Wall clock time and date at job start Mon Mar 30 2020 01:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.34882 * 125.89939 * 124.71494 * 3 2 1 5 5 C 1.36417 * 107.60640 * 179.86991 * 4 3 2 6 6 C 1.48493 * 126.21931 * 180.14474 * 5 4 3 7 7 C 1.39309 * 120.06198 * 359.97438 * 6 5 4 8 8 C 1.37964 * 119.93969 * 179.79236 * 7 6 5 9 9 C 1.38791 * 120.05791 * 0.47942 * 8 7 6 10 10 O 1.35913 * 119.93688 * 179.72908 * 9 8 7 11 11 C 1.42904 * 117.00014 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47062 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00116 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99726 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47420 * 90.00077 * 16 14 12 18 18 H 1.48495 * 109.46935 * 209.99973 * 16 14 12 19 19 H 1.48505 * 109.47043 * 329.99654 * 16 14 12 20 20 C 1.38798 * 120.12505 * 359.74578 * 9 8 7 21 21 C 1.37952 * 120.06084 * 0.02598 * 20 9 8 22 22 C 1.40835 * 107.56256 * 0.39018 * 5 4 3 23 23 N 1.30684 * 108.10905 * 359.75622 * 22 5 4 24 24 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 28 28 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 29 29 H 1.08000 * 126.19718 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.03303 * 0.02562 * 7 6 5 31 31 H 1.07993 * 119.97010 * 180.20543 * 8 7 6 32 32 H 1.08997 * 109.46814 * 300.00365 * 11 10 9 33 33 H 1.09000 * 109.46971 * 60.00138 * 11 10 9 34 34 H 0.96992 * 119.99794 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.96956 * 179.97438 * 20 9 8 36 36 H 1.08001 * 120.02932 * 179.97438 * 21 20 9 37 37 H 1.08000 * 125.94561 * 179.78399 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8686 1.9196 0.8981 5 6 3.0727 3.2212 0.5445 6 6 3.9417 4.1964 1.2507 7 6 4.6429 3.8088 2.3904 8 6 5.4529 4.7157 3.0421 9 6 5.5618 6.0160 2.5691 10 8 6.3562 6.9089 3.2162 11 6 7.0492 6.4402 4.3748 12 6 7.8733 7.5607 4.9548 13 1 7.8680 8.5336 4.4858 14 6 8.6332 7.3441 6.0847 15 7 8.6384 6.1599 6.6566 16 14 9.6541 8.7333 6.8040 17 1 8.8417 9.4824 7.7960 18 1 10.8551 8.1704 7.4717 19 1 10.0772 9.6513 5.7161 20 6 4.8607 6.4062 1.4365 21 6 4.0529 5.5022 0.7782 22 6 2.3049 3.4736 -0.6089 23 7 1.6784 2.3723 -0.9288 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.3095 1.4116 1.7431 30 1 4.5555 2.7982 2.7612 31 1 5.9993 4.4148 3.9237 32 1 6.3272 6.0989 5.1166 33 1 7.7033 5.6136 4.0973 34 1 9.1726 6.0077 7.4517 35 1 4.9469 7.4187 1.0709 36 1 3.5073 5.8065 -0.1027 37 1 2.2448 4.4136 -1.1373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240652653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:47 Heat of formation + Delta-G solvation = 51.719950 kcal Electronic energy + Delta-G solvation = -19169.968803 eV Core-core repulsion = 16106.934826 eV Total energy + Delta-G solvation = -3063.033977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24915 -39.19370 -36.70734 -34.62081 -32.93719 -31.31036 -30.61995 -30.18177 -28.11479 -26.89574 -24.16093 -23.48806 -22.38090 -21.61791 -20.26597 -19.85487 -17.73035 -16.95009 -16.45195 -15.67420 -15.24001 -15.01093 -14.59282 -14.53953 -14.32066 -14.19099 -13.59320 -13.19207 -12.94332 -12.81306 -12.52438 -12.42954 -12.10269 -11.88179 -11.65559 -11.49694 -11.05193 -10.97292 -10.58684 -10.46870 -10.28437 -10.12827 -9.52338 -9.26335 -8.89250 -8.58899 -8.47892 -7.02392 -6.24722 -4.28121 1.46708 1.82514 2.01743 2.35883 3.06532 3.24403 3.29556 3.34558 4.17831 4.21994 4.39584 4.56913 4.60811 4.70278 4.81050 4.87831 5.12603 5.18005 5.24987 5.35361 5.37045 5.41856 5.58674 5.67520 5.77325 5.82255 6.08375 6.22269 6.46728 6.48408 6.77272 6.79696 6.93781 7.01020 7.04312 7.16067 7.32197 7.62750 7.69002 7.96631 8.50049 8.85423 9.37130 10.86609 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045844 B = 0.002908 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.614293 B = 9627.592106 C =10159.972043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.053 3.947 5 C -0.174 4.174 6 C -0.064 4.064 7 C -0.077 4.077 8 C -0.207 4.207 9 C 0.149 3.851 10 O -0.318 6.318 11 C 0.193 3.807 12 C -0.524 4.524 13 H 0.070 0.930 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.913 3.087 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.164 4.164 21 C -0.078 4.078 22 C 0.056 3.944 23 N -0.298 5.298 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 -11.706 -11.706 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.093 4.093 5 C -0.185 4.185 6 C -0.066 4.066 7 C -0.096 4.096 8 C -0.225 4.225 9 C 0.101 3.899 10 O -0.230 6.230 11 C 0.120 3.880 12 C -0.562 4.562 13 H 0.089 0.911 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.740 3.260 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.182 4.182 21 C -0.096 4.096 22 C -0.130 4.130 23 N -0.119 5.119 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.191 0.809 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.126 -12.333 -12.402 22.482 hybrid contribution 1.211 0.691 1.316 1.917 sum -12.914 -11.642 -11.087 20.621 Atomic orbital electron populations 1.22061 0.93864 1.02750 1.03645 1.21663 0.96025 0.77591 1.03705 1.48519 1.35948 1.10054 1.21141 1.22517 0.95853 0.94634 0.96249 1.18898 1.06074 0.93562 0.99961 1.17768 0.99674 0.92657 0.96492 1.20784 0.95799 0.98609 0.94390 1.21367 1.04089 0.93664 1.03427 1.19324 0.90077 0.88874 0.91629 1.86120 1.56178 1.37807 1.42916 1.20637 0.90734 0.96743 0.79888 1.20990 1.26659 0.97479 1.11031 0.91134 1.24938 0.96644 0.96472 0.96189 1.69945 1.40779 1.21657 1.20958 0.86247 0.79286 0.81305 0.79178 1.20288 1.20927 1.19477 1.20334 1.00864 1.00638 0.96402 1.20719 0.97864 0.92056 0.98964 1.23934 0.95598 0.97310 0.96205 1.77145 1.23831 0.97043 1.13860 0.92037 0.91102 0.90794 0.88681 0.89887 0.80898 0.86757 0.84895 0.96092 0.96076 0.92352 0.85607 0.86138 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.09 37.16 0.38 -0.69 16 2 C 0.13 0.91 7.22 -4.04 -0.03 0.88 16 3 N -0.37 -4.09 3.67 -61.09 -0.22 -4.31 16 4 C 0.05 0.60 10.83 -16.87 -0.18 0.42 16 5 C -0.17 -2.29 6.04 -105.34 -0.64 -2.93 16 6 C -0.06 -0.96 5.88 -104.87 -0.62 -1.58 16 7 C -0.08 -1.22 9.56 -39.28 -0.38 -1.59 16 8 C -0.21 -3.92 9.02 -39.48 -0.36 -4.28 16 9 C 0.15 3.07 6.69 -39.17 -0.26 2.81 16 10 O -0.32 -7.75 10.12 -19.47 -0.20 -7.95 16 11 C 0.19 5.14 4.49 36.01 0.16 5.30 16 12 C -0.52 -15.00 9.43 -34.44 -0.32 -15.32 16 13 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 16 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.16 -2.83 9.97 -39.48 -0.39 -3.23 16 21 C -0.08 -1.15 9.57 -39.29 -0.38 -1.52 16 22 C 0.06 0.69 11.42 -17.06 -0.19 0.50 16 23 N -0.30 -3.83 12.38 30.80 0.38 -3.44 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.17 1.49 7.28 -52.49 -0.38 1.11 16 30 H 0.11 1.48 7.01 -52.48 -0.37 1.11 16 31 H 0.13 2.65 6.28 -52.49 -0.33 2.32 16 32 H 0.02 0.58 7.65 -51.93 -0.40 0.18 16 33 H 0.02 0.58 7.66 -51.93 -0.40 0.19 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.12 1.40 7.04 -52.49 -0.37 1.03 16 37 H 0.18 1.78 7.34 -52.49 -0.39 1.39 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -32.20 321.06 -7.50 -39.70 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.71 Total: -0.27 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -3.31 Total: -19.66 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.89 Total: -32.91 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.20 Total: -7.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.20 -7.50 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240652653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.424 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds