Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47048 * 2 1 4 4 C 1.34868 * 125.89291 * 124.99996 * 3 2 1 5 5 C 1.36443 * 107.59852 * 180.02562 * 4 3 2 6 6 C 1.48465 * 126.22075 * 179.97438 * 5 4 3 7 7 C 1.38507 * 120.08649 * 309.72406 * 6 5 4 8 8 C 1.40645 * 119.57716 * 179.82250 * 7 6 5 9 9 C 1.41228 * 120.12163 * 180.17858 * 8 7 6 10 10 H 1.07999 * 120.00132 * 204.73862 * 9 8 7 11 11 C 1.39855 * 120.00192 * 24.73903 * 9 8 7 12 12 N 1.30906 * 120.00103 * 17.82970 * 11 9 8 13 13 Si 1.86799 * 120.00064 * 197.83114 * 11 9 8 14 14 H 1.48498 * 109.47008 * 59.99788 * 13 11 9 15 15 H 1.48505 * 109.46989 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47137 * 299.99796 * 13 11 9 17 17 C 1.40899 * 119.75415 * 0.40332 * 8 7 6 18 18 C 1.36442 * 120.17143 * 359.82085 * 17 8 7 19 19 C 1.39119 * 120.43147 * 0.02562 * 18 17 8 20 20 O 1.35644 * 119.87714 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00177 * 359.97438 * 20 19 18 22 22 C 1.40849 * 107.55858 * 0.22699 * 5 4 3 23 23 N 1.30675 * 108.10191 * 359.61442 * 22 5 4 24 24 H 1.09003 * 109.47161 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47216 * 299.99583 * 1 2 3 26 26 H 1.08994 * 109.47294 * 59.99764 * 1 2 3 27 27 H 1.09002 * 109.47049 * 240.00086 * 2 1 3 28 28 H 1.08994 * 109.47294 * 120.00236 * 2 1 3 29 29 H 1.07994 * 126.20044 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.21107 * 359.97438 * 7 6 5 31 31 H 0.96994 * 120.00069 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.91708 * 179.79311 * 17 8 7 33 33 H 1.07997 * 119.78470 * 179.97438 * 18 17 8 34 34 H 1.08994 * 109.47467 * 299.99914 * 21 20 19 35 35 H 1.09004 * 109.47049 * 60.00249 * 21 20 19 36 36 H 1.09006 * 109.46925 * 179.97438 * 21 20 19 37 37 H 1.07996 * 125.94762 * 179.77711 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8727 1.9178 0.8950 5 6 3.0725 3.2213 0.5445 6 6 3.9409 4.1965 1.2509 7 6 3.8241 4.3654 2.6206 8 6 4.6548 5.2895 3.2795 9 6 4.5480 5.4682 4.6764 10 1 4.8572 6.3998 5.1268 11 6 4.0418 4.4388 5.4764 12 7 3.9944 3.2145 5.0154 13 14 3.4334 4.8108 7.2029 14 1 2.3211 5.7923 7.1349 15 1 2.9498 3.5585 7.8379 16 1 4.5450 5.3774 8.0082 17 6 5.5906 6.0397 2.5401 18 6 5.6939 5.8685 1.1904 19 6 4.8781 4.9542 0.5316 20 8 4.9900 4.7934 -0.8106 21 6 5.9644 5.5952 -1.4811 22 6 2.3004 3.4750 -0.6059 23 7 1.6782 2.3722 -0.9287 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3174 1.4084 1.7370 30 1 3.1014 3.7894 3.1796 31 1 3.6431 2.5006 5.5701 32 1 6.2274 6.7524 3.0429 33 1 6.4130 6.4471 0.6297 34 1 5.7330 6.6497 -1.3308 35 1 6.9533 5.3790 -1.0769 36 1 5.9504 5.3682 -2.5472 37 1 2.2362 4.4163 -1.1314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240648782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = 54.270292 kcal Electronic energy + Delta-G solvation = -20342.040976 eV Core-core repulsion = 17279.117590 eV Total energy + Delta-G solvation = -3062.923386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52749 -38.58051 -36.25897 -34.22750 -33.26989 -31.11908 -29.75596 -29.03761 -27.47617 -26.66357 -24.58980 -23.56627 -21.62554 -20.74957 -19.82280 -19.31460 -17.36078 -16.79423 -16.14635 -15.28875 -15.08457 -14.74853 -14.60354 -14.15147 -13.77638 -13.44277 -13.05579 -12.68359 -12.56112 -12.27106 -12.01148 -11.99475 -11.82158 -11.49211 -11.27237 -11.21108 -11.03754 -10.75035 -10.60453 -10.26058 -9.96833 -9.75191 -9.36489 -8.99701 -8.83321 -8.17615 -7.21009 -6.88154 -6.62782 -4.22333 2.39078 2.75979 2.89357 2.97715 3.08808 3.11879 3.22338 3.68194 3.97315 4.41385 4.64149 4.74746 5.04921 5.22287 5.44241 5.53263 5.61558 5.69807 5.70534 5.77833 5.83436 5.93086 6.07218 6.12107 6.19474 6.35754 6.52914 6.72856 7.02015 7.14513 7.23049 7.24082 7.48980 7.53087 7.61121 7.83756 8.03240 8.24108 8.30578 8.50934 8.68508 8.93196 9.01183 10.24819 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.006993 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.589824 B = 4003.045445 C = 5930.549370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.383 5.383 4 C 0.055 3.945 5 C -0.156 4.156 6 C -0.023 4.023 7 C -0.119 4.119 8 C 0.087 3.913 9 C -0.464 4.464 10 H 0.075 0.925 11 C 0.077 3.923 12 N -0.801 5.801 13 Si 0.905 3.095 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.267 1.267 17 C -0.193 4.193 18 C -0.170 4.170 19 C 0.010 3.990 20 O -0.323 6.323 21 C 0.037 3.963 22 C 0.070 3.930 23 N -0.315 5.315 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.173 0.827 30 H 0.127 0.873 31 H 0.278 0.722 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -4.205 -6.446 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.166 5.166 4 C -0.090 4.090 5 C -0.167 4.167 6 C -0.025 4.025 7 C -0.138 4.138 8 C 0.085 3.915 9 C -0.494 4.494 10 H 0.093 0.907 11 C -0.139 4.139 12 N -0.428 5.428 13 Si 0.729 3.271 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.192 1.192 17 C -0.212 4.212 18 C -0.189 4.189 19 C -0.034 4.034 20 O -0.238 6.238 21 C -0.059 4.059 22 C -0.117 4.117 23 N -0.136 5.136 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.190 0.810 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.661 -5.300 -7.304 9.739 hybrid contribution 0.707 0.700 1.521 1.817 sum -2.955 -4.601 -5.783 7.959 Atomic orbital electron populations 1.22044 0.94350 1.02214 1.03525 1.21515 0.95609 0.78344 1.03146 1.48360 1.36713 1.09722 1.21847 1.22598 0.95528 0.94812 0.96015 1.18887 1.05015 0.93451 0.99350 1.17220 0.96046 0.96902 0.92282 1.21289 1.00592 1.01806 0.90160 1.17488 0.89624 0.91145 0.93287 1.19383 1.37867 1.00479 0.91701 0.90667 1.25811 0.93418 0.94306 1.00407 1.69825 1.34579 1.00204 1.38185 0.86429 0.80096 0.78670 0.81860 1.18956 1.20488 1.19156 1.20594 1.01933 1.05704 0.93016 1.20339 1.01543 1.01209 0.95782 1.18566 1.01809 1.01805 0.81221 1.85891 1.56695 1.62117 1.19093 1.22699 0.91881 0.94875 0.96422 1.23843 0.95093 0.96706 0.96013 1.77019 1.25095 0.97191 1.14273 0.91260 0.92100 0.91290 0.90516 0.89030 0.80992 0.85520 0.91092 0.88803 0.88614 0.94027 0.94115 0.90200 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.09 37.16 0.38 -1.41 16 2 C 0.14 1.65 7.22 -4.04 -0.03 1.62 16 3 N -0.38 -6.55 3.67 -61.09 -0.22 -6.78 16 4 C 0.05 1.05 11.31 -16.87 -0.19 0.86 16 5 C -0.16 -3.32 5.30 -105.34 -0.56 -3.88 16 6 C -0.02 -0.53 5.76 -104.79 -0.60 -1.14 16 7 C -0.12 -3.02 8.33 -38.57 -0.32 -3.35 16 8 C 0.09 2.27 5.57 -106.85 -0.60 1.68 16 9 C -0.46 -12.12 9.03 -37.84 -0.34 -12.46 16 10 H 0.08 1.89 7.91 -52.49 -0.41 1.48 16 11 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 12 N -0.80 -20.11 10.97 55.54 0.61 -19.50 16 13 Si 0.90 18.56 29.59 -169.99 -5.03 13.53 16 14 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 15 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 17 C -0.19 -4.66 9.72 -39.22 -0.38 -5.04 16 18 C -0.17 -3.79 8.95 -39.90 -0.36 -4.15 16 19 C 0.01 0.22 6.70 -38.46 -0.26 -0.04 16 20 O -0.32 -6.60 9.38 -18.63 -0.17 -6.78 16 21 C 0.04 0.58 9.80 101.05 0.99 1.57 16 22 C 0.07 1.37 11.30 -17.06 -0.19 1.18 16 23 N -0.31 -5.95 12.38 30.80 0.38 -5.57 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.17 3.07 8.06 -52.49 -0.42 2.65 16 30 H 0.13 3.33 6.17 -52.49 -0.32 3.01 16 31 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 32 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.10 1.86 6.26 -52.49 -0.33 1.53 16 34 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.18 3.18 8.06 -52.49 -0.42 2.76 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -29.32 318.41 -6.99 -36.31 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.80 Total: 6.74 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.55 Total: -22.75 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.77 Total: -31.85 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.17 Total: -6.78 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.32 -6.99 -36.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240648782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.578 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds