Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47480 * 2 1 4 4 N 1.40040 * 126.13937 * 274.88248 * 3 2 1 5 5 C 1.30963 * 108.82867 * 180.02562 * 4 3 2 6 6 C 1.39274 * 108.77459 * 359.73422 * 5 4 3 7 7 C 1.36622 * 126.13071 * 94.89956 * 3 2 1 8 8 C 1.47198 * 126.49113 * 359.97438 * 7 3 2 9 9 C 1.39587 * 120.53085 * 49.48654 * 8 7 3 10 10 C 1.37679 * 120.10986 * 179.97438 * 9 8 7 11 11 C 1.39406 * 121.24542 * 359.97438 * 10 9 8 12 12 O 1.35860 * 119.45808 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99898 * 359.97438 * 12 11 10 14 14 C 1.37773 * 121.08142 * 0.02562 * 11 10 9 15 15 C 1.40772 * 119.80030 * 359.97438 * 14 11 10 16 16 C 1.40749 * 120.58807 * 179.72401 * 15 14 11 17 17 H 1.07997 * 120.00185 * 210.98146 * 16 15 14 18 18 C 1.40024 * 119.99718 * 30.98569 * 16 15 14 19 19 N 1.30802 * 120.00302 * 12.09250 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 192.08936 * 18 16 15 21 21 H 1.48509 * 109.46916 * 60.00282 * 20 18 16 22 22 H 1.48505 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47394 * 300.00085 * 20 18 16 24 24 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47384 * 300.00032 * 1 2 3 26 26 H 1.09000 * 109.46906 * 60.00085 * 1 2 3 27 27 H 1.09001 * 109.47095 * 240.00306 * 2 1 3 28 28 H 1.09002 * 109.47159 * 120.00378 * 2 1 3 29 29 H 1.08006 * 125.61215 * 180.02562 * 5 4 3 30 30 H 1.07996 * 126.18242 * 180.27080 * 6 5 4 31 31 H 1.08006 * 119.94301 * 359.96107 * 9 8 7 32 32 H 1.08001 * 119.37830 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.47047 * 180.02562 * 13 12 11 34 34 H 1.08995 * 109.47618 * 300.00281 * 13 12 11 35 35 H 1.09002 * 109.46812 * 60.00452 * 13 12 11 36 36 H 1.07999 * 120.09518 * 180.02562 * 14 11 10 37 37 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2030 2.1919 -1.1268 5 6 2.6516 3.3594 -0.7386 6 6 2.7698 3.3554 0.6491 7 6 2.3758 2.1092 1.0994 8 6 2.3419 1.6549 2.4991 9 6 2.9166 0.4360 2.8632 10 6 2.8803 0.0198 4.1750 11 6 2.2763 0.7955 5.1634 12 8 2.2618 0.3498 6.4467 13 6 2.8803 -0.9129 6.7020 14 6 1.6938 2.0066 4.8600 15 6 1.7052 2.4755 3.5328 16 6 1.1100 3.7077 3.2033 17 1 0.6716 3.8517 2.2269 18 6 1.0864 4.7468 4.1416 19 7 1.8137 4.6658 5.2258 20 14 0.0162 6.2489 3.8450 21 1 -1.4047 5.8307 3.7369 22 1 0.1679 7.1964 4.9784 23 1 0.4339 6.9133 2.5844 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.8864 4.1904 -1.3874 30 1 3.1103 4.1765 1.2624 31 1 3.3903 -0.1816 2.1144 32 1 3.3283 -0.9256 4.4435 33 1 2.7982 -1.1498 7.7627 34 1 2.3820 -1.6864 6.1177 35 1 3.9322 -0.8657 6.4202 36 1 1.2306 2.5948 5.6384 37 1 1.7976 5.3858 5.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240706110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = 49.458986 kcal Electronic energy + Delta-G solvation = -20772.542168 eV Core-core repulsion = 17709.410148 eV Total energy + Delta-G solvation = -3063.132020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12220 -38.70480 -36.19461 -34.02227 -33.50829 -30.63072 -29.88787 -28.74792 -27.84733 -26.21182 -25.28694 -23.37612 -21.41246 -21.09219 -19.87912 -18.82721 -17.80275 -16.25795 -16.18489 -15.27100 -14.91238 -14.82389 -14.56209 -14.11630 -13.76393 -13.33780 -12.98347 -12.83354 -12.48152 -12.41547 -11.88762 -11.86796 -11.70193 -11.40233 -11.25827 -11.16969 -11.02394 -10.85360 -10.65004 -10.25743 -9.92677 -9.86509 -9.59103 -9.31221 -8.50177 -7.69704 -7.58522 -6.99887 -6.69731 -4.54865 2.25127 2.69899 2.96492 3.02210 3.05780 3.14051 3.32434 3.79458 3.84644 4.22092 4.49672 5.05000 5.37589 5.42153 5.52176 5.57911 5.64513 5.66544 5.71411 5.84432 5.91251 5.97670 6.07156 6.23742 6.40599 6.49808 6.61101 6.70660 6.85444 7.00851 7.13758 7.29923 7.50858 7.54545 7.56841 7.76397 7.85549 7.99971 8.26233 8.55839 8.60634 8.67089 8.76601 10.02312 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.009626 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.217376 B = 2908.127641 C = 4855.566101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.380 5.380 4 N -0.331 5.331 5 C 0.036 3.964 6 C -0.269 4.269 7 C 0.192 3.808 8 C -0.202 4.202 9 C -0.036 4.036 10 C -0.322 4.322 11 C 0.145 3.855 12 O -0.329 6.329 13 C 0.036 3.964 14 C -0.196 4.196 15 C 0.171 3.829 16 C -0.432 4.432 17 H 0.087 0.913 18 C 0.075 3.925 19 N -0.777 5.777 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.127 0.873 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -5.356 -2.180 5.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.164 5.164 4 N -0.153 5.153 5 C -0.147 4.147 6 C -0.297 4.297 7 C 0.067 3.933 8 C -0.205 4.205 9 C -0.055 4.055 10 C -0.342 4.342 11 C 0.101 3.899 12 O -0.243 6.243 13 C -0.060 4.060 14 C -0.216 4.216 15 C 0.166 3.834 16 C -0.460 4.460 17 H 0.105 0.895 18 C -0.145 4.145 19 N -0.400 5.400 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.185 1.185 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.674 -5.966 -2.840 6.642 hybrid contribution 0.076 0.947 0.557 1.102 sum -0.598 -5.019 -2.283 5.546 Atomic orbital electron populations 1.22126 0.94943 1.02122 1.03219 1.21526 0.95066 0.79082 1.03333 1.49043 1.51772 1.11525 1.04018 1.77051 1.25701 1.03764 1.08833 1.23456 1.00091 0.95666 0.95517 1.21651 1.15742 0.98658 0.93669 1.19927 0.95093 0.91005 0.87322 1.18849 1.13306 0.99439 0.88948 1.20278 0.96623 0.94035 0.94547 1.20186 1.17310 1.02857 0.93863 1.18953 0.95799 0.93799 0.81380 1.86019 1.75317 1.36068 1.26902 1.22777 0.97181 0.85092 1.00925 1.20434 1.09003 0.94312 0.97845 1.18151 0.86056 0.90486 0.88674 1.19515 1.30699 0.95608 1.00186 0.89476 1.26001 0.94099 1.00551 0.93869 1.69793 1.29557 1.32674 1.08005 0.86289 0.81019 0.79981 0.79194 1.18681 1.20161 1.18512 0.91389 0.91515 0.92203 0.90199 0.88860 0.81348 0.83806 0.89107 0.88470 0.89842 0.93649 0.93550 0.85550 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.13 2.13 7.03 -4.04 -0.03 2.10 16 3 N -0.38 -7.62 3.66 -57.17 -0.21 -7.83 16 4 N -0.33 -6.72 12.54 30.52 0.38 -6.33 16 5 C 0.04 0.69 11.97 -17.54 -0.21 0.48 16 6 C -0.27 -5.77 9.39 -39.20 -0.37 -6.14 16 7 C 0.19 4.26 5.94 -82.09 -0.49 3.77 16 8 C -0.20 -4.69 5.76 -102.41 -0.59 -5.28 16 9 C -0.04 -0.76 8.41 -39.28 -0.33 -1.09 16 10 C -0.32 -6.82 8.98 -39.35 -0.35 -7.18 16 11 C 0.15 3.35 6.66 -39.32 -0.26 3.09 16 12 O -0.33 -6.92 10.47 -19.30 -0.20 -7.12 16 13 C 0.04 0.55 9.79 101.05 0.99 1.54 16 14 C -0.20 -4.95 8.57 -38.79 -0.33 -5.28 16 15 C 0.17 4.31 5.67 -104.65 -0.59 3.71 16 16 C -0.43 -10.78 7.73 -37.96 -0.29 -11.07 16 17 H 0.09 2.18 7.05 -52.49 -0.37 1.81 16 18 C 0.08 1.79 5.22 -17.32 -0.09 1.70 16 19 N -0.78 -19.12 11.08 55.55 0.62 -18.51 16 20 Si 0.91 18.04 29.58 -169.99 -5.03 13.02 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.48 5.53 -51.93 -0.29 1.19 16 29 H 0.17 2.58 8.06 -52.48 -0.42 2.16 16 30 H 0.14 3.14 7.95 -52.49 -0.42 2.72 16 31 H 0.09 1.73 7.10 -52.48 -0.37 1.35 16 32 H 0.10 1.79 6.17 -52.49 -0.32 1.47 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 35 H 0.05 0.68 7.62 -51.93 -0.40 0.28 16 36 H 0.13 3.35 6.46 -52.49 -0.34 3.01 16 37 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -28.17 312.57 -6.87 -35.04 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.57 Total: 8.76 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -2.57 Total: -21.73 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.79 Total: -32.67 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.20 Total: -7.12 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.17 -6.87 -35.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240706110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.496 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds