Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47697 * 2 1 4 4 N 1.40077 * 126.13938 * 276.81515 * 3 2 1 5 5 C 1.30895 * 108.51650 * 180.02562 * 4 3 2 6 6 C 1.39489 * 108.59626 * 359.76715 * 5 4 3 7 7 C 1.36301 * 126.13912 * 96.84572 * 3 2 1 8 8 C 1.47947 * 126.34359 * 359.93494 * 7 3 2 9 9 C 1.40107 * 119.93655 * 336.30827 * 8 7 3 10 10 C 1.37971 * 120.45402 * 180.02562 * 9 8 7 11 11 C 1.38545 * 120.32882 * 0.02562 * 10 9 8 12 12 O 1.35600 * 120.07153 * 179.70319 * 11 10 9 13 13 C 1.42898 * 116.99589 * 359.97438 * 12 11 10 14 14 C 1.41404 * 119.86350 * 359.97438 * 11 10 9 15 15 C 1.41189 * 120.22259 * 180.02562 * 14 11 10 16 16 H 1.07993 * 120.00288 * 329.45249 * 15 14 11 17 17 C 1.39899 * 119.99842 * 149.45576 * 15 14 11 18 18 N 1.30885 * 119.99841 * 344.89510 * 17 15 14 19 19 Si 1.86798 * 119.99737 * 164.88947 * 17 15 14 20 20 H 1.48499 * 109.46948 * 90.00286 * 19 17 15 21 21 H 1.48501 * 109.47111 * 209.99804 * 19 17 15 22 22 H 1.48495 * 109.47442 * 330.00225 * 19 17 15 23 23 C 1.38786 * 119.93697 * 156.28841 * 8 7 3 24 24 H 1.08992 * 109.47224 * 183.38304 * 1 2 3 25 25 H 1.09006 * 109.47062 * 303.38802 * 1 2 3 26 26 H 1.09000 * 109.46834 * 63.37987 * 1 2 3 27 27 H 1.09004 * 109.47404 * 239.99872 * 2 1 3 28 28 H 1.08999 * 109.47341 * 119.99782 * 2 1 3 29 29 H 1.07995 * 125.70136 * 180.02562 * 5 4 3 30 30 H 1.08009 * 126.07722 * 180.24171 * 6 5 4 31 31 H 1.07998 * 119.77067 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.83774 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.46556 * 179.97438 * 13 12 11 34 34 H 1.08989 * 109.47391 * 300.00444 * 13 12 11 35 35 H 1.09005 * 109.46672 * 60.00627 * 13 12 11 36 36 H 0.97002 * 119.99505 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.16351 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1673 2.2047 -1.1232 5 6 2.6281 3.3650 -0.7298 6 6 2.7874 3.3338 0.6556 7 6 2.4101 2.0952 1.0929 8 6 2.4189 1.6198 2.4939 9 6 1.5747 0.5710 2.8816 10 6 1.5738 0.1195 4.1854 11 6 2.4084 0.6993 5.1271 12 8 2.3990 0.2555 6.4083 13 6 1.5026 -0.8135 6.7179 14 6 3.2661 1.7587 4.7506 15 6 4.1201 2.3547 5.7040 16 1 3.8251 2.3962 6.7420 17 6 5.3485 2.8915 5.3039 18 7 5.8430 2.5904 4.1301 19 14 6.2827 4.0381 6.4449 20 1 7.1930 3.2436 7.3082 21 1 7.0781 4.9986 5.6388 22 1 5.3197 4.7834 7.2948 23 6 3.2637 2.2132 3.4214 24 1 -0.3633 -1.0258 0.0606 25 1 -0.3633 0.5656 0.8581 26 1 -0.3633 0.4605 -0.9187 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8445 4.2072 -1.3703 30 1 3.1473 4.1438 1.2728 31 1 0.9196 0.1134 2.1551 32 1 0.9187 -0.6893 4.4735 33 1 1.5954 -1.0713 7.7729 34 1 0.4794 -0.5019 6.5083 35 1 1.7498 -1.6829 6.1086 36 1 6.6949 2.9624 3.8528 37 1 3.9152 3.0212 3.1230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240699683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = 56.794946 kcal Electronic energy + Delta-G solvation = -20618.764105 eV Core-core repulsion = 17555.950197 eV Total energy + Delta-G solvation = -3062.813909 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55037 -38.69389 -36.22444 -34.37536 -33.55216 -30.90715 -29.90449 -29.00933 -27.55382 -26.49226 -25.22659 -23.52018 -21.55199 -21.31721 -19.94175 -19.04308 -17.53246 -16.83712 -16.03514 -15.34476 -14.99746 -14.74429 -14.57592 -14.30312 -13.88939 -13.43280 -13.05496 -12.86848 -12.59404 -12.31156 -12.21605 -11.86380 -11.79425 -11.39184 -11.27063 -11.13633 -11.01252 -10.86401 -10.51536 -10.31152 -10.18842 -9.94894 -9.51454 -9.23930 -8.79906 -8.09266 -7.58902 -6.89744 -6.68762 -4.33149 1.95987 2.68383 2.92650 3.03260 3.09814 3.12324 3.16779 3.61973 3.95742 4.38963 4.58610 4.89308 5.20532 5.33100 5.36902 5.44452 5.53695 5.66920 5.72828 5.74253 5.85771 5.87805 5.96841 6.03162 6.19691 6.29453 6.36571 6.59429 6.68072 7.00561 7.16852 7.19608 7.25220 7.45276 7.50233 7.65820 7.81000 8.05045 8.25836 8.30485 8.59894 8.76706 8.93921 10.20423 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.006975 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.130820 B = 4013.252377 C = 5605.451600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.374 5.374 4 N -0.318 5.318 5 C 0.042 3.958 6 C -0.277 4.277 7 C 0.166 3.834 8 C -0.060 4.060 9 C -0.204 4.204 10 C -0.179 4.179 11 C 0.029 3.971 12 O -0.309 6.309 13 C 0.033 3.967 14 C 0.097 3.903 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.100 4.100 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.175 0.825 30 H 0.144 0.856 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.282 0.718 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -2.944 -2.772 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.157 5.157 4 N -0.139 5.139 5 C -0.143 4.143 6 C -0.306 4.306 7 C 0.041 3.959 8 C -0.062 4.062 9 C -0.224 4.224 10 C -0.198 4.198 11 C -0.016 4.016 12 O -0.223 6.223 13 C -0.063 4.063 14 C 0.094 3.906 15 C -0.477 4.477 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.423 5.423 19 Si 0.734 3.266 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.121 4.121 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.192 0.808 30 H 0.162 0.838 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.879 -3.669 -3.802 7.905 hybrid contribution 0.572 0.694 0.973 1.325 sum -5.307 -2.976 -2.829 6.710 Atomic orbital electron populations 1.22220 0.94887 1.02569 1.03129 1.21788 0.94893 0.78774 1.04372 1.48808 1.51485 1.11503 1.03908 1.77131 1.24904 1.03123 1.08787 1.23547 0.99572 0.95952 0.95192 1.21351 1.16031 0.98459 0.94755 1.20015 0.96153 0.91484 0.88290 1.17771 1.00827 0.99293 0.88312 1.20495 1.04448 1.01754 0.95730 1.20526 1.02328 1.02720 0.94256 1.19445 1.02118 0.97296 0.82759 1.85981 1.59679 1.50060 1.26564 1.22767 0.93101 0.89781 1.00624 1.16945 0.91526 0.89331 0.92785 1.19356 1.00481 1.31919 0.95965 0.89849 1.25869 0.97650 0.95228 0.95604 1.69809 1.17605 1.35348 1.19580 0.86287 0.79543 0.80222 0.80571 1.19564 1.20121 1.18453 1.21077 0.98633 1.00500 0.91862 0.90963 0.91480 0.91954 0.89852 0.87698 0.80787 0.83805 0.87782 0.88145 0.89882 0.94109 0.94047 0.90749 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.53 37.16 0.35 -1.85 16 2 C 0.12 1.89 6.30 -4.05 -0.03 1.86 16 3 N -0.37 -7.11 3.65 -57.41 -0.21 -7.32 16 4 N -0.32 -6.05 12.56 30.55 0.38 -5.66 16 5 C 0.04 0.74 11.99 -17.48 -0.21 0.53 16 6 C -0.28 -5.48 10.18 -39.68 -0.40 -5.88 16 7 C 0.17 3.50 6.70 -82.47 -0.55 2.95 16 8 C -0.06 -1.35 5.80 -105.02 -0.61 -1.96 16 9 C -0.20 -4.23 8.40 -38.98 -0.33 -4.56 16 10 C -0.18 -3.76 9.01 -39.57 -0.36 -4.12 16 11 C 0.03 0.68 6.72 -38.26 -0.26 0.43 16 12 O -0.31 -6.84 9.83 -18.50 -0.18 -7.02 16 13 C 0.03 0.53 9.81 101.05 0.99 1.52 16 14 C 0.10 2.51 5.52 -106.73 -0.59 1.92 16 15 C -0.45 -11.69 8.64 -37.84 -0.33 -12.02 16 16 H 0.08 2.16 7.73 -52.49 -0.41 1.76 16 17 C 0.07 1.82 5.15 -17.33 -0.09 1.73 16 18 N -0.80 -20.28 11.21 55.55 0.62 -19.65 16 19 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 23 C -0.10 -2.48 8.15 -38.53 -0.31 -2.80 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.96 7.01 -51.93 -0.36 0.60 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.11 1.64 5.70 -51.93 -0.30 1.34 16 29 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.14 2.73 7.78 -52.48 -0.41 2.32 16 31 H 0.10 1.86 3.61 -52.49 -0.19 1.67 16 32 H 0.10 1.80 6.27 -52.49 -0.33 1.47 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.60 7.66 -51.94 -0.40 0.20 16 35 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.13 3.30 5.95 -52.49 -0.31 2.99 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -29.14 308.35 -6.83 -35.97 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.35 Total: 7.75 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.72 Total: -22.25 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.80 Total: -32.64 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.18 Total: -7.02 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.14 -6.83 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240699683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.762 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds