Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46525 * 2 1 4 4 N 1.40079 * 126.13944 * 274.25406 * 3 2 1 5 5 C 1.30891 * 108.51832 * 180.02562 * 4 3 2 6 6 C 1.39493 * 108.60316 * 359.97438 * 5 4 3 7 7 C 1.36308 * 126.14335 * 94.28280 * 3 2 1 8 8 C 1.47914 * 126.34045 * 359.71735 * 7 3 2 9 9 C 1.38764 * 120.11549 * 49.44575 * 8 7 3 10 10 C 1.40572 * 119.55586 * 179.77789 * 9 8 7 11 11 C 1.41245 * 120.11037 * 180.23536 * 10 9 8 12 12 H 1.08003 * 119.99801 * 205.63932 * 11 10 9 13 13 C 1.39844 * 120.00442 * 25.63196 * 11 10 9 14 14 N 1.30902 * 119.99626 * 16.68809 * 13 11 10 15 15 Si 1.86796 * 120.00133 * 196.68303 * 13 11 10 16 16 H 1.48503 * 109.47159 * 90.00109 * 15 13 11 17 17 H 1.48506 * 109.47040 * 210.00058 * 15 13 11 18 18 H 1.48501 * 109.47360 * 330.00140 * 15 13 11 19 19 C 1.40936 * 119.77850 * 0.47676 * 10 9 8 20 20 C 1.36431 * 120.22396 * 359.77385 * 19 10 9 21 21 C 1.39118 * 120.45477 * 359.97438 * 20 19 10 22 22 O 1.35592 * 119.89265 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00302 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47355 * 60.00909 * 1 2 3 25 25 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47438 * 299.99823 * 1 2 3 27 27 H 1.08994 * 109.47488 * 239.99624 * 2 1 3 28 28 H 1.08999 * 109.46919 * 119.99300 * 2 1 3 29 29 H 1.08003 * 125.70132 * 180.02562 * 5 4 3 30 30 H 1.07999 * 126.07775 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.22271 * 359.97438 * 9 8 7 32 32 H 0.96998 * 119.99602 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.88915 * 179.75525 * 19 10 9 34 34 H 1.07997 * 119.77581 * 179.97438 * 20 19 10 35 35 H 1.08995 * 109.47609 * 179.97438 * 23 22 21 36 36 H 1.09001 * 109.46867 * 300.00497 * 23 22 21 37 37 H 1.09006 * 109.47161 * 59.99507 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2144 2.1881 -1.1281 5 6 2.6583 3.3543 -0.7330 6 6 2.7636 3.3424 0.6579 7 6 2.3636 2.1118 1.0977 8 6 2.3090 1.6590 2.5047 9 6 2.8731 0.4441 2.8675 10 6 2.8187 0.0274 4.2089 11 6 3.3934 -1.2046 4.5920 12 1 3.0245 -1.7247 5.4638 13 6 4.4399 -1.7512 3.8425 14 7 5.1042 -1.0000 3.0012 15 14 4.8898 -3.5532 4.0421 16 1 4.1057 -4.3687 3.0801 17 1 6.3399 -3.7336 3.7773 18 1 4.5816 -3.9899 5.4276 19 6 2.1842 0.8406 5.1693 20 6 1.6280 2.0310 4.8018 21 6 1.6810 2.4551 3.4779 22 8 1.1240 3.6400 3.1251 23 6 0.5004 4.3984 4.1632 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.9016 4.1870 -1.3764 30 1 3.1015 4.1602 1.2771 31 1 3.3536 -0.1755 2.1248 32 1 5.8298 -1.3792 2.4811 33 1 2.1378 0.5203 6.1997 34 1 1.1432 2.6482 5.5436 35 1 0.0970 5.3214 3.7468 36 1 -0.3075 3.8147 4.6044 37 1 1.2366 4.6378 4.9307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240699955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = 37.722757 kcal Electronic energy + Delta-G solvation = -20939.540254 eV Core-core repulsion = 17875.899313 eV Total energy + Delta-G solvation = -3063.640941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98619 -40.32104 -38.11975 -35.37361 -35.19913 -33.13624 -31.00556 -30.27367 -29.53990 -28.30794 -26.45514 -24.85398 -23.37971 -22.68141 -21.61435 -20.74078 -19.02257 -18.52824 -17.68494 -16.93916 -16.52232 -16.28951 -15.92897 -15.72933 -15.28928 -14.89486 -14.81549 -14.33082 -14.11350 -13.83179 -13.74739 -13.35830 -13.24759 -12.95767 -12.85908 -12.77405 -12.46109 -12.33736 -12.17119 -11.74833 -11.66135 -11.60695 -11.25612 -10.92881 -10.36453 -9.63167 -9.18262 -8.82388 -8.57955 -6.24543 0.44387 0.96850 1.23273 1.40240 1.49688 1.52339 1.70804 2.06038 2.22051 2.70560 2.80361 3.63216 3.66118 3.79111 4.08700 4.18650 4.25671 4.35000 4.43641 4.52089 4.60625 4.64894 4.74442 4.79890 4.83121 4.97941 5.02168 5.10176 5.12871 5.21843 5.28983 5.49098 5.55145 5.79352 5.88503 6.00488 6.16824 6.19191 6.53795 6.78303 6.86578 6.94053 7.04635 8.36209 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.007539 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.029606 B = 3712.892816 C = 4791.864293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 N -0.374 5.374 4 N -0.329 5.329 5 C 0.046 3.954 6 C -0.271 4.271 7 C 0.144 3.856 8 C -0.067 4.067 9 C -0.126 4.126 10 C 0.054 3.946 11 C -0.493 4.493 12 H 0.079 0.921 13 C 0.036 3.964 14 N -0.833 5.833 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.186 4.186 20 C -0.169 4.169 21 C 0.033 3.967 22 O -0.333 6.333 23 C 0.025 3.975 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.217 0.783 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.285 0.715 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 3.885 -1.921 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 N -0.158 5.158 4 N -0.150 5.150 5 C -0.139 4.139 6 C -0.300 4.300 7 C 0.017 3.983 8 C -0.069 4.069 9 C -0.147 4.147 10 C 0.052 3.948 11 C -0.523 4.523 12 H 0.097 0.903 13 C -0.178 4.178 14 N -0.460 5.460 15 Si 0.797 3.203 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.205 4.205 20 C -0.187 4.187 21 C -0.012 4.012 22 O -0.248 6.248 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.233 0.767 30 H 0.163 0.837 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.325 3.116 -3.298 7.784 hybrid contribution 0.738 -0.212 1.192 1.417 sum -5.588 2.903 -2.106 6.640 Atomic orbital electron populations 1.22031 0.92954 1.04058 1.01906 1.21880 0.96515 0.77616 1.04317 1.49114 1.51267 1.12342 1.03049 1.77085 1.24874 1.04266 1.08813 1.24153 0.98599 0.96319 0.94801 1.21466 1.15235 0.97914 0.95397 1.19819 0.98228 0.92453 0.87815 1.17398 1.04878 0.96267 0.88376 1.21158 1.01937 0.94876 0.96694 1.17809 0.92209 0.93597 0.91164 1.19665 1.15830 1.04870 1.11972 0.90283 1.26643 0.94452 1.03505 0.93151 1.69904 1.16846 1.38143 1.21133 0.85292 0.77815 0.77159 0.80052 1.18654 1.19922 1.18060 1.20937 1.05739 0.95374 0.98486 1.20677 1.05111 0.98691 0.94245 1.18596 1.02089 0.87946 0.92607 1.85917 1.71152 1.30147 1.37547 1.23121 0.96840 0.95691 0.91281 0.91813 0.88149 0.93834 0.88149 0.89748 0.76695 0.83693 0.87015 0.90498 0.87066 0.84639 0.86798 0.92908 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.24 71.98 0.74 -3.80 16 2 C 0.12 4.19 7.02 86.38 0.61 4.79 16 3 N -0.37 -15.37 3.65 -335.59 -1.23 -16.60 16 4 N -0.33 -12.79 12.56 -57.24 -0.72 -13.51 16 5 C 0.05 1.58 11.99 85.14 1.02 2.60 16 6 C -0.27 -10.79 9.98 22.21 0.22 -10.57 16 7 C 0.14 6.36 6.16 40.65 0.25 6.61 16 8 C -0.07 -3.15 5.57 -20.03 -0.11 -3.26 16 9 C -0.13 -6.43 7.03 22.97 0.16 -6.27 16 10 C 0.05 2.79 5.56 -21.31 -0.12 2.67 16 11 C -0.49 -25.35 9.04 23.40 0.21 -25.14 16 12 H 0.08 3.89 7.90 -2.91 -0.02 3.87 16 13 C 0.04 1.77 5.15 85.22 0.44 2.21 16 14 N -0.83 -43.17 10.96 21.81 0.24 -42.93 16 15 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 19 C -0.19 -8.50 9.72 22.51 0.22 -8.29 16 20 C -0.17 -6.95 8.95 22.06 0.20 -6.75 16 21 C 0.03 1.45 6.70 23.04 0.15 1.60 16 22 O -0.33 -12.71 9.33 -89.02 -0.83 -13.54 16 23 C 0.03 0.68 9.80 113.37 1.11 1.79 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.08 3.34 5.47 -2.39 -0.01 3.33 16 29 H 0.22 5.30 8.06 -2.91 -0.02 5.28 16 30 H 0.15 5.47 8.06 -2.91 -0.02 5.45 16 31 H 0.11 6.01 5.18 -2.91 -0.02 5.99 16 32 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 33 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 34 H 0.14 4.55 6.25 -2.91 -0.02 4.53 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 1.31 7.65 -2.39 -0.02 1.29 16 37 H 0.05 1.34 7.65 -2.38 -0.02 1.32 16 Total: -1.00 -62.34 313.60 5.67 -56.67 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 1.08 Total: 32.34 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 5.10 Total: -41.80 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.71 Total: -73.04 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.83 Total: -13.54 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -62.34 5.67 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240699955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.397 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds