Wall clock time and date at job start Mon Mar 30 2020 01:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.34882 * 125.89939 * 124.71494 * 3 2 1 5 5 C 1.36417 * 107.60640 * 179.86991 * 4 3 2 6 6 C 1.48493 * 126.21931 * 180.14474 * 5 4 3 7 7 C 1.39309 * 120.06198 * 359.97438 * 6 5 4 8 8 C 1.37964 * 119.93969 * 179.79236 * 7 6 5 9 9 C 1.38791 * 120.05791 * 0.47942 * 8 7 6 10 10 O 1.35913 * 119.93688 * 179.72908 * 9 8 7 11 11 C 1.42904 * 117.00014 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47062 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00116 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99726 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47420 * 90.00077 * 16 14 12 18 18 H 1.48495 * 109.46935 * 209.99973 * 16 14 12 19 19 H 1.48505 * 109.47043 * 329.99654 * 16 14 12 20 20 C 1.38798 * 120.12505 * 359.74578 * 9 8 7 21 21 C 1.37952 * 120.06084 * 0.02598 * 20 9 8 22 22 C 1.40835 * 107.56256 * 0.39018 * 5 4 3 23 23 N 1.30684 * 108.10905 * 359.75622 * 22 5 4 24 24 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 28 28 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 29 29 H 1.08000 * 126.19718 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.03303 * 0.02562 * 7 6 5 31 31 H 1.07993 * 119.97010 * 180.20543 * 8 7 6 32 32 H 1.08997 * 109.46814 * 300.00365 * 11 10 9 33 33 H 1.09000 * 109.46971 * 60.00138 * 11 10 9 34 34 H 0.96992 * 119.99794 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.96956 * 179.97438 * 20 9 8 36 36 H 1.08001 * 120.02932 * 179.97438 * 21 20 9 37 37 H 1.08000 * 125.94561 * 179.78399 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8686 1.9196 0.8981 5 6 3.0727 3.2212 0.5445 6 6 3.9417 4.1964 1.2507 7 6 4.6429 3.8088 2.3904 8 6 5.4529 4.7157 3.0421 9 6 5.5618 6.0160 2.5691 10 8 6.3562 6.9089 3.2162 11 6 7.0492 6.4402 4.3748 12 6 7.8733 7.5607 4.9548 13 1 7.8680 8.5336 4.4858 14 6 8.6332 7.3441 6.0847 15 7 8.6384 6.1599 6.6566 16 14 9.6541 8.7333 6.8040 17 1 8.8417 9.4824 7.7960 18 1 10.8551 8.1704 7.4717 19 1 10.0772 9.6513 5.7161 20 6 4.8607 6.4062 1.4365 21 6 4.0529 5.5022 0.7782 22 6 2.3049 3.4736 -0.6089 23 7 1.6784 2.3723 -0.9288 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.3095 1.4116 1.7431 30 1 4.5555 2.7982 2.7612 31 1 5.9993 4.4148 3.9237 32 1 6.3272 6.0989 5.1166 33 1 7.7033 5.6136 4.0973 34 1 9.1726 6.0077 7.4517 35 1 4.9469 7.4187 1.0709 36 1 3.5073 5.8065 -0.1027 37 1 2.2448 4.4136 -1.1373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240652653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:47 Heat of formation + Delta-G solvation = 32.884609 kcal Electronic energy + Delta-G solvation = -19170.785564 eV Core-core repulsion = 16106.934826 eV Total energy + Delta-G solvation = -3063.850739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15668 -40.69978 -38.23699 -35.37749 -35.01830 -32.52764 -31.86956 -31.08309 -29.88359 -28.26924 -25.39607 -24.89274 -23.51658 -23.03417 -21.24010 -20.92556 -19.21571 -18.46118 -18.07098 -16.82352 -16.46807 -16.42187 -16.30516 -16.03610 -15.43555 -15.08839 -14.63955 -14.59684 -14.19028 -13.87051 -13.79329 -13.48379 -13.26028 -13.08239 -12.95840 -12.84675 -12.75762 -12.28666 -12.20558 -11.99776 -11.75983 -11.51032 -11.28332 -10.73442 -10.39327 -10.02340 -9.86570 -8.38927 -8.32934 -6.53011 0.28144 0.49568 1.04926 1.39658 1.42547 1.54601 1.62566 1.96931 2.28751 2.81105 2.95506 3.09317 3.53005 3.84695 4.04173 4.07079 4.10271 4.12580 4.29031 4.39303 4.45866 4.48551 4.60752 4.69940 4.82567 4.87584 4.95534 4.97905 4.99179 5.19221 5.23552 5.38116 5.46737 5.59966 5.68958 5.75566 5.86206 5.99378 6.11868 6.52709 6.73270 6.84852 7.19346 8.73444 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045844 B = 0.002908 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.614293 B = 9627.592106 C =10159.972043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.372 5.372 4 C 0.067 3.933 5 C -0.207 4.207 6 C -0.043 4.043 7 C -0.079 4.079 8 C -0.219 4.219 9 C 0.097 3.903 10 O -0.340 6.340 11 C 0.213 3.787 12 C -0.558 4.558 13 H 0.066 0.934 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.988 3.012 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.264 1.264 20 C -0.162 4.162 21 C -0.074 4.074 22 C 0.055 3.945 23 N -0.323 5.323 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.202 0.798 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.000 1.000 33 H 0.001 0.999 34 H 0.274 0.726 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -12.734 -12.545 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.000 4.000 3 N -0.153 5.153 4 C -0.080 4.080 5 C -0.218 4.218 6 C -0.045 4.045 7 C -0.098 4.098 8 C -0.238 4.238 9 C 0.051 3.949 10 O -0.254 6.254 11 C 0.139 3.861 12 C -0.595 4.595 13 H 0.084 0.916 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.810 3.190 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.188 1.188 20 C -0.180 4.180 21 C -0.092 4.092 22 C -0.131 4.131 23 N -0.144 5.144 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.218 0.782 30 H 0.162 0.838 31 H 0.128 0.872 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.103 -13.394 -13.277 24.161 hybrid contribution 1.309 0.776 1.428 2.087 sum -13.794 -12.618 -11.849 22.133 Atomic orbital electron populations 1.22019 0.93565 1.04011 1.02184 1.22086 0.96314 0.75856 1.05707 1.48915 1.35160 1.10994 1.20249 1.22992 0.94568 0.94204 0.96281 1.18859 1.07571 0.94190 1.01167 1.18019 0.98090 0.93062 0.95327 1.21038 0.94932 0.99323 0.94471 1.21308 1.05166 0.93999 1.03359 1.19751 0.92108 0.89426 0.93592 1.86030 1.57648 1.39160 1.42591 1.20142 0.89857 0.95633 0.80424 1.21341 1.28127 0.97831 1.12243 0.91582 1.25970 0.97428 0.99369 0.96095 1.70051 1.41302 1.23684 1.21362 0.85111 0.77645 0.77791 0.78450 1.19130 1.19683 1.18802 1.20565 1.00410 1.01771 0.95264 1.21119 0.96939 0.91547 0.99557 1.24292 0.94849 0.98072 0.95893 1.77132 1.24625 0.97679 1.14969 0.93024 0.92937 0.88213 0.85755 0.88852 0.78161 0.83794 0.87160 0.98180 0.98164 0.91718 0.84592 0.82390 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.09 71.98 0.73 -0.93 16 2 C 0.12 1.27 7.22 86.38 0.62 1.89 16 3 N -0.37 -7.02 3.67 -347.18 -1.27 -8.30 16 4 C 0.07 1.30 10.83 83.80 0.91 2.21 16 5 C -0.21 -4.89 6.04 -20.33 -0.12 -5.01 16 6 C -0.04 -1.21 5.88 -20.03 -0.12 -1.33 16 7 C -0.08 -2.44 9.56 22.46 0.21 -2.23 16 8 C -0.22 -8.72 9.02 22.34 0.20 -8.52 16 9 C 0.10 4.20 6.69 22.54 0.15 4.35 16 10 O -0.34 -17.70 10.12 -92.58 -0.94 -18.63 16 11 C 0.21 12.14 4.49 71.24 0.32 12.46 16 12 C -0.56 -33.30 9.43 25.60 0.24 -33.06 16 13 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 14 C 0.01 0.62 5.46 84.66 0.46 1.08 16 15 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 16 Si 0.99 43.86 29.54 68.60 2.03 45.89 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 20 C -0.16 -5.60 9.97 22.34 0.22 -5.38 16 21 C -0.07 -2.04 9.57 22.46 0.22 -1.83 16 22 C 0.05 1.22 11.42 85.50 0.98 2.19 16 23 N -0.32 -7.54 12.38 -56.46 -0.70 -8.24 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.12 0.61 8.07 -2.39 -0.02 0.59 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.20 2.62 7.28 -2.91 -0.02 2.60 16 30 H 0.14 3.44 7.01 -2.91 -0.02 3.42 16 31 H 0.11 4.79 6.28 -2.91 -0.02 4.77 16 32 H 0.00 0.02 7.65 -2.39 -0.02 0.01 16 33 H 0.00 0.03 7.66 -2.39 -0.02 0.02 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.16 3.16 7.04 -2.91 -0.02 3.14 16 37 H 0.20 3.33 7.34 -2.91 -0.02 3.31 16 Total: -1.00 -72.64 321.06 5.49 -67.15 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.07 Total: 10.81 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 5.02 Total: -34.11 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.69 Total: -71.11 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.94 Total: -18.63 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.64 5.49 -67.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240652653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.030 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds