Wall clock time and date at job start Mon Mar 30 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47097 * 2 1 4 4 N 1.40040 * 126.12878 * 274.27731 * 3 2 1 5 5 C 1.30950 * 108.79928 * 180.02562 * 4 3 2 6 6 C 1.39324 * 108.74299 * 359.76197 * 5 4 3 7 7 C 1.36550 * 126.13055 * 94.30770 * 3 2 1 8 8 C 1.47443 * 126.47296 * 359.95560 * 7 3 2 9 9 C 1.40314 * 119.85715 * 336.76102 * 8 7 3 10 10 C 1.36007 * 120.36538 * 179.97438 * 9 8 7 11 11 C 1.40975 * 120.08110 * 0.02562 * 10 9 8 12 12 C 1.40749 * 120.13603 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99041 * 150.23014 * 12 11 10 14 14 C 1.39965 * 120.00290 * 330.23302 * 12 11 10 15 15 N 1.30856 * 120.00261 * 162.10453 * 14 12 11 16 16 Si 1.86798 * 120.00240 * 342.10563 * 14 12 11 17 17 H 1.48502 * 109.47181 * 95.19352 * 16 14 12 18 18 H 1.48501 * 109.47522 * 215.19439 * 16 14 12 19 19 H 1.48504 * 109.46884 * 335.19210 * 16 14 12 20 20 C 1.41552 * 119.72085 * 359.97438 * 11 10 9 21 21 O 1.35688 * 120.17590 * 179.97438 * 20 11 10 22 22 C 1.42903 * 116.99643 * 179.97438 * 21 20 11 23 23 C 1.37835 * 119.63852 * 0.26744 * 20 11 10 24 24 H 1.08997 * 109.47331 * 301.91487 * 1 2 3 25 25 H 1.09001 * 109.46620 * 61.90812 * 1 2 3 26 26 H 1.08998 * 109.46852 * 181.90756 * 1 2 3 27 27 H 1.09000 * 109.47209 * 239.99515 * 2 1 3 28 28 H 1.09007 * 109.47114 * 119.99736 * 2 1 3 29 29 H 1.08003 * 125.62937 * 180.02562 * 5 4 3 30 30 H 1.08004 * 126.17375 * 180.26552 * 6 5 4 31 31 H 1.07994 * 119.81490 * 359.95323 * 9 8 7 32 32 H 1.08003 * 119.96307 * 180.02562 * 10 9 8 33 33 H 0.96995 * 120.00423 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47106 * 59.99804 * 22 21 20 35 35 H 1.09008 * 109.47003 * 299.99798 * 22 21 20 36 36 H 1.09004 * 109.47365 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.04144 * 179.70304 * 23 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2140 2.1878 -1.1279 5 6 2.6586 3.3565 -0.7390 6 6 2.7632 3.3559 0.6503 7 6 2.3648 2.1127 1.0998 8 6 2.3166 1.6621 2.5028 9 6 1.4627 0.6111 2.8701 10 6 1.4104 0.1869 4.1613 11 6 2.2158 0.8029 5.1406 12 6 2.1630 0.3645 6.4770 13 1 3.0359 0.4481 7.1075 14 6 0.9795 -0.1799 6.9888 15 7 1.0087 -0.8974 8.0827 16 14 -0.6419 0.1179 6.1103 17 1 -0.9312 -1.0231 5.2049 18 1 -1.7315 0.2440 7.1113 19 1 -0.5521 1.3696 5.3162 20 6 3.0786 1.8635 4.7740 21 8 3.8575 2.4634 5.7092 22 6 4.7031 3.5262 5.2645 23 6 3.1187 2.2876 3.4631 24 1 -0.3634 0.5433 0.8723 25 1 -0.3632 0.4839 -0.9066 26 1 -0.3633 -1.0271 0.0342 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.9000 4.1855 -1.3878 30 1 3.0977 4.1788 1.2647 31 1 0.8433 0.1366 2.1234 32 1 0.7510 -0.6230 4.4367 33 1 0.1885 -1.2743 8.4375 34 1 4.0926 4.3218 4.8375 35 1 5.3914 3.1502 4.5074 36 1 5.2707 3.9167 6.1092 37 1 3.7710 3.0993 3.1772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240700019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:52 Heat of formation + Delta-G solvation = 40.197126 kcal Electronic energy + Delta-G solvation = -20684.332308 eV Core-core repulsion = 17620.798663 eV Total energy + Delta-G solvation = -3063.533644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93387 -40.50495 -38.08198 -35.86637 -35.32763 -33.25547 -30.92265 -30.60036 -30.00982 -28.15476 -26.72561 -24.70890 -23.53225 -22.74822 -21.44589 -20.83713 -19.48561 -18.76422 -17.37395 -17.12592 -16.64104 -16.33783 -16.05129 -15.88760 -15.44415 -15.21542 -14.79725 -14.70686 -14.29152 -13.97925 -13.67633 -13.49647 -13.36560 -12.96304 -12.87754 -12.77955 -12.47318 -12.27410 -12.17160 -11.83047 -11.74411 -11.57163 -11.40768 -11.10152 -10.39701 -9.69747 -9.20649 -8.96924 -8.90255 -6.40293 0.13350 0.82529 1.17480 1.28905 1.44201 1.49532 1.65860 2.01232 2.10119 2.61210 2.79647 3.39896 3.65506 3.79529 4.07035 4.11042 4.18574 4.28481 4.34007 4.42449 4.49799 4.51342 4.69249 4.72871 4.76628 4.84145 4.89887 4.91796 5.07569 5.15341 5.18561 5.22552 5.51228 5.64185 5.85612 5.89064 6.06970 6.17767 6.24824 6.39407 6.68796 6.88510 7.02713 8.10555 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.006899 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.430658 B = 4057.815565 C = 5300.465404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.378 5.378 4 N -0.337 5.337 5 C 0.049 3.951 6 C -0.298 4.298 7 C 0.150 3.850 8 C -0.145 4.145 9 C -0.093 4.093 10 C -0.230 4.230 11 C 0.064 3.936 12 C -0.448 4.448 13 H 0.059 0.941 14 C 0.048 3.952 15 N -0.834 5.834 16 Si 0.961 3.039 17 H -0.247 1.247 18 H -0.276 1.276 19 H -0.255 1.255 20 C 0.018 3.982 21 O -0.337 6.337 22 C 0.022 3.978 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.212 0.788 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.298 0.702 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 4.574 -11.956 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 N -0.161 5.161 4 N -0.158 5.158 5 C -0.135 4.135 6 C -0.327 4.327 7 C 0.024 3.976 8 C -0.148 4.148 9 C -0.112 4.112 10 C -0.249 4.249 11 C 0.061 3.939 12 C -0.477 4.477 13 H 0.077 0.923 14 C -0.168 4.168 15 N -0.459 5.459 16 Si 0.784 3.216 17 H -0.172 1.172 18 H -0.202 1.202 19 H -0.179 1.179 20 C -0.027 4.027 21 O -0.252 6.252 22 C -0.072 4.072 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.662 3.511 -12.553 13.052 hybrid contribution -0.069 0.554 0.928 1.083 sum -0.731 4.065 -11.625 12.337 Atomic orbital electron populations 1.22237 0.93489 1.04494 1.02353 1.22047 0.96079 0.77542 1.05085 1.49150 1.51610 1.12356 1.02998 1.77123 1.25346 1.04578 1.08788 1.24083 0.98154 0.96117 0.95140 1.21825 1.17494 0.97898 0.95444 1.20137 0.97769 0.92285 0.87451 1.17350 1.05473 1.02899 0.89115 1.21020 0.98075 0.96040 0.96020 1.20520 1.06930 1.04356 0.93091 1.17467 0.92391 0.90142 0.93904 1.19293 0.98902 1.33112 0.96349 0.92275 1.26890 1.04172 0.90610 0.95153 1.69711 1.32597 1.23135 1.20443 0.85544 0.76200 0.81419 0.78434 1.17221 1.20244 1.17878 1.19066 0.98955 0.96379 0.88256 1.85995 1.54044 1.49462 1.35677 1.23172 0.93290 0.88501 1.02279 1.20866 1.01646 1.01785 0.90844 0.93054 0.91827 0.87819 0.87707 0.88362 0.77127 0.82779 0.84761 0.87059 0.89149 0.92346 0.92650 0.87077 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.52 71.98 0.69 -3.14 16 2 C 0.11 2.96 6.29 86.38 0.54 3.50 16 3 N -0.38 -12.31 3.66 -334.71 -1.23 -13.53 16 4 N -0.34 -10.80 12.54 -57.32 -0.72 -11.52 16 5 C 0.05 1.36 11.97 85.09 1.02 2.37 16 6 C -0.30 -9.23 10.25 22.49 0.23 -9.00 16 7 C 0.15 5.30 6.74 40.80 0.28 5.58 16 8 C -0.15 -5.67 5.83 -19.95 -0.12 -5.79 16 9 C -0.09 -3.67 8.36 22.26 0.19 -3.49 16 10 C -0.23 -10.33 7.07 22.42 0.16 -10.17 16 11 C 0.06 3.23 5.12 -21.18 -0.11 3.12 16 12 C -0.45 -24.72 9.17 23.30 0.21 -24.51 16 13 H 0.06 3.60 7.88 -2.91 -0.02 3.58 16 14 C 0.05 2.50 5.40 85.26 0.46 2.96 16 15 N -0.83 -44.10 13.93 21.83 0.30 -43.80 16 16 Si 0.96 40.82 24.49 68.60 1.68 42.50 16 17 H -0.25 -9.58 6.70 99.48 0.67 -8.91 16 18 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 19 H -0.25 -11.25 6.85 99.48 0.68 -10.57 16 20 C 0.02 0.84 6.71 22.99 0.15 0.99 16 21 O -0.34 -14.77 9.83 -90.06 -0.89 -15.66 16 22 C 0.02 0.67 9.81 113.37 1.11 1.78 16 23 C -0.13 -5.21 8.54 22.57 0.19 -5.02 16 24 H 0.05 1.35 6.76 -2.39 -0.02 1.33 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.10 2.65 5.88 -2.38 -0.01 2.63 16 29 H 0.21 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.15 4.18 7.78 -2.91 -0.02 4.16 16 31 H 0.13 4.50 3.32 -2.91 -0.01 4.49 16 32 H 0.11 4.88 4.66 -2.91 -0.01 4.86 16 33 H 0.30 14.01 8.30 -92.71 -0.77 13.24 16 34 H 0.06 1.56 7.65 -2.39 -0.02 1.54 16 35 H 0.05 1.50 7.68 -2.38 -0.02 1.48 16 36 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.14 4.56 5.72 -2.91 -0.02 4.55 16 Total: -1.00 -63.80 302.18 5.19 -58.61 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.03 Total: 24.19 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 5.01 Total: -40.80 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -1.64 Total: -68.85 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.89 Total: -15.66 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.68 Total: 42.50 kcal Total: -63.80 5.19 -58.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240700019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.809 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds