.07996 * 120.01078 * 180.02562 * 12 11 10 36 36 H 0.97000 * 119.99786 * 179.97438 * 17 16 14 37 37 H 1.08005 * 125.94157 * 180.26600 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0239 2.9887 0.8949 7 6 5.3282 4.2853 0.5368 8 6 6.2660 5.1909 1.2351 9 6 6.1722 5.3746 2.6117 10 6 7.0510 6.2221 3.2560 11 6 8.0338 6.8990 2.5442 12 6 8.1505 6.7394 1.1945 13 6 7.2735 5.8773 0.5096 14 6 7.3916 5.7022 -0.8832 15 1 7.0523 4.7857 -1.3430 16 6 7.9487 6.7163 -1.6716 17 7 8.0634 7.9283 -1.1930 18 14 8.5283 6.3385 -3.4068 19 1 7.4100 6.5535 -4.3600 20 1 9.6576 7.2364 -3.7580 21 1 8.9777 4.9252 -3.4819 22 6 4.5783 4.5870 -0.6200 23 7 3.8715 3.5346 -0.9316 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4270 2.4466 1.7375 32 1 5.4117 4.8548 3.1754 33 1 6.9733 6.3610 4.3242 34 1 8.7123 7.5583 3.0649 35 1 8.9186 7.2705 0.6522 36 1 8.4497 8.6308 -1.7391 37 1 4.5908 5.5239 -1.1571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240630008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = 31.485043 kcal Electronic energy + Delta-G solvation = -19873.773420 eV Core-core repulsion = 16809.861991 eV Total energy + Delta-G solvation = -3063.911429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89260 -39.20893 -38.87985 -35.47195 -34.79388 -32.50391 -31.42232 -30.60550 -28.88564 -27.19800 -26.84108 -24.42334 -23.10686 -22.68470 -21.20140 -20.70888 -19.09606 -18.16127 -17.27993 -17.21981 -16.82853 -16.32337 -16.10720 -15.58767 -15.37848 -15.00461 -14.86706 -14.36153 -14.17608 -13.73707 -13.71372 -13.29318 -13.02082 -12.84218 -12.74795 -12.62821 -12.43628 -12.31025 -12.14944 -11.66607 -11.38507 -11.12093 -10.99231 -10.76066 -10.23679 -9.68203 -9.20315 -8.73803 -8.46072 -6.19700 0.82445 1.10374 1.21047 1.38869 1.49170 1.54358 1.56086 2.15499 2.22991 2.81427 2.83728 3.67770 3.84445 3.91045 4.11053 4.17471 4.25680 4.46728 4.47778 4.56428 4.59897 4.63369 4.67240 4.79378 4.81733 4.95485 5.09540 5.14830 5.27746 5.42053 5.60032 5.76976 5.81521 6.01142 6.16891 6.20741 6.27264 6.33284 6.49612 6.79803 6.88412 7.05560 7.16151 8.39137 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.004911 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.702615 B = 5700.163154 C = 6950.556712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.138 3.862 5 N -0.372 5.372 6 C 0.050 3.950 7 C -0.163 4.163 8 C -0.141 4.141 9 C -0.085 4.085 10 C -0.239 4.239 11 C -0.114 4.114 12 C -0.187 4.187 13 C 0.095 3.905 14 C -0.472 4.472 15 H 0.070 0.930 16 C 0.041 3.959 17 N -0.824 5.824 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.265 1.265 22 C 0.062 3.938 23 N -0.330 5.330 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.202 0.798 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.286 0.714 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -11.417 2.507 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.017 4.017 4 C 0.017 3.983 5 N -0.156 5.156 6 C -0.096 4.096 7 C -0.175 4.175 8 C -0.144 4.144 9 C -0.103 4.103 10 C -0.258 4.258 11 C -0.133 4.133 12 C -0.206 4.206 13 C 0.093 3.907 14 C -0.502 4.502 15 H 0.088 0.912 16 C -0.174 4.174 17 N -0.450 5.450 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.191 1.191 21 H -0.189 1.189 22 C -0.123 4.123 23 N -0.152 5.152 24 H 0.064 0.936 25 H 0.125 0.875 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.219 0.781 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.865 -12.000 1.616 15.619 hybrid contribution 0.840 1.059 -0.351 1.397 sum -9.025 -10.941 1.265 14.240 Atomic orbital electron populations 1.22974 0.78817 1.04301 1.00828 1.87744 1.21957 1.26907 1.95652 1.22520 0.92868 0.85062 1.01226 1.21527 0.92260 0.78168 1.06312 1.48243 1.34395 1.12000 1.20921 1.23196 0.94922 0.94600 0.96872 1.19175 1.04018 0.94641 0.99621 1.18262 0.97849 1.05291 0.92972 1.20881 0.98207 0.98110 0.93092 1.20638 1.01291 1.04985 0.98933 1.20710 0.98774 0.99475 0.94308 1.21002 1.01603 1.04268 0.93740 1.17866 0.89126 0.90217 0.93508 1.19530 1.36219 1.01854 0.92548 0.91215 1.26578 0.93020 0.93857 1.03952 1.69870 1.33726 1.01784 1.39652 0.85444 0.78840 0.79254 0.77683 1.19004 1.19074 1.18932 1.23916 0.94626 0.97255 0.96474 1.76925 1.25952 0.97571 1.14799 0.93590 0.87467 0.93148 0.92700 0.93107 0.88963 0.85236 0.78140 0.86630 0.86589 0.87733 0.88452 0.90363 0.81490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.36 10.70 -148.98 -1.59 -9.95 16 3 C 0.06 1.35 6.12 71.98 0.44 1.79 16 4 C 0.14 3.14 6.86 86.38 0.59 3.74 16 5 N -0.37 -11.84 3.66 -346.05 -1.27 -13.11 16 6 C 0.05 1.67 11.39 84.18 0.96 2.63 16 7 C -0.16 -6.91 4.96 -20.09 -0.10 -7.01 16 8 C -0.14 -6.67 5.82 -19.59 -0.11 -6.78 16 9 C -0.08 -3.59 9.71 22.45 0.22 -3.38 16 10 C -0.24 -10.13 10.03 22.39 0.22 -9.91 16 11 C -0.11 -5.28 9.96 22.01 0.22 -5.06 16 12 C -0.19 -9.79 8.62 22.46 0.19 -9.60 16 13 C 0.10 5.05 5.58 -21.12 -0.12 4.93 16 14 C -0.47 -25.08 7.75 23.35 0.18 -24.90 16 15 H 0.07 3.73 6.71 -2.91 -0.02 3.71 16 16 C 0.04 2.06 5.15 85.28 0.44 2.50 16 17 N -0.82 -43.07 10.99 21.84 0.24 -42.83 16 18 Si 0.97 39.27 29.59 68.60 2.03 41.30 16 19 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 C 0.06 2.66 10.39 85.59 0.89 3.55 16 23 N -0.33 -12.77 12.34 -56.33 -0.70 -13.46 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.13 2.18 8.06 -2.39 -0.02 2.16 16 31 H 0.20 5.20 8.06 -2.91 -0.02 5.18 16 32 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.10 5.36 6.24 -2.91 -0.02 5.35 16 36 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 37 H 0.17 7.45 7.95 -2.91 -0.02 7.43 16 Total: -1.00 -62.42 320.31 5.05 -57.37 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 1.06 Total: 26.55 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 5.27 Total: -45.86 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.72 Total: -69.40 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.59 Total: -9.95 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -62.42 5.05 -57.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240630008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.856 kcal (2) G-P(sol) polarization free energy of solvation -62.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds