Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47697 * 2 1 4 4 N 1.40077 * 126.13938 * 276.81515 * 3 2 1 5 5 C 1.30895 * 108.51650 * 180.02562 * 4 3 2 6 6 C 1.39489 * 108.59626 * 359.76715 * 5 4 3 7 7 C 1.36301 * 126.13912 * 96.84572 * 3 2 1 8 8 C 1.47947 * 126.34359 * 359.93494 * 7 3 2 9 9 C 1.40107 * 119.93655 * 336.30827 * 8 7 3 10 10 C 1.37971 * 120.45402 * 180.02562 * 9 8 7 11 11 C 1.38545 * 120.32882 * 0.02562 * 10 9 8 12 12 O 1.35600 * 120.07153 * 179.70319 * 11 10 9 13 13 C 1.42898 * 116.99589 * 359.97438 * 12 11 10 14 14 C 1.41404 * 119.86350 * 359.97438 * 11 10 9 15 15 C 1.41189 * 120.22259 * 180.02562 * 14 11 10 16 16 H 1.07993 * 120.00288 * 329.45249 * 15 14 11 17 17 C 1.39899 * 119.99842 * 149.45576 * 15 14 11 18 18 N 1.30885 * 119.99841 * 344.89510 * 17 15 14 19 19 Si 1.86798 * 119.99737 * 164.88947 * 17 15 14 20 20 H 1.48499 * 109.46948 * 90.00286 * 19 17 15 21 21 H 1.48501 * 109.47111 * 209.99804 * 19 17 15 22 22 H 1.48495 * 109.47442 * 330.00225 * 19 17 15 23 23 C 1.38786 * 119.93697 * 156.28841 * 8 7 3 24 24 H 1.08992 * 109.47224 * 183.38304 * 1 2 3 25 25 H 1.09006 * 109.47062 * 303.38802 * 1 2 3 26 26 H 1.09000 * 109.46834 * 63.37987 * 1 2 3 27 27 H 1.09004 * 109.47404 * 239.99872 * 2 1 3 28 28 H 1.08999 * 109.47341 * 119.99782 * 2 1 3 29 29 H 1.07995 * 125.70136 * 180.02562 * 5 4 3 30 30 H 1.08009 * 126.07722 * 180.24171 * 6 5 4 31 31 H 1.07998 * 119.77067 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.83774 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.46556 * 179.97438 * 13 12 11 34 34 H 1.08989 * 109.47391 * 300.00444 * 13 12 11 35 35 H 1.09005 * 109.46672 * 60.00627 * 13 12 11 36 36 H 0.97002 * 119.99505 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.16351 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1673 2.2047 -1.1232 5 6 2.6281 3.3650 -0.7298 6 6 2.7874 3.3338 0.6556 7 6 2.4101 2.0952 1.0929 8 6 2.4189 1.6198 2.4939 9 6 1.5747 0.5710 2.8816 10 6 1.5738 0.1195 4.1854 11 6 2.4084 0.6993 5.1271 12 8 2.3990 0.2555 6.4083 13 6 1.5026 -0.8135 6.7179 14 6 3.2661 1.7587 4.7506 15 6 4.1201 2.3547 5.7040 16 1 3.8251 2.3962 6.7420 17 6 5.3485 2.8915 5.3039 18 7 5.8430 2.5904 4.1301 19 14 6.2827 4.0381 6.4449 20 1 7.1930 3.2436 7.3082 21 1 7.0781 4.9986 5.6388 22 1 5.3197 4.7834 7.2948 23 6 3.2637 2.2132 3.4214 24 1 -0.3633 -1.0258 0.0606 25 1 -0.3633 0.5656 0.8581 26 1 -0.3633 0.4605 -0.9187 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8445 4.2072 -1.3703 30 1 3.1473 4.1438 1.2728 31 1 0.9196 0.1134 2.1551 32 1 0.9187 -0.6893 4.4735 33 1 1.5954 -1.0713 7.7729 34 1 0.4794 -0.5019 6.5083 35 1 1.7498 -1.6829 6.1086 36 1 6.6949 2.9624 3.8528 37 1 3.9152 3.0212 3.1230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240699683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = 40.344376 kcal Electronic energy + Delta-G solvation = -20619.477456 eV Core-core repulsion = 17555.950197 eV Total energy + Delta-G solvation = -3063.527259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03281 -40.36718 -37.90073 -35.85745 -35.15278 -32.52184 -31.66883 -30.32110 -29.12818 -27.97205 -27.00938 -24.75666 -23.21128 -22.99368 -21.41435 -20.60574 -19.24031 -18.46913 -17.63835 -17.03092 -16.53666 -16.24155 -15.99039 -15.80997 -15.28441 -14.92963 -14.57115 -14.49810 -14.19325 -13.82516 -13.55417 -13.38393 -13.10065 -12.90983 -12.81360 -12.66590 -12.49226 -12.26765 -12.12447 -11.95165 -11.75065 -11.55084 -11.19802 -11.04055 -10.29760 -9.59337 -9.40742 -8.67220 -8.43401 -6.24294 0.30759 0.92552 1.35794 1.40822 1.49757 1.55117 1.66050 2.04951 2.25592 2.77642 2.88868 3.62071 3.64274 3.80662 4.09760 4.17705 4.26641 4.35100 4.38178 4.51744 4.52895 4.56207 4.74728 4.77177 4.81717 4.93123 4.94098 5.05352 5.18590 5.25233 5.36802 5.44953 5.71875 5.75590 5.83143 5.98749 6.14106 6.28340 6.42741 6.77096 6.82907 6.91767 7.18289 8.40807 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.006975 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.130820 B = 4013.252377 C = 5605.451600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 N -0.373 5.373 4 N -0.325 5.325 5 C 0.048 3.952 6 C -0.290 4.290 7 C 0.140 3.860 8 C -0.068 4.068 9 C -0.189 4.189 10 C -0.179 4.179 11 C 0.020 3.980 12 O -0.337 6.337 13 C 0.023 3.977 14 C 0.059 3.941 15 C -0.485 4.485 16 H 0.071 0.929 17 C 0.036 3.964 18 N -0.832 5.832 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.118 4.118 24 H 0.107 0.893 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.214 0.786 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.286 0.714 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -4.017 -3.524 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.157 5.157 4 N -0.147 5.147 5 C -0.136 4.136 6 C -0.319 4.319 7 C 0.013 3.987 8 C -0.070 4.070 9 C -0.209 4.209 10 C -0.198 4.198 11 C -0.025 4.025 12 O -0.251 6.251 13 C -0.071 4.071 14 C 0.056 3.944 15 C -0.515 4.515 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.459 5.459 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.139 4.139 24 H 0.125 0.875 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.231 0.769 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.215 -4.775 -4.556 9.778 hybrid contribution 0.825 0.885 1.131 1.656 sum -6.389 -3.890 -3.426 8.227 Atomic orbital electron populations 1.22172 0.92798 1.04536 1.02387 1.22130 0.96583 0.77138 1.05064 1.49118 1.51015 1.12472 1.03106 1.77098 1.25050 1.03593 1.08926 1.24102 0.98270 0.96629 0.94583 1.21562 1.15982 0.98317 0.96048 1.19969 0.97923 0.92545 0.88270 1.17947 1.00536 0.99600 0.88957 1.20950 1.03294 1.00245 0.96379 1.20905 1.02009 1.03185 0.93694 1.19628 1.01878 0.96967 0.84032 1.85933 1.61481 1.51914 1.25809 1.23144 0.92860 0.88481 1.02662 1.17307 0.92871 0.90784 0.93410 1.19451 1.01898 1.34562 0.95596 0.91079 1.26607 0.97987 0.96111 0.97067 1.69871 1.18229 1.36637 1.21204 0.85283 0.78115 0.78225 0.78581 1.19038 1.19077 1.18416 1.20942 0.99576 1.00934 0.92429 0.87486 0.92920 0.92032 0.88026 0.88158 0.76924 0.84225 0.84490 0.84420 0.87114 0.92514 0.92780 0.90368 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.53 71.98 0.69 -2.97 16 2 C 0.11 3.12 6.30 86.38 0.54 3.67 16 3 N -0.37 -13.69 3.65 -335.56 -1.23 -14.92 16 4 N -0.33 -11.78 12.56 -57.25 -0.72 -12.49 16 5 C 0.05 1.63 11.99 85.13 1.02 2.65 16 6 C -0.29 -11.52 10.18 22.20 0.23 -11.29 16 7 C 0.14 5.86 6.70 40.66 0.27 6.14 16 8 C -0.07 -3.11 5.80 -20.12 -0.12 -3.23 16 9 C -0.19 -7.58 8.40 22.66 0.19 -7.39 16 10 C -0.18 -7.24 9.01 22.28 0.20 -7.04 16 11 C 0.02 0.97 6.72 23.12 0.16 1.13 16 12 O -0.34 -14.89 9.83 -89.10 -0.88 -15.77 16 13 C 0.02 0.69 9.81 113.37 1.11 1.80 16 14 C 0.06 3.17 5.52 -21.23 -0.12 3.05 16 15 C -0.48 -26.66 8.64 23.40 0.20 -26.46 16 16 H 0.07 3.90 7.73 -2.91 -0.02 3.88 16 17 C 0.04 1.84 5.15 85.24 0.44 2.28 16 18 N -0.83 -44.28 11.21 21.82 0.24 -44.04 16 19 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.12 -6.12 8.15 22.95 0.19 -5.94 16 24 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.35 7.01 -2.38 -0.02 1.34 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.10 2.90 5.70 -2.39 -0.01 2.88 16 29 H 0.21 5.21 8.06 -2.91 -0.02 5.18 16 30 H 0.14 5.52 7.78 -2.91 -0.02 5.49 16 31 H 0.14 4.51 3.61 -2.91 -0.01 4.50 16 32 H 0.14 4.45 6.27 -2.91 -0.02 4.43 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.05 1.46 7.65 -2.38 -0.02 1.44 16 36 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 37 H 0.11 5.93 5.95 -2.91 -0.02 5.92 16 Total: -1.00 -65.89 308.35 5.55 -60.34 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 1.09 Total: 29.07 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 5.00 Total: -43.61 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.70 Total: -71.45 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.88 Total: -15.77 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -65.89 5.55 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240699683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.685 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds