Wall clock time and date at job start Mon Mar 30 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47048 * 2 1 4 4 C 1.34868 * 125.89291 * 124.99996 * 3 2 1 5 5 C 1.36443 * 107.59852 * 180.02562 * 4 3 2 6 6 C 1.48465 * 126.22075 * 179.97438 * 5 4 3 7 7 C 1.38507 * 120.08649 * 309.72406 * 6 5 4 8 8 C 1.40645 * 119.57716 * 179.82250 * 7 6 5 9 9 C 1.41228 * 120.12163 * 180.17858 * 8 7 6 10 10 H 1.07999 * 120.00132 * 204.73862 * 9 8 7 11 11 C 1.39855 * 120.00192 * 24.73903 * 9 8 7 12 12 N 1.30906 * 120.00103 * 17.82970 * 11 9 8 13 13 Si 1.86799 * 120.00064 * 197.83114 * 11 9 8 14 14 H 1.48498 * 109.47008 * 59.99788 * 13 11 9 15 15 H 1.48505 * 109.46989 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47137 * 299.99796 * 13 11 9 17 17 C 1.40899 * 119.75415 * 0.40332 * 8 7 6 18 18 C 1.36442 * 120.17143 * 359.82085 * 17 8 7 19 19 C 1.39119 * 120.43147 * 0.02562 * 18 17 8 20 20 O 1.35644 * 119.87714 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00177 * 359.97438 * 20 19 18 22 22 C 1.40849 * 107.55858 * 0.22699 * 5 4 3 23 23 N 1.30675 * 108.10191 * 359.61442 * 22 5 4 24 24 H 1.09003 * 109.47161 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47216 * 299.99583 * 1 2 3 26 26 H 1.08994 * 109.47294 * 59.99764 * 1 2 3 27 27 H 1.09002 * 109.47049 * 240.00086 * 2 1 3 28 28 H 1.08994 * 109.47294 * 120.00236 * 2 1 3 29 29 H 1.07994 * 126.20044 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.21107 * 359.97438 * 7 6 5 31 31 H 0.96994 * 120.00069 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.91708 * 179.79311 * 17 8 7 33 33 H 1.07997 * 119.78470 * 179.97438 * 18 17 8 34 34 H 1.08994 * 109.47467 * 299.99914 * 21 20 19 35 35 H 1.09004 * 109.47049 * 60.00249 * 21 20 19 36 36 H 1.09006 * 109.46925 * 179.97438 * 21 20 19 37 37 H 1.07996 * 125.94762 * 179.77711 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8727 1.9178 0.8950 5 6 3.0725 3.2213 0.5445 6 6 3.9409 4.1965 1.2509 7 6 3.8241 4.3654 2.6206 8 6 4.6548 5.2895 3.2795 9 6 4.5480 5.4682 4.6764 10 1 4.8572 6.3998 5.1268 11 6 4.0418 4.4388 5.4764 12 7 3.9944 3.2145 5.0154 13 14 3.4334 4.8108 7.2029 14 1 2.3211 5.7923 7.1349 15 1 2.9498 3.5585 7.8379 16 1 4.5450 5.3774 8.0082 17 6 5.5906 6.0397 2.5401 18 6 5.6939 5.8685 1.1904 19 6 4.8781 4.9542 0.5316 20 8 4.9900 4.7934 -0.8106 21 6 5.9644 5.5952 -1.4811 22 6 2.3004 3.4750 -0.6059 23 7 1.6782 2.3722 -0.9287 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3174 1.4084 1.7370 30 1 3.1014 3.7894 3.1796 31 1 3.6431 2.5006 5.5701 32 1 6.2274 6.7524 3.0429 33 1 6.4130 6.4471 0.6297 34 1 5.7330 6.6497 -1.3308 35 1 6.9533 5.3790 -1.0769 36 1 5.9504 5.3682 -2.5472 37 1 2.2362 4.4163 -1.1314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240648782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:41 Heat of formation + Delta-G solvation = 38.536868 kcal Electronic energy + Delta-G solvation = -20342.723228 eV Core-core repulsion = 17279.117590 eV Total energy + Delta-G solvation = -3063.605639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99774 -40.24400 -37.98294 -35.49005 -35.01102 -32.77454 -31.09167 -30.83988 -28.94590 -28.17608 -26.35445 -24.74048 -23.26847 -22.47169 -21.24059 -20.93130 -19.08342 -18.45679 -17.62355 -17.00152 -16.42504 -16.20836 -16.09277 -15.68362 -15.17843 -14.80956 -14.71360 -14.22692 -14.05397 -13.84433 -13.61994 -13.20258 -13.11580 -12.93179 -12.79641 -12.70584 -12.42136 -12.28006 -12.24234 -11.76951 -11.64732 -11.47369 -11.10216 -10.80513 -10.25492 -9.82120 -9.00080 -8.67718 -8.40026 -6.14739 0.77247 1.08760 1.12835 1.41800 1.51060 1.55914 1.70708 2.05853 2.26434 2.80223 2.93303 3.62302 3.77188 4.09208 4.12414 4.19079 4.35907 4.37720 4.44377 4.54809 4.56984 4.69647 4.80085 4.82816 4.85996 4.97370 5.09119 5.19428 5.23669 5.34036 5.38377 5.61446 5.72391 5.79784 5.98335 6.15781 6.22055 6.36969 6.66605 6.81867 6.90354 7.03108 7.19444 8.43513 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.006993 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.589824 B = 4003.045445 C = 5930.549370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 N -0.372 5.372 4 C 0.059 3.941 5 C -0.190 4.190 6 C -0.029 4.029 7 C -0.137 4.137 8 C 0.056 3.944 9 C -0.501 4.501 10 H 0.072 0.928 11 C 0.038 3.962 12 N -0.827 5.827 13 Si 0.974 3.026 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.262 1.262 17 C -0.208 4.208 18 C -0.169 4.169 19 C 0.013 3.987 20 O -0.334 6.334 21 C 0.027 3.973 22 C 0.063 3.937 23 N -0.319 5.319 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.181 0.819 30 H 0.110 0.890 31 H 0.285 0.715 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.112 0.888 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -5.123 -7.136 9.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.002 3.998 3 N -0.155 5.155 4 C -0.088 4.088 5 C -0.201 4.201 6 C -0.031 4.031 7 C -0.157 4.157 8 C 0.054 3.946 9 C -0.532 4.532 10 H 0.090 0.910 11 C -0.176 4.176 12 N -0.453 5.453 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.186 1.186 17 C -0.228 4.228 18 C -0.188 4.188 19 C -0.032 4.032 20 O -0.249 6.249 21 C -0.068 4.068 22 C -0.122 4.122 23 N -0.141 5.141 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.198 0.802 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.869 -6.233 -8.031 10.877 hybrid contribution 0.799 0.909 1.550 1.966 sum -3.070 -5.324 -6.481 8.931 Atomic orbital electron populations 1.22004 0.93253 1.04076 1.02084 1.22046 0.96551 0.75932 1.05321 1.48785 1.35360 1.10945 1.20427 1.22707 0.95395 0.94468 0.96202 1.18936 1.06410 0.94142 1.00599 1.17448 0.96428 0.97285 0.91935 1.21156 1.00943 1.02476 0.91078 1.17832 0.90628 0.92217 0.93950 1.19612 1.40116 1.01087 0.92341 0.90994 1.26574 0.92976 0.93827 1.04199 1.69875 1.34791 1.00922 1.39757 0.85378 0.79394 0.78703 0.76973 1.18996 1.19285 1.18592 1.20787 1.02009 1.05959 0.94009 1.20624 1.01787 1.01096 0.95275 1.18703 1.00955 1.01019 0.82483 1.85879 1.58164 1.63165 1.17682 1.23053 0.91011 0.94996 0.97737 1.23927 0.95111 0.97431 0.95752 1.76971 1.25000 0.97363 1.14800 0.87755 0.93494 0.92688 0.88617 0.86611 0.80226 0.87216 0.90406 0.88046 0.85520 0.92926 0.93514 0.86988 0.79834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.09 71.98 0.73 -2.34 16 2 C 0.12 2.64 7.22 86.38 0.62 3.27 16 3 N -0.37 -12.26 3.67 -347.19 -1.27 -13.54 16 4 C 0.06 2.23 11.31 83.81 0.95 3.18 16 5 C -0.19 -8.14 5.30 -20.33 -0.11 -8.24 16 6 C -0.03 -1.40 5.76 -19.97 -0.12 -1.51 16 7 C -0.14 -7.23 8.33 22.92 0.19 -7.03 16 8 C 0.06 3.02 5.57 -21.31 -0.12 2.90 16 9 C -0.50 -27.11 9.03 23.40 0.21 -26.90 16 10 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 11 C 0.04 1.92 5.13 85.22 0.44 2.36 16 12 N -0.83 -42.44 10.97 21.81 0.24 -42.20 16 13 Si 0.97 38.43 29.59 68.60 2.03 40.46 16 14 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 15 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 C -0.21 -10.23 9.72 22.50 0.22 -10.01 16 18 C -0.17 -7.47 8.95 22.06 0.20 -7.28 16 19 C 0.01 0.58 6.70 23.00 0.15 0.73 16 20 O -0.33 -13.20 9.38 -89.59 -0.84 -14.04 16 21 C 0.03 0.77 9.80 113.37 1.11 1.89 16 22 C 0.06 2.48 11.30 85.50 0.97 3.45 16 23 N -0.32 -11.78 12.38 -56.46 -0.70 -12.48 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.12 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.18 6.42 8.06 -2.91 -0.02 6.39 16 30 H 0.11 6.05 6.17 -2.91 -0.02 6.04 16 31 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 32 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.13 4.68 6.26 -2.91 -0.02 4.66 16 34 H 0.05 1.40 7.65 -2.39 -0.02 1.38 16 35 H 0.05 1.29 7.65 -2.39 -0.02 1.27 16 36 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.18 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -64.58 318.41 5.97 -58.61 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 1.07 Total: 28.74 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 5.44 Total: -45.56 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.73 Total: -68.22 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.84 Total: -14.04 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -64.58 5.97 -58.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240648782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.149 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds